Fluorine in PDB 5t4k: Plp and Gaba Trigger Gabr-Mediated Transcription Regulation in Bacillus Subsidies Via External Aldimine Formation

The structure of Plp and Gaba Trigger Gabr-Mediated Transcription Regulation in Bacillus Subsidies Via External Aldimine Formation, PDB code: 5t4k was solved by R.Wu, R.Sanishvili, B.R.Belitsky, J.I.Juncosa, H.V.Le, H.J.S.Lehrer, M.Farley, R.B.Silverman, G.A.Petsko, D.Ringe, D.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.80 / 2.25
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	96.630, 127.530, 67.580, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 23.7

The binding sites of Fluorine atom in the Plp and Gaba Trigger Gabr-Mediated Transcription Regulation in Bacillus Subsidies Via External Aldimine Formation (pdb code 5t4k). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Plp and Gaba Trigger Gabr-Mediated Transcription Regulation in Bacillus Subsidies Via External Aldimine Formation, PDB code: 5t4k:

Fluorine binding site 1 out of 1 in the Plp and Gaba Trigger Gabr-Mediated Transcription Regulation in Bacillus Subsidies Via External Aldimine Formation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Plp and Gaba Trigger Gabr-Mediated Transcription Regulation in Bacillus Subsidies Via External Aldimine Formation within 5.0Å range: probe atom residue distance (Å) B Occ A:F501 b:38.8 occ:1.00 F1 A:76U501 0.0 38.8 1.0 C9 A:76U501 1.4 35.3 1.0 C8 A:76U501 2.4 42.8 1.0 C10 A:76U501 3.0 43.1 1.0 CA A:MET115 3.2 45.4 1.0 CB A:MET115 3.4 44.1 1.0 CG A:MET115 3.5 47.3 1.0 N1 A:76U501 3.6 44.0 1.0 C11 A:76U501 3.6 38.8 1.0 C7 A:76U501 3.8 41.0 1.0 O A:MET115 3.9 50.4 1.0 C A:MET115 3.9 45.3 1.0 O A:HIS114 3.9 41.8 1.0 OH A:TYR281 3.9 33.2 1.0 N A:MET115 4.2 43.3 1.0 O A:HOH667 4.3 32.3 1.0 C A:HIS114 4.5 40.2 1.0 SD A:MET115 4.5 43.2 1.0 CD2 A:HIS114 4.9 30.5 1.0 C12 A:76U501 5.0 30.4 1.0

R.Wu, R.Sanishvili, B.R.Belitsky, J.I.Juncosa, H.V.Le, H.J.Lehrer, M.Farley, R.B.Silverman, G.A.Petsko, D.Ringe, D.Liu. Plp and Gaba Trigger Gabr-Mediated Transcription Regulation in Bacillus Subtilis Via External Aldimine Formation. Proc. Natl. Acad. Sci. V. 114 3891 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28348215
DOI: 10.1073/PNAS.1703019114