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Fluorine in PDB 5t3q: Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor

Enzymatic activity of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor

All present enzymatic activity of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor:
2.7.10.1;

Protein crystallography data

The structure of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor, PDB code: 5t3q was solved by S.F.Bellon, D.A.Whittington, A.M.Long, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 71.627, 82.272, 127.139, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor (pdb code 5t3q). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor, PDB code: 5t3q:

Fluorine binding site 1 out of 1 in 5t3q

Go back to Fluorine Binding Sites List in 5t3q
Fluorine binding site 1 out of 1 in the Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1401

b:38.5
occ:1.00
F1 A:75H1401 0.0 38.5 1.0
C11 A:75H1401 1.3 30.5 1.0
C12 A:75H1401 2.4 29.4 1.0
C10 A:75H1401 2.4 27.3 1.0
O1 A:75H1401 2.7 25.2 1.0
CG2 A:VAL1092 3.2 27.2 1.0
CG1 A:VAL1092 3.6 25.9 1.0
C9 A:75H1401 3.6 23.5 1.0
C13 A:75H1401 3.6 28.2 1.0
C15 A:75H1401 3.6 27.6 1.0
CB A:LYS1110 3.8 30.7 1.0
CD1 A:LEU1157 3.9 30.8 1.0
CB A:VAL1092 4.0 26.9 1.0
C8 A:75H1401 4.0 24.3 1.0
CD A:LYS1110 4.1 36.6 1.0
C14 A:75H1401 4.1 26.7 1.0
CB A:PHE1089 4.1 66.8 1.0
O A:PHE1089 4.3 51.5 1.0
CG A:LYS1110 4.5 33.1 1.0
C5 A:75H1401 4.6 23.6 1.0
CG A:PHE1089 4.7 64.7 1.0
N2 A:75H1401 4.7 28.2 1.0
CB A:ALA1108 4.7 22.4 1.0
CA A:LYS1110 4.8 27.9 1.0
C6 A:75H1401 4.9 25.2 1.0
N A:LYS1110 4.9 27.3 1.0
CD1 A:PHE1089 5.0 60.9 1.0

Reference:

A.A.Boezio, E.A.Peterson, J.-C.Harmange. Discovery of AMG337: Using Structure Guided Scaffold Hydridization to Optimize Physicochemical Properties and Target Coverage of A Met Kinase Inhibitor To Be Published.
Page generated: Tue Jul 15 07:48:05 2025

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