Atomistry » Fluorine » PDB 5srx-5tbe » 5t3q
Atomistry »
  Fluorine »
    PDB 5srx-5tbe »
      5t3q »

Fluorine in PDB 5t3q: Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor

Enzymatic activity of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor

All present enzymatic activity of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor:
2.7.10.1;

Protein crystallography data

The structure of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor, PDB code: 5t3q was solved by S.F.Bellon, D.A.Whittington, A.M.Long, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 71.627, 82.272, 127.139, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor (pdb code 5t3q). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor, PDB code: 5t3q:

Fluorine binding site 1 out of 1 in 5t3q

Go back to Fluorine Binding Sites List in 5t3q
Fluorine binding site 1 out of 1 in the Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the C-Met Kinase Domain in Complex with A Pyrazolone Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1401

b:38.5
occ:1.00
F1 A:75H1401 0.0 38.5 1.0
C11 A:75H1401 1.3 30.5 1.0
C12 A:75H1401 2.4 29.4 1.0
C10 A:75H1401 2.4 27.3 1.0
O1 A:75H1401 2.7 25.2 1.0
CG2 A:VAL1092 3.2 27.2 1.0
CG1 A:VAL1092 3.6 25.9 1.0
C9 A:75H1401 3.6 23.5 1.0
C13 A:75H1401 3.6 28.2 1.0
C15 A:75H1401 3.6 27.6 1.0
CB A:LYS1110 3.8 30.7 1.0
CD1 A:LEU1157 3.9 30.8 1.0
CB A:VAL1092 4.0 26.9 1.0
C8 A:75H1401 4.0 24.3 1.0
CD A:LYS1110 4.1 36.6 1.0
C14 A:75H1401 4.1 26.7 1.0
CB A:PHE1089 4.1 66.8 1.0
O A:PHE1089 4.3 51.5 1.0
CG A:LYS1110 4.5 33.1 1.0
C5 A:75H1401 4.6 23.6 1.0
CG A:PHE1089 4.7 64.7 1.0
N2 A:75H1401 4.7 28.2 1.0
CB A:ALA1108 4.7 22.4 1.0
CA A:LYS1110 4.8 27.9 1.0
C6 A:75H1401 4.9 25.2 1.0
N A:LYS1110 4.9 27.3 1.0
CD1 A:PHE1089 5.0 60.9 1.0

Reference:

A.A.Boezio, E.A.Peterson, J.-C.Harmange. Discovery of AMG337: Using Structure Guided Scaffold Hydridization to Optimize Physicochemical Properties and Target Coverage of A Met Kinase Inhibitor To Be Published.
Page generated: Thu Aug 1 15:02:58 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy