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Fluorine in PDB 5slh: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z65532537

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z65532537, PDB code: 5slh was solved by N.Imprachim, Y.Yosaatmadja, F.Von-Delft, C.Bountra, O.Gileadi, J.A.Newman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.29 / 1.82
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.502, 67.783, 138.589, 90, 90, 90
R / Rfree (%) 23.8 / 26.4

Other elements in 5slh:

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z65532537 also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z65532537 (pdb code 5slh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z65532537, PDB code: 5slh:

Fluorine binding site 1 out of 1 in 5slh

Go back to Fluorine Binding Sites List in 5slh
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z65532537


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP14 in Complex with Z65532537 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F606

b:48.3
occ:0.72
F1 D:LLU606 0.0 48.3 0.7
C8 D:LLU606 1.3 47.4 0.7
C3 D:LLU606 2.3 47.0 0.7
C7 D:LLU606 2.4 47.1 0.7
O1 D:LLU606 2.7 46.2 0.7
CG1 D:VAL263 3.1 49.7 1.0
O D:HOH976 3.5 41.0 1.0
C4 D:LLU606 3.6 46.9 0.7
C6 D:LLU606 3.6 47.1 0.7
C2 D:LLU606 4.1 45.4 0.7
C5 D:LLU606 4.1 46.9 0.7
O3 D:LLU606 4.5 43.6 0.7
NE2 D:HIS264 4.5 40.5 1.0
CD2 D:HIS264 4.5 39.7 1.0
CB D:VAL263 4.6 48.6 1.0
O D:VAL263 4.6 47.8 1.0
C1 D:LLU606 4.7 45.2 0.7
C9 D:LLU606 4.8 44.7 0.7
O D:HOH761 5.0 29.9 1.0

Reference:

N.Imprachim, Y.Yosaatmadja, F.Von-Delft, C.Bountra, O.Gileadi, J.A.Newman. Pandda Analysis Group Deposition To Be Published.
Page generated: Thu Aug 1 14:37:22 2024

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