Atomistry » Fluorine » PDB 5srx-5tbe » 5sry
Atomistry »
  Fluorine »
    PDB 5srx-5tbe »
      5sry »

Fluorine in PDB 5sry: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218:
3.4.19.121;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218, PDB code: 5sry was solved by G.J.Correy, J.S.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.69 / 1.05
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 88.742, 88.742, 39.436, 90, 90, 90
R / Rfree (%) 13.4 / 15.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218 (pdb code 5sry). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218, PDB code: 5sry:

Fluorine binding site 1 out of 1 in 5sry

Go back to Fluorine Binding Sites List in 5sry
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 NSP3 Macrodomain in Complex with Z5265428218 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:12.7
occ:0.50
 F01 A:RIW201 0.0 12.7 0.5
O A:HOH457 1.2 12.4 0.5
C02 A:RIW201 1.4 12.4 0.5
O A:HOH570 1.5 34.8 0.5
C07 A:RIW201 2.4 12.0 0.5
C03 A:RIW201 2.4 11.9 0.5
HB2 A:ALA52 2.6 14.1 0.5
HB2 A:ALA52 2.6 12.4 0.5
H071 A:RIW201 2.6 14.4 0.5
H031 A:RIW201 2.6 14.3 0.5
O A:HOH567 3.3 19.8 0.5
O A:HOH560 3.3 30.0 0.5
O A:HOH476 3.4 45.6 0.5
CB A:ALA52 3.5 11.8 0.5
CB A:ALA52 3.5 10.3 0.5
C06 A:RIW201 3.6 11.8 0.5
HB1 A:ALA52 3.6 14.1 0.5
C04 A:RIW201 3.7 11.5 0.5
O A:HOH557 3.7 32.9 0.5
HB1 A:ALA52 3.8 12.4 0.5
O A:HOH555 3.8 33.6 0.5
HB3 A:ALA52 3.9 14.1 0.5
HB3 A:ALA52 3.9 12.4 0.5
O A:HOH328 4.0 40.5 0.5
O A:GLY48 4.0 6.8 0.5
O A:GLY48 4.0 17.1 0.5
C05 A:RIW201 4.1 11.7 0.5
HA2 A:GLY48 4.5 20.5 0.5
HA A:ALA52 4.5 10.4 0.5
CA A:ALA52 4.5 8.7 0.5
H A:ALA52 4.5 9.4 0.5
H041 A:RIW201 4.6 13.8 0.5
HA A:ALA52 4.6 13.3 0.5
CA A:ALA52 4.6 11.1 0.5
H A:GLY48 4.6 20.8 0.5
C A:GLY48 4.6 16.6 0.5
H A:ALA52 4.7 13.6 0.5
C A:GLY48 4.7 7.0 0.5
N A:ALA52 4.8 7.8 0.5
O A:HOH523 4.8 30.8 0.5
HA2 A:GLY48 4.8 9.8 0.5
N08 A:RIW201 4.9 11.1 0.5
CA A:GLY48 4.9 17.1 0.5
N A:ALA52 4.9 11.3 0.5
N A:GLY48 5.0 17.3 0.5

Reference:

G.J.Correy, J.S.Fraser. Ligand Screen Against Sars-Cov-2 NSP3 Macrodomain To Be Published.
Page generated: Thu Aug 1 14:55:49 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy