Atomistry » Fluorine » PDB 5sb0-5sjo » 5seu
Atomistry »
  Fluorine »
    PDB 5sb0-5sjo »
      5seu »

Fluorine in PDB 5seu: Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine

Enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine

All present enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine, PDB code: 5seu was solved by C.Joseph, C.Lerner, J.Benz, D.Schlatter, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.49 / 2.09
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 135.19, 135.19, 235.047, 90, 90, 120
R / Rfree (%) 18.3 / 23.8

Other elements in 5seu:

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Zinc (Zn) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine (pdb code 5seu). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine, PDB code: 5seu:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 1 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:48.6
occ:0.50
 F06 A:IHL803 0.0 48.6 0.5
F08 A:IHL803 0.4 48.2 0.5
C05 A:IHL803 1.3 46.2 0.5
C05 A:IHL803 1.6 48.4 0.5
F07 A:IHL803 2.2 49.0 0.5
F08 A:IHL803 2.2 53.6 0.5
F06 A:IHL803 2.2 50.9 0.5
C01 A:IHL803 2.2 41.7 0.5
C01 A:IHL803 2.5 40.2 0.5
F07 A:IHL803 2.5 49.7 0.5
O A:LEU675 3.0 33.1 1.0
C02 A:IHL803 3.0 38.6 0.5
CA A:LEU675 3.0 36.3 1.0
C02 A:IHL803 3.1 40.9 0.5
C04 A:IHL803 3.2 36.1 0.5
CD2 A:LEU675 3.3 45.2 1.0
CB A:LEU675 3.4 39.9 1.0
C A:LEU675 3.4 34.4 1.0
C04 A:IHL803 3.5 39.9 0.5
CG1 A:VAL678 3.6 36.9 1.0
O A:HOH942 3.8 33.1 1.0
CG A:LEU675 3.9 40.1 1.0
CE2 A:PHE729 4.0 35.3 1.0
CZ A:PHE729 4.1 36.4 1.0
O A:ASP674 4.3 34.2 1.0
C03 A:IHL803 4.3 41.4 0.5
N A:LEU675 4.4 38.1 1.0
C03 A:IHL803 4.4 41.8 0.5
N09 A:IHL803 4.5 38.0 0.5
N A:VAL678 4.5 34.9 1.0
CB A:SER677 4.5 39.8 1.0
N A:CYS676 4.6 31.4 1.0
O A:HOH937 4.6 39.3 1.0
N A:SER677 4.6 29.7 1.0
CD1 A:LEU675 4.6 43.9 1.0
CG2 A:VAL678 4.7 36.6 1.0
CB A:VAL678 4.7 38.1 1.0
N09 A:IHL803 4.8 39.3 0.5
C A:ASP674 4.8 36.7 1.0
OH A:TYR524 4.9 39.6 1.0
C10 A:IHL803 4.9 40.9 0.5
OG A:SER677 4.9 53.2 1.0
CA A:SER677 5.0 35.3 1.0

Fluorine binding site 2 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 2 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:50.9
occ:0.50
 F06 A:IHL803 0.0 50.9 0.5
F08 A:IHL803 1.0 53.6 0.5
C05 A:IHL803 1.0 46.2 0.5
C05 A:IHL803 1.3 48.4 0.5
F07 A:IHL803 1.4 49.0 0.5
C01 A:IHL803 2.1 41.7 0.5
C01 A:IHL803 2.2 40.2 0.5
F08 A:IHL803 2.2 48.2 0.5
F06 A:IHL803 2.2 48.6 0.5
F07 A:IHL803 2.2 49.7 0.5
C02 A:IHL803 2.6 40.9 0.5
OH A:TYR524 3.0 39.6 1.0
C04 A:IHL803 3.0 36.1 0.5
O A:HOH942 3.1 33.1 1.0
C02 A:IHL803 3.2 38.6 0.5
O A:HOH937 3.2 39.3 1.0
C04 A:IHL803 3.4 39.9 0.5
CZ A:TYR524 3.8 38.6 1.0
CD1 A:ILE692 3.9 44.3 1.0
O A:ASP674 3.9 34.2 1.0
C03 A:IHL803 4.0 41.8 0.5
CB A:SER677 4.1 39.8 1.0
CA A:LEU675 4.2 36.3 1.0
N09 A:IHL803 4.3 38.0 0.5
CD2 A:LEU675 4.3 45.2 1.0
CE2 A:TYR524 4.4 33.4 1.0
C03 A:IHL803 4.5 41.4 0.5
O A:LEU675 4.5 33.1 1.0
CE1 A:TYR524 4.5 36.2 1.0
C A:LEU675 4.6 34.4 1.0
OG A:SER677 4.6 53.2 1.0
N09 A:IHL803 4.6 39.3 0.5
CG1 A:ILE692 4.8 40.1 1.0
C10 A:IHL803 4.8 40.5 0.5
C A:ASP674 4.9 36.7 1.0
C10 A:IHL803 4.9 40.9 0.5
N A:SER677 5.0 29.7 1.0

Fluorine binding site 3 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 3 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:49.0
occ:0.50
 F07 A:IHL803 0.0 49.0 0.5
C05 A:IHL803 1.3 46.2 0.5
F06 A:IHL803 1.4 50.9 0.5
C02 A:IHL803 1.7 40.9 0.5
C05 A:IHL803 1.9 48.4 0.5
C01 A:IHL803 2.0 40.2 0.5
F06 A:IHL803 2.2 48.6 0.5
C01 A:IHL803 2.3 41.7 0.5
F08 A:IHL803 2.3 53.6 0.5
F08 A:IHL803 2.3 48.2 0.5
C04 A:IHL803 2.5 36.1 0.5
O A:HOH937 2.9 39.3 1.0
C03 A:IHL803 3.1 41.8 0.5
F07 A:IHL803 3.2 49.7 0.5
CD2 A:LEU675 3.2 45.2 1.0
C04 A:IHL803 3.5 39.9 0.5
C02 A:IHL803 3.6 38.6 0.5
OH A:TYR524 3.8 39.6 1.0
O A:ASP674 3.9 34.2 1.0
N09 A:IHL803 3.9 38.0 0.5
CA A:LEU675 4.0 36.3 1.0
O A:HOH942 4.0 33.1 1.0
C10 A:IHL803 4.2 40.5 0.5
N09 A:IHL803 4.4 39.3 0.5
CG A:LEU675 4.5 40.1 1.0
CZ A:PHE729 4.5 36.4 1.0
CB A:LEU675 4.5 39.9 1.0
CZ A:TYR524 4.6 38.6 1.0
C A:ASP674 4.7 36.7 1.0
C03 A:IHL803 4.7 41.4 0.5
C A:LEU675 4.8 34.4 1.0
O A:LEU675 4.8 33.1 1.0
N A:LEU675 4.8 38.1 1.0
CD1 A:ILE692 4.8 44.3 1.0
C10 A:IHL803 4.9 40.9 0.5
CE2 A:PHE729 4.9 35.3 1.0
N13 A:IHL803 4.9 38.0 0.5
CE2 A:TYR524 4.9 33.4 1.0

Fluorine binding site 4 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 4 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:49.7
occ:0.50
 F07 A:IHL803 0.0 49.7 0.5
C05 A:IHL803 1.4 48.4 0.5
C02 A:IHL803 1.5 38.6 0.5
F08 A:IHL803 1.6 53.6 0.5
C01 A:IHL803 1.8 41.7 0.5
C05 A:IHL803 1.9 46.2 0.5
F08 A:IHL803 2.2 48.2 0.5
F06 A:IHL803 2.2 50.9 0.5
C01 A:IHL803 2.3 40.2 0.5
F06 A:IHL803 2.5 48.6 0.5
C04 A:IHL803 2.7 39.9 0.5
C03 A:IHL803 2.9 41.4 0.5
OG A:SER677 3.0 53.2 1.0
CD1 A:ILE692 3.1 44.3 1.0
F07 A:IHL803 3.2 49.0 0.5
CB A:SER677 3.2 39.8 1.0
C04 A:IHL803 3.2 36.1 0.5
C02 A:IHL803 3.7 40.9 0.5
CG1 A:VAL678 3.7 36.9 1.0
O A:HOH912 3.7 37.3 1.0
C10 A:IHL803 4.0 40.9 0.5
N09 A:IHL803 4.1 38.0 0.5
O A:HOH942 4.1 33.1 1.0
N09 A:IHL803 4.1 39.3 0.5
CA A:SER677 4.2 35.3 1.0
N A:VAL678 4.3 34.9 1.0
O A:LEU675 4.4 33.1 1.0
C A:SER677 4.4 36.2 1.0
OH A:TYR524 4.5 39.6 1.0
CG1 A:ILE692 4.5 40.1 1.0
N A:SER677 4.6 29.7 1.0
C03 A:IHL803 4.8 41.8 0.5
C10 A:IHL803 5.0 40.5 0.5
O A:HOH910 5.0 37.4 1.0
CB A:VAL678 5.0 38.1 1.0
CZ A:TYR524 5.0 38.6 1.0

Fluorine binding site 5 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 5 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:53.6
occ:0.50
 F08 A:IHL803 0.0 53.6 0.5
F06 A:IHL803 1.0 50.9 0.5
C05 A:IHL803 1.3 48.4 0.5
C05 A:IHL803 1.3 46.2 0.5
F07 A:IHL803 1.6 49.7 0.5
F08 A:IHL803 2.1 48.2 0.5
F06 A:IHL803 2.2 48.6 0.5
F07 A:IHL803 2.3 49.0 0.5
C01 A:IHL803 2.3 41.7 0.5
C01 A:IHL803 2.6 40.2 0.5
O A:HOH942 2.8 33.1 1.0
C02 A:IHL803 2.9 38.6 0.5
OH A:TYR524 3.1 39.6 1.0
CB A:SER677 3.2 39.8 1.0
C02 A:IHL803 3.4 40.9 0.5
C04 A:IHL803 3.5 36.1 0.5
C04 A:IHL803 3.6 39.9 0.5
OG A:SER677 3.7 53.2 1.0
CD1 A:ILE692 3.7 44.3 1.0
CZ A:TYR524 3.9 38.6 1.0
O A:HOH937 3.9 39.3 1.0
O A:LEU675 4.0 33.1 1.0
O A:ASP674 4.2 34.2 1.0
N A:SER677 4.2 29.7 1.0
CA A:SER677 4.2 35.3 1.0
CA A:LEU675 4.2 36.3 1.0
C A:LEU675 4.2 34.4 1.0
C03 A:IHL803 4.3 41.4 0.5
CE1 A:TYR524 4.4 36.2 1.0
CG1 A:VAL678 4.7 36.9 1.0
N09 A:IHL803 4.7 38.0 0.5
N A:VAL678 4.8 34.9 1.0
C03 A:IHL803 4.8 41.8 0.5
CG1 A:ILE692 4.8 40.1 1.0
CE2 A:TYR524 4.8 33.4 1.0
C A:SER677 4.9 36.2 1.0
CD2 A:LEU675 4.9 45.2 1.0
N09 A:IHL803 4.9 39.3 0.5

Fluorine binding site 6 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 6 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:48.2
occ:0.50
 F08 A:IHL803 0.0 48.2 0.5
F06 A:IHL803 0.4 48.6 0.5
C05 A:IHL803 1.3 46.2 0.5
C05 A:IHL803 1.3 48.4 0.5
C01 A:IHL803 2.0 41.7 0.5
F08 A:IHL803 2.1 53.6 0.5
F06 A:IHL803 2.2 50.9 0.5
F07 A:IHL803 2.2 49.7 0.5
F07 A:IHL803 2.3 49.0 0.5
C01 A:IHL803 2.3 40.2 0.5
C02 A:IHL803 2.7 38.6 0.5
O A:LEU675 3.1 33.1 1.0
C04 A:IHL803 3.1 36.1 0.5
C02 A:IHL803 3.1 40.9 0.5
C04 A:IHL803 3.2 39.9 0.5
CG1 A:VAL678 3.4 36.9 1.0
CA A:LEU675 3.4 36.3 1.0
C A:LEU675 3.6 34.4 1.0
CD2 A:LEU675 3.7 45.2 1.0
CB A:LEU675 3.7 39.9 1.0
CE2 A:PHE729 3.9 35.3 1.0
O A:HOH942 4.0 33.1 1.0
C03 A:IHL803 4.0 41.4 0.5
CZ A:PHE729 4.2 36.4 1.0
CG A:LEU675 4.3 40.1 1.0
N09 A:IHL803 4.3 38.0 0.5
N A:VAL678 4.3 34.9 1.0
CB A:SER677 4.4 39.8 1.0
C03 A:IHL803 4.4 41.8 0.5
CB A:VAL678 4.5 38.1 1.0
N09 A:IHL803 4.5 39.3 0.5
CG2 A:VAL678 4.6 36.6 1.0
N A:SER677 4.6 29.7 1.0
C10 A:IHL803 4.6 40.9 0.5
O A:ASP674 4.6 34.2 1.0
OG A:SER677 4.7 53.2 1.0
N A:LEU675 4.7 38.1 1.0
N A:CYS676 4.8 31.4 1.0
O A:HOH937 4.8 39.3 1.0
CA A:SER677 4.9 35.3 1.0
CD1 A:LEU675 4.9 43.9 1.0
C10 A:IHL803 4.9 40.5 0.5
OH A:TYR524 5.0 39.6 1.0
C A:SER677 5.0 36.2 1.0

Fluorine binding site 7 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 7 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:56.3
occ:1.00
 F06 B:IHL803 0.0 56.3 1.0
C05 B:IHL803 1.3 56.5 1.0
C01 B:IHL803 2.1 48.5 1.0
F08 B:IHL803 2.2 56.3 1.0
F07 B:IHL803 2.2 59.6 1.0
C02 B:IHL803 2.4 48.8 1.0
OH B:TYR524 2.8 36.9 1.0
O B:HOH940 3.0 31.5 1.0
C04 B:IHL803 3.4 48.0 1.0
O B:HOH935 3.5 36.8 1.0
CZ B:TYR524 3.6 40.4 1.0
C03 B:IHL803 3.7 51.9 1.0
O B:ASP674 3.9 30.8 1.0
CD2 B:LEU675 4.0 38.0 1.0
CD1 B:ILE692 4.1 45.6 1.0
CA B:LEU675 4.1 29.4 1.0
CE2 B:TYR524 4.2 37.5 1.0
CB B:SER677 4.4 44.3 1.0
N09 B:IHL803 4.5 42.3 1.0
CE1 B:TYR524 4.5 37.3 1.0
C10 B:IHL803 4.6 45.2 1.0
C B:LEU675 4.6 30.8 1.0
O B:LEU675 4.7 34.2 1.0
CG1 B:ILE692 4.8 43.6 1.0
C B:ASP674 4.8 31.6 1.0
CB B:LEU675 4.9 31.3 1.0
OG B:SER677 4.9 57.6 1.0

Fluorine binding site 8 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 8 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:59.6
occ:1.00
 F07 B:IHL803 0.0 59.6 1.0
C05 B:IHL803 1.3 56.5 1.0
F08 B:IHL803 2.2 56.3 1.0
F06 B:IHL803 2.2 56.3 1.0
C01 B:IHL803 2.3 48.5 1.0
C04 B:IHL803 2.8 48.0 1.0
OG B:SER677 3.0 57.6 1.0
CB B:SER677 3.0 44.3 1.0
CD1 B:ILE692 3.3 45.6 1.0
C02 B:IHL803 3.6 48.8 1.0
CG1 B:VAL678 3.8 39.6 1.0
O B:HOH935 4.0 36.8 1.0
OH B:TYR524 4.0 36.9 1.0
CA B:SER677 4.0 41.0 1.0
O B:HOH957 4.2 32.7 1.0
O B:LEU675 4.2 34.2 1.0
N B:VAL678 4.2 38.8 1.0
N09 B:IHL803 4.3 42.3 1.0
C B:SER677 4.3 47.0 1.0
N B:SER677 4.4 37.7 1.0
CG1 B:ILE692 4.5 43.6 1.0
CZ B:TYR524 4.7 40.4 1.0
C B:LEU675 4.7 30.8 1.0
C03 B:IHL803 4.8 51.9 1.0
CA B:LEU675 4.8 29.4 1.0
CE1 B:TYR524 4.9 37.3 1.0
C10 B:IHL803 5.0 45.2 1.0

Fluorine binding site 9 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 9 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:56.3
occ:1.00
 F08 B:IHL803 0.0 56.3 1.0
C05 B:IHL803 1.3 56.5 1.0
F07 B:IHL803 2.2 59.6 1.0
F06 B:IHL803 2.2 56.3 1.0
C01 B:IHL803 2.3 48.5 1.0
C02 B:IHL803 2.9 48.8 1.0
O B:LEU675 3.1 34.2 1.0
CA B:LEU675 3.2 29.4 1.0
C04 B:IHL803 3.3 48.0 1.0
CD2 B:LEU675 3.4 38.0 1.0
CB B:LEU675 3.4 31.3 1.0
C B:LEU675 3.5 30.8 1.0
CG1 B:VAL678 3.6 39.6 1.0
CG B:LEU675 3.9 35.4 1.0
CE2 B:PHE729 4.0 36.0 1.0
O B:HOH935 4.0 36.8 1.0
C03 B:IHL803 4.2 51.9 1.0
CB B:SER677 4.4 44.3 1.0
CZ B:PHE729 4.4 35.6 1.0
O B:ASP674 4.4 30.8 1.0
N B:VAL678 4.5 38.8 1.0
N B:LEU675 4.5 29.3 1.0
N09 B:IHL803 4.5 42.3 1.0
N B:SER677 4.6 37.7 1.0
O B:HOH940 4.7 31.5 1.0
N B:CYS676 4.7 34.7 1.0
OH B:TYR524 4.7 36.9 1.0
CB B:VAL678 4.7 39.2 1.0
CD1 B:LEU675 4.7 37.1 1.0
OG B:SER677 4.7 57.6 1.0
C10 B:IHL803 4.8 45.2 1.0
CG2 B:VAL678 4.8 36.2 1.0
CA B:SER677 4.9 41.0 1.0
C B:ASP674 4.9 31.6 1.0

Fluorine binding site 10 out of 18 in 5seu

Go back to Fluorine Binding Sites List in 5seu
Fluorine binding site 10 out of 18 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-[2- (2-Methyl-5-Pyrrolidin-1-Yl-1,2,4-Triazol-3-Yl)Ethyl]-6- (Trifluoromethyl)-[1,2,4]Triazolo[1,5-A]Pyridine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F803

b:53.1
occ:0.50
 F06 C:IHL803 0.0 53.1 0.5
F08 C:IHL803 0.2 53.4 0.5
C05 C:IHL803 1.3 44.9 0.5
C05 C:IHL803 1.3 46.5 0.5
F07 C:IHL803 2.0 40.0 0.5
F08 C:IHL803 2.1 48.2 0.5
F07 C:IHL803 2.2 46.2 0.5
F06 C:IHL803 2.2 58.5 0.5
C01 C:IHL803 2.3 41.0 0.5
C01 C:IHL803 2.3 45.3 0.5
O C:LEU675 3.1 30.0 1.0
C02 C:IHL803 3.1 45.5 0.5
C02 C:IHL803 3.1 39.9 0.5
C04 C:IHL803 3.2 37.6 0.5
CA C:LEU675 3.2 31.5 1.0
C04 C:IHL803 3.3 42.5 0.5
C C:LEU675 3.5 26.6 1.0
CD2 C:LEU675 3.6 37.8 1.0
CB C:LEU675 3.6 32.7 1.0
CG1 C:VAL678 3.6 40.7 1.0
OG C:SER677 3.6 52.6 1.0
O C:HOH958 3.9 41.5 1.0
CE2 C:PHE729 4.1 40.2 1.0
CG C:LEU675 4.2 38.9 1.0
O C:ASP674 4.4 33.1 1.0
C03 C:IHL803 4.4 39.9 0.5
C03 C:IHL803 4.4 45.2 0.5
CZ C:PHE729 4.4 39.0 1.0
N C:VAL678 4.4 41.3 1.0
N09 C:IHL803 4.5 39.3 0.5
O C:HOH950 4.5 33.2 1.0
N C:LEU675 4.5 32.4 1.0
N09 C:IHL803 4.5 45.4 0.5
N C:SER677 4.6 39.4 1.0
CB C:VAL678 4.7 43.2 1.0
N C:CYS676 4.7 29.5 1.0
CG2 C:VAL678 4.7 42.9 1.0
OH C:TYR524 4.8 37.4 1.0
CB C:SER677 4.8 53.3 1.0
C C:ASP674 4.9 36.4 1.0
C10 C:IHL803 5.0 40.4 0.5
C10 C:IHL803 5.0 44.1 0.5

Reference:

A.Tosstorff, M.G.Rudolph, J.C.Cole, M.Reutlinger, C.Kramer, H.Schaffhauser, A.Nilly, A.Flohr, B.Kuhn. A High Quality, Industrial Data Set For Binding Affinity Prediction: Performance Comparison in Different Early Drug Discovery Scenarios. J.Comput.Aided Mol.Des. V. 36 753 2022.
ISSN: ESSN 1573-4951
PubMed: 36153472
DOI: 10.1007/S10822-022-00478-X
Page generated: Thu Aug 1 14:13:59 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy