Atomistry » Fluorine » PDB 5sjr-5sog » 5sl7
Atomistry »
  Fluorine »
    PDB 5sjr-5sog »
      5sl7 »

Fluorine in PDB 5sl7: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z1186029914

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z1186029914, PDB code: 5sl7 was solved by N.Imprachim, Y.Yosaatmadja, F.Von-Delft, C.Bountra, O.Gileadi, J.A.Newman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.22 / 1.84
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.686, 68.31, 138.449, 90, 90, 90
R / Rfree (%) 22.6 / 25.1

Other elements in 5sl7:

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z1186029914 also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z1186029914 (pdb code 5sl7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z1186029914, PDB code: 5sl7:

Fluorine binding site 1 out of 1 in 5sl7

Go back to Fluorine Binding Sites List in 5sl7
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z1186029914


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z1186029914 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F606

b:52.9
occ:0.70
F D:W0G606 0.0 52.9 0.7
C10 D:W0G606 1.4 53.5 0.7
C9 D:W0G606 2.3 53.2 0.7
C5 D:W0G606 2.4 54.3 0.7
O D:W0G606 2.8 55.9 0.7
N1 D:W0G606 2.8 55.2 0.7
C4 D:W0G606 3.1 55.6 0.7
CB D:LEU321 3.5 30.2 1.0
C8 D:W0G606 3.6 53.3 0.7
C6 D:W0G606 3.6 53.9 0.7
C D:LEU321 3.8 32.0 1.0
O D:LEU321 4.0 33.4 1.0
CD2 D:LEU322 4.0 36.2 1.0
N D:LEU322 4.0 32.0 1.0
C3 D:W0G606 4.1 55.5 0.7
C7 D:W0G606 4.1 53.4 0.7
CB D:ALA344 4.2 48.7 1.0
CG D:LEU322 4.3 34.8 1.0
CA D:LEU321 4.3 30.5 1.0
CA D:LEU322 4.4 32.6 1.0
C1 D:W0G606 4.4 55.7 0.7
CA D:ALA344 4.4 48.8 1.0
CD1 D:LEU321 4.6 31.6 1.0
CG D:LEU321 4.6 30.9 1.0
C2 D:W0G606 4.6 55.6 0.7
N D:ASP345 4.7 49.2 1.0
O D:LYS318 4.8 29.7 1.0
CB D:LEU322 5.0 32.8 1.0

Reference:

N.Imprachim, Y.Yosaatmadja, F.Von-Delft, C.Bountra, O.Gileadi, J.A.Newman. Pandda Analysis Group Deposition To Be Published.
Page generated: Thu Aug 1 14:36:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy