Fluorine in PDB 5sup: Structure of Mrna Export Factors
Enzymatic activity of Structure of Mrna Export Factors
All present enzymatic activity of Structure of Mrna Export Factors:
3.6.4.13;
Protein crystallography data
The structure of Structure of Mrna Export Factors, PDB code: 5sup
was solved by
Y.Ren,
P.Schmiege,
G.Blobel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.67 /
2.60
|
|
Space group
|
P 31 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
99.346,
99.346,
247.469,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
21.9 /
26.8
|
Other elements in 5sup:
The structure of Structure of Mrna Export Factors also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Mrna Export Factors
(pdb code 5sup). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the
Structure of Mrna Export Factors, PDB code: 5sup:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Fluorine binding site 1 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 1 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:41.8
occ:1.00
|
F1
|
A:BEF1001
|
0.0
|
41.8
|
1.0
|
|
BE
|
A:BEF1001
|
1.5
|
34.6
|
1.0
|
|
NH2
|
A:ARG396
|
2.4
|
35.8
|
1.0
|
|
F3
|
A:BEF1001
|
2.5
|
38.3
|
1.0
|
|
F2
|
A:BEF1001
|
2.6
|
34.4
|
1.0
|
|
NH1
|
A:ARG396
|
2.7
|
35.8
|
1.0
|
|
O2B
|
A:ADP1000
|
2.7
|
38.8
|
1.0
|
|
NH2
|
A:ARG399
|
2.8
|
35.4
|
1.0
|
|
CZ
|
A:ARG396
|
3.0
|
35.8
|
1.0
|
|
O
|
A:HOH1109
|
3.2
|
33.8
|
1.0
|
|
CZ
|
A:ARG399
|
3.7
|
37.1
|
1.0
|
|
NH1
|
A:ARG399
|
3.7
|
36.5
|
1.0
|
|
N
|
A:GLY109
|
3.8
|
31.1
|
1.0
|
|
CB
|
A:SER108
|
3.9
|
37.2
|
1.0
|
|
CA
|
A:SER108
|
4.0
|
36.0
|
1.0
|
|
PB
|
A:ADP1000
|
4.2
|
30.9
|
1.0
|
|
N
|
A:GLY369
|
4.2
|
29.4
|
1.0
|
|
NE
|
A:ARG396
|
4.3
|
36.3
|
1.0
|
|
C
|
A:SER108
|
4.3
|
35.8
|
1.0
|
|
OG
|
A:SER108
|
4.4
|
45.0
|
1.0
|
|
CA
|
A:GLY369
|
4.4
|
36.3
|
1.0
|
|
MG
|
A:MG1002
|
4.5
|
24.6
|
1.0
|
|
CA
|
A:GLY109
|
4.6
|
28.5
|
1.0
|
|
O
|
A:HOH1112
|
4.6
|
35.8
|
1.0
|
|
O
|
A:GLY395
|
4.8
|
35.9
|
1.0
|
|
O
|
A:HOH1107
|
4.8
|
35.5
|
1.0
|
|
C
|
A:GLY369
|
4.9
|
31.6
|
1.0
|
|
O3B
|
A:ADP1000
|
4.9
|
37.5
|
1.0
|
|
NE
|
A:ARG399
|
4.9
|
41.0
|
1.0
|
|
OE2
|
A:GLU216
|
4.9
|
42.9
|
1.0
|
|
O
|
A:GLY369
|
5.0
|
37.5
|
1.0
|
|
O1B
|
A:ADP1000
|
5.0
|
30.5
|
1.0
|
|
Fluorine binding site 2 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 2 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:34.4
occ:1.00
|
F2
|
A:BEF1001
|
0.0
|
34.4
|
1.0
|
|
BE
|
A:BEF1001
|
1.6
|
34.6
|
1.0
|
|
F3
|
A:BEF1001
|
2.5
|
38.3
|
1.0
|
|
F1
|
A:BEF1001
|
2.6
|
41.8
|
1.0
|
|
O2B
|
A:ADP1000
|
2.6
|
38.8
|
1.0
|
|
NZ
|
A:LYS112
|
2.6
|
32.3
|
1.0
|
|
O
|
A:HOH1112
|
3.1
|
35.8
|
1.0
|
|
CA
|
A:SER108
|
3.3
|
36.0
|
1.0
|
|
O3B
|
A:ADP1000
|
3.4
|
37.5
|
1.0
|
|
PB
|
A:ADP1000
|
3.4
|
30.9
|
1.0
|
|
CE
|
A:LYS112
|
3.4
|
36.2
|
1.0
|
|
N
|
A:GLY109
|
3.5
|
31.1
|
1.0
|
|
CB
|
A:ALA248
|
3.9
|
43.5
|
1.0
|
|
C
|
A:SER108
|
3.9
|
35.8
|
1.0
|
|
O
|
A:LYS107
|
4.0
|
41.1
|
1.0
|
|
CB
|
A:SER108
|
4.0
|
37.2
|
1.0
|
|
MG
|
A:MG1002
|
4.1
|
24.6
|
1.0
|
|
N
|
A:SER108
|
4.1
|
42.3
|
1.0
|
|
O
|
A:HOH1111
|
4.1
|
30.4
|
1.0
|
|
O
|
A:HOH1109
|
4.1
|
33.8
|
1.0
|
|
O1B
|
A:ADP1000
|
4.2
|
30.5
|
1.0
|
|
OG
|
A:SER108
|
4.3
|
45.0
|
1.0
|
|
C
|
A:LYS107
|
4.3
|
42.8
|
1.0
|
|
NH2
|
A:ARG396
|
4.5
|
35.8
|
1.0
|
|
NH2
|
A:ARG399
|
4.6
|
35.4
|
1.0
|
|
O
|
A:ALA106
|
4.6
|
45.9
|
1.0
|
|
CA
|
A:GLY109
|
4.7
|
28.5
|
1.0
|
|
O3A
|
A:ADP1000
|
4.7
|
29.0
|
1.0
|
|
N
|
A:ALA248
|
4.7
|
46.4
|
1.0
|
|
CA
|
A:ALA248
|
4.8
|
49.6
|
1.0
|
|
CD
|
A:LYS112
|
4.8
|
41.5
|
1.0
|
|
Fluorine binding site 3 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 3 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1001
b:38.3
occ:1.00
|
F3
|
A:BEF1001
|
0.0
|
38.3
|
1.0
|
|
BE
|
A:BEF1001
|
1.5
|
34.6
|
1.0
|
|
MG
|
A:MG1002
|
2.2
|
24.6
|
1.0
|
|
O2B
|
A:ADP1000
|
2.5
|
38.8
|
1.0
|
|
F2
|
A:BEF1001
|
2.5
|
34.4
|
1.0
|
|
F1
|
A:BEF1001
|
2.5
|
41.8
|
1.0
|
|
O
|
A:HOH1111
|
2.9
|
30.4
|
1.0
|
|
O
|
A:HOH1104
|
3.0
|
27.9
|
1.0
|
|
O
|
A:HOH1109
|
3.2
|
33.8
|
1.0
|
|
O
|
A:HOH1107
|
3.3
|
35.5
|
1.0
|
|
O
|
A:HOH1112
|
3.3
|
35.8
|
1.0
|
|
OE2
|
A:GLU216
|
3.3
|
42.9
|
1.0
|
|
PB
|
A:ADP1000
|
3.4
|
30.9
|
1.0
|
|
O1B
|
A:ADP1000
|
3.4
|
30.5
|
1.0
|
|
CA
|
A:GLY369
|
3.7
|
36.3
|
1.0
|
|
N
|
A:GLY369
|
4.0
|
29.4
|
1.0
|
|
NZ
|
A:LYS112
|
4.2
|
32.3
|
1.0
|
|
O3B
|
A:ADP1000
|
4.2
|
37.5
|
1.0
|
|
NH1
|
A:ARG396
|
4.3
|
35.8
|
1.0
|
|
O
|
A:HOH1102
|
4.3
|
32.6
|
1.0
|
|
CE
|
A:LYS112
|
4.4
|
36.2
|
1.0
|
|
CD
|
A:GLU216
|
4.4
|
41.1
|
1.0
|
|
NH2
|
A:ARG396
|
4.4
|
35.8
|
1.0
|
|
O
|
A:GLY369
|
4.6
|
37.5
|
1.0
|
|
C
|
A:GLY369
|
4.6
|
31.6
|
1.0
|
|
O3A
|
A:ADP1000
|
4.7
|
29.0
|
1.0
|
|
OE1
|
A:GLU216
|
4.8
|
35.5
|
1.0
|
|
CZ
|
A:ARG396
|
4.8
|
35.8
|
1.0
|
|
O1A
|
A:ADP1000
|
4.9
|
35.0
|
1.0
|
|
NH1
|
A:ARG399
|
4.9
|
36.5
|
1.0
|
|
NH2
|
A:ARG399
|
5.0
|
35.4
|
1.0
|
|
Fluorine binding site 4 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 4 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F2001
b:41.2
occ:1.00
|
F1
|
B:BEF2001
|
0.0
|
41.2
|
1.0
|
|
BE
|
B:BEF2001
|
1.5
|
40.9
|
1.0
|
|
O3B
|
B:ADP2000
|
2.3
|
46.1
|
1.0
|
|
F3
|
B:BEF2001
|
2.5
|
42.0
|
1.0
|
|
NH1
|
B:ARG399
|
2.5
|
42.8
|
1.0
|
|
F2
|
B:BEF2001
|
2.6
|
31.6
|
1.0
|
|
NH1
|
B:ARG396
|
2.7
|
40.4
|
1.0
|
|
NH2
|
B:ARG396
|
2.7
|
42.9
|
1.0
|
|
NH2
|
B:ARG399
|
3.1
|
34.7
|
1.0
|
|
CZ
|
B:ARG396
|
3.1
|
34.2
|
1.0
|
|
CZ
|
B:ARG399
|
3.2
|
47.5
|
1.0
|
|
N
|
B:GLY109
|
3.8
|
48.4
|
1.0
|
|
PB
|
B:ADP2000
|
3.8
|
36.5
|
1.0
|
|
N
|
B:GLY369
|
4.0
|
39.4
|
1.0
|
|
CA
|
B:GLY369
|
4.0
|
38.5
|
1.0
|
|
O
|
B:HOH2106
|
4.1
|
28.1
|
1.0
|
|
MG
|
B:MG2002
|
4.2
|
37.6
|
1.0
|
|
CA
|
B:GLY109
|
4.4
|
40.3
|
1.0
|
|
O
|
B:GLY369
|
4.4
|
37.2
|
1.0
|
|
C
|
B:GLY369
|
4.4
|
33.4
|
1.0
|
|
NE
|
B:ARG396
|
4.4
|
39.8
|
1.0
|
|
CA
|
B:SER108
|
4.5
|
42.9
|
1.0
|
|
O2B
|
B:ADP2000
|
4.5
|
41.0
|
1.0
|
|
NE
|
B:ARG399
|
4.5
|
41.7
|
1.0
|
|
CB
|
B:SER108
|
4.5
|
39.9
|
1.0
|
|
C
|
B:SER108
|
4.5
|
50.0
|
1.0
|
|
NZ
|
B:LYS112
|
4.6
|
38.2
|
1.0
|
|
O3A
|
B:ADP2000
|
4.6
|
46.9
|
1.0
|
|
O1B
|
B:ADP2000
|
4.7
|
37.0
|
1.0
|
|
O
|
B:HOH2109
|
4.8
|
35.6
|
1.0
|
|
O2A
|
B:ADP2000
|
4.8
|
40.0
|
1.0
|
|
O
|
B:GLY395
|
4.9
|
41.7
|
1.0
|
|
OE2
|
B:GLU216
|
5.0
|
36.6
|
1.0
|
|
Fluorine binding site 5 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 5 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F2001
b:31.6
occ:1.00
|
F2
|
B:BEF2001
|
0.0
|
31.6
|
1.0
|
|
BE
|
B:BEF2001
|
1.6
|
40.9
|
1.0
|
|
NZ
|
B:LYS112
|
2.3
|
38.2
|
1.0
|
|
F3
|
B:BEF2001
|
2.5
|
42.0
|
1.0
|
|
F1
|
B:BEF2001
|
2.6
|
41.2
|
1.0
|
|
O3B
|
B:ADP2000
|
2.7
|
46.1
|
1.0
|
|
O
|
B:HOH2109
|
2.9
|
35.6
|
1.0
|
|
PB
|
B:ADP2000
|
3.5
|
36.5
|
1.0
|
|
O1B
|
B:ADP2000
|
3.6
|
37.0
|
1.0
|
|
CA
|
B:SER108
|
3.7
|
42.9
|
1.0
|
|
CE
|
B:LYS112
|
3.7
|
39.9
|
1.0
|
|
N
|
B:GLY109
|
3.8
|
48.4
|
1.0
|
|
O
|
B:HOH2108
|
3.8
|
37.6
|
1.0
|
|
MG
|
B:MG2002
|
4.0
|
37.6
|
1.0
|
|
CB
|
B:ALA248
|
4.1
|
43.5
|
1.0
|
|
O2B
|
B:ADP2000
|
4.1
|
41.0
|
1.0
|
|
NH2
|
B:ARG396
|
4.1
|
42.9
|
1.0
|
|
CB
|
B:SER108
|
4.2
|
39.9
|
1.0
|
|
C
|
B:SER108
|
4.3
|
50.0
|
1.0
|
|
OG
|
B:SER108
|
4.5
|
48.1
|
1.0
|
|
O
|
B:LYS107
|
4.5
|
45.5
|
1.0
|
|
N
|
B:SER108
|
4.6
|
45.7
|
1.0
|
|
OE2
|
B:GLU216
|
4.6
|
36.6
|
1.0
|
|
CD
|
B:LYS112
|
4.7
|
39.4
|
1.0
|
|
NH1
|
B:ARG399
|
4.7
|
42.8
|
1.0
|
|
ND1
|
B:HIS392
|
4.8
|
48.6
|
1.0
|
|
N
|
B:ALA248
|
4.9
|
46.1
|
1.0
|
|
C
|
B:LYS107
|
4.9
|
44.4
|
1.0
|
|
CA
|
B:GLY109
|
4.9
|
40.3
|
1.0
|
|
O3A
|
B:ADP2000
|
4.9
|
46.9
|
1.0
|
|
CE1
|
B:HIS392
|
5.0
|
48.7
|
1.0
|
|
Fluorine binding site 6 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 6 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F2001
b:42.0
occ:1.00
|
F3
|
B:BEF2001
|
0.0
|
42.0
|
1.0
|
|
BE
|
B:BEF2001
|
1.5
|
40.9
|
1.0
|
|
MG
|
B:MG2002
|
1.9
|
37.6
|
1.0
|
|
F2
|
B:BEF2001
|
2.5
|
31.6
|
1.0
|
|
F1
|
B:BEF2001
|
2.5
|
41.2
|
1.0
|
|
O3B
|
B:ADP2000
|
2.6
|
46.1
|
1.0
|
|
O
|
B:HOH2108
|
2.7
|
37.6
|
1.0
|
|
O
|
B:HOH2103
|
2.8
|
25.7
|
1.0
|
|
O
|
B:HOH2106
|
2.9
|
28.1
|
1.0
|
|
O2B
|
B:ADP2000
|
3.1
|
41.0
|
1.0
|
|
OE2
|
B:GLU216
|
3.3
|
36.6
|
1.0
|
|
PB
|
B:ADP2000
|
3.3
|
36.5
|
1.0
|
|
CA
|
B:GLY369
|
3.4
|
38.5
|
1.0
|
|
O
|
B:HOH2109
|
3.5
|
35.6
|
1.0
|
|
N
|
B:GLY369
|
3.8
|
39.4
|
1.0
|
|
NZ
|
B:LYS112
|
3.8
|
38.2
|
1.0
|
|
O
|
B:HOH2101
|
4.0
|
33.7
|
1.0
|
|
O
|
B:GLY369
|
4.2
|
37.2
|
1.0
|
|
O1B
|
B:ADP2000
|
4.3
|
37.0
|
1.0
|
|
C
|
B:GLY369
|
4.3
|
33.4
|
1.0
|
|
NH2
|
B:ARG399
|
4.4
|
34.7
|
1.0
|
|
CD
|
B:GLU216
|
4.4
|
46.4
|
1.0
|
|
NH1
|
B:ARG396
|
4.4
|
40.4
|
1.0
|
|
NH2
|
B:ARG396
|
4.5
|
42.9
|
1.0
|
|
O3A
|
B:ADP2000
|
4.6
|
46.9
|
1.0
|
|
O2A
|
B:ADP2000
|
4.7
|
40.0
|
1.0
|
|
NH1
|
B:ARG399
|
4.9
|
42.8
|
1.0
|
|
OE1
|
B:GLU216
|
4.9
|
37.1
|
1.0
|
|
CZ
|
B:ARG396
|
4.9
|
34.2
|
1.0
|
|
Fluorine binding site 7 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 7 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F3001
b:47.9
occ:1.00
|
F1
|
C:BEF3001
|
0.0
|
47.9
|
1.0
|
|
BE
|
C:BEF3001
|
1.5
|
47.4
|
1.0
|
|
O2B
|
C:ADP3000
|
2.3
|
52.9
|
1.0
|
|
F3
|
C:BEF3001
|
2.5
|
53.1
|
1.0
|
|
F2
|
C:BEF3001
|
2.6
|
51.4
|
1.0
|
|
NH1
|
C:ARG399
|
2.6
|
45.6
|
1.0
|
|
NH2
|
C:ARG396
|
2.7
|
53.3
|
1.0
|
|
NH1
|
C:ARG396
|
3.0
|
39.5
|
1.0
|
|
CZ
|
C:ARG396
|
3.3
|
42.7
|
1.0
|
|
NH2
|
C:ARG399
|
3.3
|
44.5
|
1.0
|
|
CZ
|
C:ARG399
|
3.4
|
47.2
|
1.0
|
|
N
|
C:GLY109
|
3.6
|
45.5
|
1.0
|
|
PB
|
C:ADP3000
|
3.8
|
47.0
|
1.0
|
|
CA
|
C:SER108
|
4.0
|
55.2
|
1.0
|
|
CB
|
C:SER108
|
4.1
|
51.9
|
1.0
|
|
C
|
C:SER108
|
4.3
|
55.6
|
1.0
|
|
CA
|
C:GLY109
|
4.3
|
50.0
|
1.0
|
|
O
|
C:HOH3104
|
4.3
|
37.5
|
1.0
|
|
N
|
C:GLY369
|
4.3
|
38.0
|
1.0
|
|
CA
|
C:GLY369
|
4.4
|
38.2
|
1.0
|
|
MG
|
C:MG3002
|
4.4
|
44.8
|
1.0
|
|
O1B
|
C:ADP3000
|
4.6
|
47.8
|
1.0
|
|
OG
|
C:SER108
|
4.6
|
50.2
|
1.0
|
|
NE
|
C:ARG396
|
4.6
|
42.5
|
1.0
|
|
O3A
|
C:ADP3000
|
4.6
|
41.1
|
1.0
|
|
O3B
|
C:ADP3000
|
4.6
|
46.3
|
1.0
|
|
NE
|
C:ARG399
|
4.7
|
38.9
|
1.0
|
|
O
|
C:GLY369
|
4.8
|
47.4
|
1.0
|
|
C
|
C:GLY369
|
4.8
|
37.2
|
1.0
|
|
NZ
|
C:LYS112
|
4.9
|
44.5
|
1.0
|
|
O1A
|
C:ADP3000
|
4.9
|
53.2
|
1.0
|
|
OE2
|
C:GLU216
|
5.0
|
42.2
|
1.0
|
|
O
|
C:GLY395
|
5.0
|
47.8
|
1.0
|
|
O
|
C:HOH3102
|
5.0
|
44.2
|
1.0
|
|
Fluorine binding site 8 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 8 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F3001
b:51.4
occ:1.00
|
F2
|
C:BEF3001
|
0.0
|
51.4
|
1.0
|
|
BE
|
C:BEF3001
|
1.6
|
47.4
|
1.0
|
|
F3
|
C:BEF3001
|
2.5
|
53.1
|
1.0
|
|
F1
|
C:BEF3001
|
2.6
|
47.9
|
1.0
|
|
O2B
|
C:ADP3000
|
2.9
|
52.9
|
1.0
|
|
NZ
|
C:LYS112
|
3.0
|
44.5
|
1.0
|
|
CE
|
C:LYS112
|
3.5
|
47.4
|
1.0
|
|
CB
|
C:ALA248
|
3.5
|
50.9
|
1.0
|
|
CA
|
C:SER108
|
3.7
|
55.2
|
1.0
|
|
PB
|
C:ADP3000
|
3.8
|
47.0
|
1.0
|
|
O
|
C:HOH3105
|
3.8
|
44.1
|
1.0
|
|
O3B
|
C:ADP3000
|
3.9
|
46.3
|
1.0
|
|
N
|
C:GLY109
|
4.1
|
45.5
|
1.0
|
|
MG
|
C:MG3002
|
4.1
|
44.8
|
1.0
|
|
NH2
|
C:ARG396
|
4.2
|
53.3
|
1.0
|
|
CB
|
C:SER108
|
4.2
|
51.9
|
1.0
|
|
OG
|
C:SER108
|
4.3
|
50.2
|
1.0
|
|
N
|
C:ALA248
|
4.4
|
64.7
|
1.0
|
|
O1B
|
C:ADP3000
|
4.4
|
47.8
|
1.0
|
|
OE2
|
C:GLU216
|
4.5
|
42.2
|
1.0
|
|
CA
|
C:ALA248
|
4.5
|
51.4
|
1.0
|
|
ND1
|
C:HIS392
|
4.5
|
40.1
|
1.0
|
|
N
|
C:SER108
|
4.5
|
63.4
|
1.0
|
|
C
|
C:SER108
|
4.5
|
55.6
|
1.0
|
|
CE1
|
C:HIS392
|
4.6
|
54.0
|
1.0
|
|
O
|
C:LYS107
|
4.6
|
59.5
|
1.0
|
|
O
|
C:ALA106
|
4.8
|
58.4
|
1.0
|
|
C
|
C:LYS107
|
4.8
|
67.6
|
1.0
|
|
O
|
C:HOH3102
|
4.9
|
44.2
|
1.0
|
|
CD
|
C:LYS112
|
5.0
|
55.2
|
1.0
|
|
NH1
|
C:ARG399
|
5.0
|
45.6
|
1.0
|
|
Fluorine binding site 9 out
of 9 in 5sup
Go back to
Fluorine Binding Sites List in 5sup
Fluorine binding site 9 out
of 9 in the Structure of Mrna Export Factors
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structure of Mrna Export Factors within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F3001
b:53.1
occ:1.00
|
F3
|
C:BEF3001
|
0.0
|
53.1
|
1.0
|
|
BE
|
C:BEF3001
|
1.5
|
47.4
|
1.0
|
|
MG
|
C:MG3002
|
2.1
|
44.8
|
1.0
|
|
O2B
|
C:ADP3000
|
2.4
|
52.9
|
1.0
|
|
F2
|
C:BEF3001
|
2.5
|
51.4
|
1.0
|
|
F1
|
C:BEF3001
|
2.5
|
47.9
|
1.0
|
|
O
|
C:HOH3102
|
2.7
|
44.2
|
1.0
|
|
O
|
C:HOH3105
|
2.7
|
44.1
|
1.0
|
|
O
|
C:HOH3104
|
2.8
|
37.5
|
1.0
|
|
O1B
|
C:ADP3000
|
3.1
|
47.8
|
1.0
|
|
PB
|
C:ADP3000
|
3.2
|
47.0
|
1.0
|
|
OE2
|
C:GLU216
|
3.3
|
42.2
|
1.0
|
|
CA
|
C:GLY369
|
3.7
|
38.2
|
1.0
|
|
O3B
|
C:ADP3000
|
4.1
|
46.3
|
1.0
|
|
N
|
C:GLY369
|
4.1
|
38.0
|
1.0
|
|
NZ
|
C:LYS112
|
4.3
|
44.5
|
1.0
|
|
O
|
C:HOH3101
|
4.3
|
42.2
|
1.0
|
|
CE
|
C:LYS112
|
4.4
|
47.4
|
1.0
|
|
NH2
|
C:ARG399
|
4.4
|
44.5
|
1.0
|
|
CD
|
C:GLU216
|
4.4
|
40.8
|
1.0
|
|
O3A
|
C:ADP3000
|
4.5
|
41.1
|
1.0
|
|
O
|
C:GLY369
|
4.5
|
47.4
|
1.0
|
|
NH2
|
C:ARG396
|
4.5
|
53.3
|
1.0
|
|
NH1
|
C:ARG396
|
4.6
|
39.5
|
1.0
|
|
C
|
C:GLY369
|
4.6
|
37.2
|
1.0
|
|
O1A
|
C:ADP3000
|
4.6
|
53.2
|
1.0
|
|
NH1
|
C:ARG399
|
4.9
|
45.6
|
1.0
|
|
OE1
|
C:GLU216
|
5.0
|
44.6
|
1.0
|
|
Reference:
Y.Ren,
P.Schmiege,
G.Blobel.
Structural and Biochemical Analyses of the Dead-Box Atpase SUB2 in Association with Tho or YRA1. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28059701
DOI: 10.7554/ELIFE.20070
Page generated: Thu Aug 1 14:57:11 2024
|
