Fluorine in PDB 5tgy: uc(Nmr) Structure of Holo-PS1
Other elements in 5tgy:
The structure of uc(Nmr) Structure of Holo-PS1 also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the uc(Nmr) Structure of Holo-PS1
(pdb code 5tgy). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
uc(Nmr) Structure of Holo-PS1, PDB code: 5tgy:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 1 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F21A
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FA
|
A:7BU201
|
1.3
|
0.0
|
1.0
|
F22A
|
A:7BU201
|
2.1
|
0.0
|
1.0
|
F23A
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
HA
|
A:ALA56
|
2.4
|
0.0
|
1.0
|
CHA
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
H2A1
|
A:7BU201
|
2.7
|
0.0
|
1.0
|
HD12
|
A:LEU6
|
2.8
|
0.0
|
1.0
|
HB1
|
A:ALA56
|
3.0
|
0.0
|
1.0
|
C1A
|
A:7BU201
|
3.1
|
0.0
|
1.0
|
C2A
|
A:7BU201
|
3.2
|
0.0
|
1.0
|
HD1
|
A:PHE50
|
3.2
|
0.0
|
1.0
|
CA
|
A:ALA56
|
3.3
|
0.0
|
1.0
|
H3D1
|
A:7BU201
|
3.3
|
0.0
|
1.0
|
HD11
|
A:LEU6
|
3.3
|
0.0
|
1.0
|
C4D
|
A:7BU201
|
3.3
|
0.0
|
1.0
|
HB2
|
A:ALA56
|
3.3
|
0.0
|
1.0
|
CB
|
A:ALA56
|
3.4
|
0.0
|
1.0
|
CD1
|
A:LEU6
|
3.5
|
0.0
|
1.0
|
CD1
|
A:PHE50
|
3.6
|
0.0
|
1.0
|
C3D
|
A:7BU201
|
3.6
|
0.0
|
1.0
|
H
|
A:ALA57
|
3.7
|
0.0
|
1.0
|
HB2
|
A:PHE50
|
3.9
|
0.0
|
1.0
|
H
|
A:ALA56
|
3.9
|
0.0
|
1.0
|
HE1
|
A:PHE50
|
4.0
|
0.0
|
1.0
|
HD13
|
A:LEU6
|
4.0
|
0.0
|
1.0
|
CE1
|
A:PHE50
|
4.0
|
0.0
|
1.0
|
N
|
A:ALA56
|
4.0
|
0.0
|
1.0
|
CG
|
A:PHE50
|
4.3
|
0.0
|
1.0
|
NA1
|
A:7BU201
|
4.4
|
0.0
|
1.0
|
C
|
A:ALA56
|
4.4
|
0.0
|
1.0
|
N
|
A:ALA57
|
4.4
|
0.0
|
1.0
|
HD23
|
A:LEU6
|
4.4
|
0.0
|
1.0
|
HB3
|
A:ALA56
|
4.4
|
0.0
|
1.0
|
C3A
|
A:7BU201
|
4.4
|
0.0
|
1.0
|
ND4
|
A:7BU201
|
4.6
|
0.0
|
1.0
|
HB2
|
A:ALA62
|
4.6
|
0.0
|
1.0
|
CB
|
A:PHE50
|
4.6
|
0.0
|
1.0
|
HD21
|
A:LEU6
|
4.6
|
0.0
|
1.0
|
HE2
|
A:PHE3
|
4.7
|
0.0
|
1.0
|
CG
|
A:LEU6
|
4.8
|
0.0
|
1.0
|
CD2
|
A:LEU6
|
4.8
|
0.0
|
1.0
|
HD2
|
A:PHE3
|
4.9
|
0.0
|
1.0
|
C2D
|
A:7BU201
|
4.9
|
0.0
|
1.0
|
CZ
|
A:PHE50
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 2 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F21B
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FB
|
A:7BU201
|
1.4
|
0.0
|
1.0
|
F22B
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
F23B
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
CHB
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
H2B1
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HG21
|
A:VAL69
|
2.7
|
0.0
|
1.0
|
HB2
|
A:ARG47
|
2.7
|
0.0
|
1.0
|
C1B
|
A:7BU201
|
2.8
|
0.0
|
1.0
|
C2B
|
A:7BU201
|
2.8
|
0.0
|
1.0
|
HD2
|
A:ARG47
|
3.1
|
0.0
|
1.0
|
HG23
|
A:VAL69
|
3.2
|
0.0
|
1.0
|
CG2
|
A:VAL69
|
3.2
|
0.0
|
1.0
|
HG22
|
A:VAL69
|
3.3
|
0.0
|
1.0
|
HG21
|
A:ILE43
|
3.3
|
0.0
|
1.0
|
HG3
|
A:ARG47
|
3.4
|
0.0
|
1.0
|
HD2
|
A:HIS46
|
3.4
|
0.0
|
1.0
|
CB
|
A:ARG47
|
3.6
|
0.0
|
1.0
|
C4A
|
A:7BU201
|
3.6
|
0.0
|
1.0
|
CG
|
A:ARG47
|
3.8
|
0.0
|
1.0
|
HA
|
A:ARG47
|
3.8
|
0.0
|
1.0
|
HE
|
A:ARG47
|
3.8
|
0.0
|
1.0
|
CD
|
A:ARG47
|
3.8
|
0.0
|
1.0
|
H3A1
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
O
|
A:GLY65
|
4.1
|
0.0
|
1.0
|
HG22
|
A:ILE43
|
4.1
|
0.0
|
1.0
|
C3B
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
NB2
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
CG2
|
A:ILE43
|
4.2
|
0.0
|
1.0
|
CA
|
A:ARG47
|
4.2
|
0.0
|
1.0
|
NE
|
A:ARG47
|
4.3
|
0.0
|
1.0
|
C3A
|
A:7BU201
|
4.3
|
0.0
|
1.0
|
HA
|
A:ASP66
|
4.3
|
0.0
|
1.0
|
CD2
|
A:HIS46
|
4.5
|
0.0
|
1.0
|
HB3
|
A:ARG47
|
4.5
|
0.0
|
1.0
|
H
|
A:ARG47
|
4.5
|
0.0
|
1.0
|
O
|
A:ILE43
|
4.5
|
0.0
|
1.0
|
C
|
A:GLY65
|
4.5
|
0.0
|
1.0
|
N
|
A:ARG47
|
4.6
|
0.0
|
1.0
|
HG23
|
A:ILE43
|
4.6
|
0.0
|
1.0
|
CB
|
A:VAL69
|
4.7
|
0.0
|
1.0
|
HD3
|
A:ARG47
|
4.7
|
0.0
|
1.0
|
HA3
|
A:GLY65
|
4.7
|
0.0
|
1.0
|
C4B
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
NA1
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
HG2
|
A:ARG47
|
4.8
|
0.0
|
1.0
|
H3B1
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
HG11
|
A:VAL69
|
4.9
|
0.0
|
1.0
|
HA
|
A:ILE43
|
4.9
|
0.0
|
1.0
|
HB3
|
A:HIS46
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 3 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F21C
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FC
|
A:7BU201
|
1.3
|
0.0
|
1.0
|
F22C
|
A:7BU201
|
2.1
|
0.0
|
1.0
|
F23C
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
H3B1
|
A:7BU201
|
2.3
|
0.0
|
1.0
|
HD12
|
A:ILE101
|
2.4
|
0.0
|
1.0
|
CHC
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
C3B
|
A:7BU201
|
2.8
|
0.0
|
1.0
|
HA
|
A:LEU98
|
2.8
|
0.0
|
1.0
|
C4B
|
A:7BU201
|
2.9
|
0.0
|
1.0
|
CG
|
A:TRP68
|
3.1
|
0.0
|
1.0
|
CD2
|
A:TRP68
|
3.2
|
0.0
|
1.0
|
CD1
|
A:ILE101
|
3.3
|
0.0
|
1.0
|
HD11
|
A:ILE101
|
3.3
|
0.0
|
1.0
|
CD1
|
A:TRP68
|
3.4
|
0.0
|
1.0
|
CE2
|
A:TRP68
|
3.5
|
0.0
|
1.0
|
HB3
|
A:TRP68
|
3.5
|
0.0
|
1.0
|
HB2
|
A:LEU98
|
3.6
|
0.0
|
1.0
|
HG
|
A:LEU98
|
3.6
|
0.0
|
1.0
|
NE1
|
A:TRP68
|
3.6
|
0.0
|
1.0
|
HB2
|
A:TRP68
|
3.6
|
0.0
|
1.0
|
C1C
|
A:7BU201
|
3.7
|
0.0
|
1.0
|
HD13
|
A:LEU98
|
3.7
|
0.0
|
1.0
|
CB
|
A:TRP68
|
3.7
|
0.0
|
1.0
|
CE3
|
A:TRP68
|
3.8
|
0.0
|
1.0
|
CA
|
A:LEU98
|
3.8
|
0.0
|
1.0
|
HB
|
A:ILE101
|
3.8
|
0.0
|
1.0
|
HD13
|
A:ILE101
|
3.9
|
0.0
|
1.0
|
HD1
|
A:TRP68
|
3.9
|
0.0
|
1.0
|
H2C1
|
A:7BU201
|
4.0
|
0.0
|
1.0
|
CB
|
A:LEU98
|
4.0
|
0.0
|
1.0
|
HE3
|
A:TRP68
|
4.1
|
0.0
|
1.0
|
HG22
|
A:ILE101
|
4.1
|
0.0
|
1.0
|
C2B
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
CG
|
A:LEU98
|
4.2
|
0.0
|
1.0
|
NB2
|
A:7BU201
|
4.2
|
0.0
|
1.0
|
C2C
|
A:7BU201
|
4.2
|
0.0
|
1.0
|
HE1
|
A:TRP68
|
4.2
|
0.0
|
1.0
|
CZ2
|
A:TRP68
|
4.3
|
0.0
|
1.0
|
HA2
|
A:GLY65
|
4.3
|
0.0
|
1.0
|
CG1
|
A:ILE101
|
4.4
|
0.0
|
1.0
|
N
|
A:LEU98
|
4.4
|
0.0
|
1.0
|
CD1
|
A:LEU98
|
4.4
|
0.0
|
1.0
|
CZ3
|
A:TRP68
|
4.5
|
0.0
|
1.0
|
CB
|
A:ILE101
|
4.5
|
0.0
|
1.0
|
HD13
|
A:LEU13
|
4.5
|
0.0
|
1.0
|
CH2
|
A:TRP68
|
4.7
|
0.0
|
1.0
|
HG13
|
A:ILE101
|
4.7
|
0.0
|
1.0
|
HD11
|
A:LEU13
|
4.7
|
0.0
|
1.0
|
H2B1
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
CG2
|
A:ILE101
|
4.8
|
0.0
|
1.0
|
C1B
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
NC3
|
A:7BU201
|
4.9
|
0.0
|
1.0
|
O
|
A:ALA97
|
4.9
|
0.0
|
1.0
|
C
|
A:LEU98
|
4.9
|
0.0
|
1.0
|
H
|
A:LEU98
|
4.9
|
0.0
|
1.0
|
C
|
A:ALA97
|
4.9
|
0.0
|
1.0
|
O
|
A:LEU98
|
4.9
|
0.0
|
1.0
|
HZ2
|
A:TRP68
|
4.9
|
0.0
|
1.0
|
HD11
|
A:LEU98
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 4 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F21D
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FD
|
A:7BU201
|
1.4
|
0.0
|
1.0
|
F22D
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
F23D
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
HA
|
A:ARG7
|
2.3
|
0.0
|
1.0
|
CHD
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
H3C1
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HA3
|
A:GLY10
|
2.4
|
0.0
|
1.0
|
C4C
|
A:7BU201
|
2.9
|
0.0
|
1.0
|
C3C
|
A:7BU201
|
2.9
|
0.0
|
1.0
|
O
|
A:LEU6
|
3.3
|
0.0
|
1.0
|
CA
|
A:ARG7
|
3.4
|
0.0
|
1.0
|
CA
|
A:GLY10
|
3.5
|
0.0
|
1.0
|
C1D
|
A:7BU201
|
3.6
|
0.0
|
1.0
|
HG2
|
A:ARG7
|
3.6
|
0.0
|
1.0
|
O
|
A:ARG7
|
3.6
|
0.0
|
1.0
|
HE1
|
A:HIS46
|
3.7
|
0.0
|
1.0
|
H
|
A:ASP11
|
3.8
|
0.0
|
1.0
|
H
|
A:GLY10
|
3.8
|
0.0
|
1.0
|
C
|
A:ARG7
|
4.0
|
0.0
|
1.0
|
C
|
A:LEU6
|
4.0
|
0.0
|
1.0
|
C
|
A:GLY10
|
4.0
|
0.0
|
1.0
|
N
|
A:ARG7
|
4.0
|
0.0
|
1.0
|
H2D1
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
N
|
A:GLY10
|
4.1
|
0.0
|
1.0
|
N
|
A:ASP11
|
4.1
|
0.0
|
1.0
|
C2C
|
A:7BU201
|
4.2
|
0.0
|
1.0
|
HA2
|
A:GLY10
|
4.2
|
0.0
|
1.0
|
NC3
|
A:7BU201
|
4.2
|
0.0
|
1.0
|
HG2
|
A:ARG102
|
4.2
|
0.0
|
1.0
|
CB
|
A:ARG7
|
4.3
|
0.0
|
1.0
|
C2D
|
A:7BU201
|
4.3
|
0.0
|
1.0
|
HB3
|
A:ARG7
|
4.3
|
0.0
|
1.0
|
CG
|
A:ARG7
|
4.4
|
0.0
|
1.0
|
CE1
|
A:HIS46
|
4.5
|
0.0
|
1.0
|
HG3
|
A:ARG7
|
4.6
|
0.0
|
1.0
|
HB1
|
A:ALA105
|
4.7
|
0.0
|
1.0
|
HB2
|
A:ALA105
|
4.7
|
0.0
|
1.0
|
HH12
|
A:ARG102
|
4.7
|
0.0
|
1.0
|
HH11
|
A:ARG102
|
4.8
|
0.0
|
1.0
|
NH1
|
A:ARG102
|
4.8
|
0.0
|
1.0
|
HB3
|
A:LEU6
|
4.8
|
0.0
|
1.0
|
ND4
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
O
|
A:GLY10
|
4.8
|
0.0
|
1.0
|
C1C
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
HA
|
A:ARG102
|
4.8
|
0.0
|
1.0
|
H2C1
|
A:7BU201
|
4.9
|
0.0
|
1.0
|
H
|
A:ARG7
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 5 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F22A
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FA
|
A:7BU201
|
1.4
|
0.0
|
1.0
|
F21A
|
A:7BU201
|
2.1
|
0.0
|
1.0
|
F23A
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
H2A1
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
CHA
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HB2
|
A:ALA56
|
2.6
|
0.0
|
1.0
|
C2A
|
A:7BU201
|
2.7
|
0.0
|
1.0
|
C1A
|
A:7BU201
|
2.8
|
0.0
|
1.0
|
HB2
|
A:ALA62
|
2.9
|
0.0
|
1.0
|
HB1
|
A:ALA56
|
2.9
|
0.0
|
1.0
|
HA
|
A:ALA62
|
3.2
|
0.0
|
1.0
|
CB
|
A:ALA56
|
3.2
|
0.0
|
1.0
|
HA
|
A:ALA56
|
3.5
|
0.0
|
1.0
|
HB2
|
A:ALA61
|
3.5
|
0.0
|
1.0
|
N
|
A:ALA62
|
3.6
|
0.0
|
1.0
|
H
|
A:ALA57
|
3.6
|
0.0
|
1.0
|
C4D
|
A:7BU201
|
3.6
|
0.0
|
1.0
|
H
|
A:ALA62
|
3.7
|
0.0
|
1.0
|
CA
|
A:ALA62
|
3.7
|
0.0
|
1.0
|
CB
|
A:ALA62
|
3.7
|
0.0
|
1.0
|
CA
|
A:ALA56
|
3.9
|
0.0
|
1.0
|
C3A
|
A:7BU201
|
4.0
|
0.0
|
1.0
|
HB1
|
A:ALA61
|
4.0
|
0.0
|
1.0
|
NA1
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
H3D1
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
HB3
|
A:ALA56
|
4.1
|
0.0
|
1.0
|
C
|
A:ALA61
|
4.1
|
0.0
|
1.0
|
HB3
|
A:ALA62
|
4.2
|
0.0
|
1.0
|
O
|
A:ASP58
|
4.2
|
0.0
|
1.0
|
CB
|
A:ALA61
|
4.2
|
0.0
|
1.0
|
CE1
|
A:PHE50
|
4.2
|
0.0
|
1.0
|
HE1
|
A:PHE50
|
4.2
|
0.0
|
1.0
|
C3D
|
A:7BU201
|
4.3
|
0.0
|
1.0
|
CD1
|
A:PHE50
|
4.4
|
0.0
|
1.0
|
H
|
A:ASP58
|
4.4
|
0.0
|
1.0
|
HD1
|
A:PHE50
|
4.5
|
0.0
|
1.0
|
N
|
A:ALA57
|
4.5
|
0.0
|
1.0
|
HB1
|
A:ALA62
|
4.5
|
0.0
|
1.0
|
O
|
A:ALA61
|
4.6
|
0.0
|
1.0
|
CZ
|
A:PHE50
|
4.6
|
0.0
|
1.0
|
HD12
|
A:LEU6
|
4.7
|
0.0
|
1.0
|
C4A
|
A:7BU201
|
4.7
|
0.0
|
1.0
|
H3A1
|
A:7BU201
|
4.7
|
0.0
|
1.0
|
ND4
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
C
|
A:ALA56
|
4.8
|
0.0
|
1.0
|
CA
|
A:ALA61
|
4.8
|
0.0
|
1.0
|
CG
|
A:PHE50
|
4.9
|
0.0
|
1.0
|
HZ
|
A:PHE50
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 6 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F22B
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FB
|
A:7BU201
|
1.4
|
0.0
|
1.0
|
F21B
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
F23B
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
CHB
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HA
|
A:ASP66
|
2.8
|
0.0
|
1.0
|
H3A1
|
A:7BU201
|
2.9
|
0.0
|
1.0
|
H2B1
|
A:7BU201
|
3.0
|
0.0
|
1.0
|
C
|
A:GLY65
|
3.0
|
0.0
|
1.0
|
HG21
|
A:VAL69
|
3.0
|
0.0
|
1.0
|
O
|
A:GLY65
|
3.1
|
0.0
|
1.0
|
N
|
A:ASP66
|
3.1
|
0.0
|
1.0
|
HG22
|
A:VAL69
|
3.1
|
0.0
|
1.0
|
C4A
|
A:7BU201
|
3.2
|
0.0
|
1.0
|
HE
|
A:ARG47
|
3.2
|
0.0
|
1.0
|
C1B
|
A:7BU201
|
3.2
|
0.0
|
1.0
|
HA3
|
A:GLY65
|
3.3
|
0.0
|
1.0
|
C3A
|
A:7BU201
|
3.3
|
0.0
|
1.0
|
C2B
|
A:7BU201
|
3.4
|
0.0
|
1.0
|
CA
|
A:ASP66
|
3.5
|
0.0
|
1.0
|
H
|
A:ASP66
|
3.5
|
0.0
|
1.0
|
CG2
|
A:VAL69
|
3.6
|
0.0
|
1.0
|
OD1
|
A:ASP66
|
3.6
|
0.0
|
1.0
|
HG3
|
A:ARG47
|
3.7
|
0.0
|
1.0
|
CA
|
A:GLY65
|
3.7
|
0.0
|
1.0
|
CG
|
A:ASP66
|
3.9
|
0.0
|
1.0
|
HD2
|
A:ARG47
|
4.0
|
0.0
|
1.0
|
NE
|
A:ARG47
|
4.1
|
0.0
|
1.0
|
HG23
|
A:VAL69
|
4.1
|
0.0
|
1.0
|
HA2
|
A:GLY65
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASP66
|
4.2
|
0.0
|
1.0
|
CD
|
A:ARG47
|
4.4
|
0.0
|
1.0
|
HB2
|
A:ARG47
|
4.4
|
0.0
|
1.0
|
CG
|
A:ARG47
|
4.4
|
0.0
|
1.0
|
OD2
|
A:ASP66
|
4.5
|
0.0
|
1.0
|
NA1
|
A:7BU201
|
4.5
|
0.0
|
1.0
|
NB2
|
A:7BU201
|
4.5
|
0.0
|
1.0
|
C2A
|
A:7BU201
|
4.7
|
0.0
|
1.0
|
O
|
A:ALA62
|
4.7
|
0.0
|
1.0
|
C
|
A:ASP66
|
4.7
|
0.0
|
1.0
|
C3B
|
A:7BU201
|
4.7
|
0.0
|
1.0
|
HB
|
A:VAL69
|
4.7
|
0.0
|
1.0
|
HB2
|
A:ASP66
|
4.8
|
0.0
|
1.0
|
HA
|
A:ARG47
|
4.8
|
0.0
|
1.0
|
HH21
|
A:ARG47
|
4.8
|
0.0
|
1.0
|
CB
|
A:VAL69
|
4.8
|
0.0
|
1.0
|
H
|
A:VAL69
|
4.9
|
0.0
|
1.0
|
CB
|
A:ARG47
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY65
|
4.9
|
0.0
|
1.0
|
HD2
|
A:HIS46
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 7 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F22C
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FC
|
A:7BU201
|
1.4
|
0.0
|
1.0
|
F21C
|
A:7BU201
|
2.1
|
0.0
|
1.0
|
F23C
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
H2C1
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
HA
|
A:LEU98
|
2.2
|
0.0
|
1.0
|
HG
|
A:LEU98
|
2.3
|
0.0
|
1.0
|
CHC
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HB
|
A:ILE101
|
2.7
|
0.0
|
1.0
|
C2C
|
A:7BU201
|
2.7
|
0.0
|
1.0
|
C1C
|
A:7BU201
|
2.8
|
0.0
|
1.0
|
HD12
|
A:ILE101
|
3.0
|
0.0
|
1.0
|
CA
|
A:LEU98
|
3.1
|
0.0
|
1.0
|
O
|
A:LEU98
|
3.2
|
0.0
|
1.0
|
CG
|
A:LEU98
|
3.2
|
0.0
|
1.0
|
HG3
|
A:ARG102
|
3.5
|
0.0
|
1.0
|
CB
|
A:LEU98
|
3.5
|
0.0
|
1.0
|
C
|
A:LEU98
|
3.6
|
0.0
|
1.0
|
CB
|
A:ILE101
|
3.6
|
0.0
|
1.0
|
C4B
|
A:7BU201
|
3.6
|
0.0
|
1.0
|
HG22
|
A:ILE101
|
3.7
|
0.0
|
1.0
|
HB2
|
A:LEU98
|
3.7
|
0.0
|
1.0
|
HD13
|
A:LEU98
|
3.7
|
0.0
|
1.0
|
CD1
|
A:ILE101
|
3.8
|
0.0
|
1.0
|
HD11
|
A:ILE101
|
3.9
|
0.0
|
1.0
|
H
|
A:ARG102
|
4.0
|
0.0
|
1.0
|
C3C
|
A:7BU201
|
4.0
|
0.0
|
1.0
|
CD1
|
A:LEU98
|
4.0
|
0.0
|
1.0
|
CG2
|
A:ILE101
|
4.0
|
0.0
|
1.0
|
HG23
|
A:VAL14
|
4.0
|
0.0
|
1.0
|
HG21
|
A:ILE101
|
4.1
|
0.0
|
1.0
|
NC3
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
H3B1
|
A:7BU201
|
4.2
|
0.0
|
1.0
|
CG1
|
A:ILE101
|
4.2
|
0.0
|
1.0
|
HD21
|
A:LEU98
|
4.3
|
0.0
|
1.0
|
N
|
A:LEU98
|
4.3
|
0.0
|
1.0
|
CD2
|
A:LEU98
|
4.3
|
0.0
|
1.0
|
HD11
|
A:LEU98
|
4.3
|
0.0
|
1.0
|
C3B
|
A:7BU201
|
4.3
|
0.0
|
1.0
|
CG
|
A:ARG102
|
4.4
|
0.0
|
1.0
|
HG2
|
A:ARG102
|
4.4
|
0.0
|
1.0
|
HG13
|
A:ILE101
|
4.5
|
0.0
|
1.0
|
O
|
A:ALA97
|
4.5
|
0.0
|
1.0
|
HB3
|
A:LEU98
|
4.5
|
0.0
|
1.0
|
HD23
|
A:LEU98
|
4.6
|
0.0
|
1.0
|
N
|
A:ARG102
|
4.6
|
0.0
|
1.0
|
H
|
A:ILE101
|
4.6
|
0.0
|
1.0
|
C4C
|
A:7BU201
|
4.6
|
0.0
|
1.0
|
H3C1
|
A:7BU201
|
4.6
|
0.0
|
1.0
|
HD13
|
A:LEU13
|
4.7
|
0.0
|
1.0
|
HD13
|
A:ILE101
|
4.7
|
0.0
|
1.0
|
CA
|
A:ILE101
|
4.8
|
0.0
|
1.0
|
CG2
|
A:VAL14
|
4.8
|
0.0
|
1.0
|
HG22
|
A:VAL14
|
4.8
|
0.0
|
1.0
|
NB2
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
C
|
A:ALA97
|
4.8
|
0.0
|
1.0
|
HG21
|
A:VAL14
|
4.8
|
0.0
|
1.0
|
N
|
A:GLN99
|
4.9
|
0.0
|
1.0
|
HD12
|
A:LEU98
|
4.9
|
0.0
|
1.0
|
H
|
A:LEU98
|
5.0
|
0.0
|
1.0
|
C
|
A:ILE101
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 8 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F22D
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FD
|
A:7BU201
|
1.3
|
0.0
|
1.0
|
H2D1
|
A:7BU201
|
2.1
|
0.0
|
1.0
|
F21D
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
F23D
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
HA
|
A:ARG7
|
2.2
|
0.0
|
1.0
|
CHD
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HG2
|
A:ARG7
|
2.4
|
0.0
|
1.0
|
C2D
|
A:7BU201
|
2.7
|
0.0
|
1.0
|
C1D
|
A:7BU201
|
2.8
|
0.0
|
1.0
|
HG3
|
A:ARG7
|
2.9
|
0.0
|
1.0
|
CG
|
A:ARG7
|
3.1
|
0.0
|
1.0
|
CA
|
A:ARG7
|
3.1
|
0.0
|
1.0
|
N
|
A:ARG7
|
3.3
|
0.0
|
1.0
|
HB1
|
A:ALA105
|
3.3
|
0.0
|
1.0
|
C
|
A:LEU6
|
3.4
|
0.0
|
1.0
|
O
|
A:LEU6
|
3.4
|
0.0
|
1.0
|
HB3
|
A:LEU6
|
3.6
|
0.0
|
1.0
|
CB
|
A:ARG7
|
3.6
|
0.0
|
1.0
|
HE1
|
A:HIS46
|
3.6
|
0.0
|
1.0
|
C4C
|
A:7BU201
|
3.7
|
0.0
|
1.0
|
H
|
A:ARG7
|
3.8
|
0.0
|
1.0
|
HB2
|
A:LEU6
|
3.8
|
0.0
|
1.0
|
C3D
|
A:7BU201
|
4.0
|
0.0
|
1.0
|
HB2
|
A:ALA105
|
4.1
|
0.0
|
1.0
|
H3C1
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
HB3
|
A:ARG7
|
4.1
|
0.0
|
1.0
|
ND4
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
CB
|
A:ALA105
|
4.1
|
0.0
|
1.0
|
CB
|
A:LEU6
|
4.1
|
0.0
|
1.0
|
HA3
|
A:GLY10
|
4.2
|
0.0
|
1.0
|
C3C
|
A:7BU201
|
4.3
|
0.0
|
1.0
|
HE
|
A:ARG7
|
4.3
|
0.0
|
1.0
|
C
|
A:ARG7
|
4.3
|
0.0
|
1.0
|
CD
|
A:ARG7
|
4.4
|
0.0
|
1.0
|
CA
|
A:LEU6
|
4.4
|
0.0
|
1.0
|
HB2
|
A:ARG7
|
4.5
|
0.0
|
1.0
|
HB3
|
A:ALA105
|
4.5
|
0.0
|
1.0
|
O
|
A:PHE3
|
4.5
|
0.0
|
1.0
|
O
|
A:ARG7
|
4.6
|
0.0
|
1.0
|
H3D1
|
A:7BU201
|
4.6
|
0.0
|
1.0
|
CE1
|
A:HIS46
|
4.7
|
0.0
|
1.0
|
C4D
|
A:7BU201
|
4.7
|
0.0
|
1.0
|
NE
|
A:ARG7
|
4.7
|
0.0
|
1.0
|
NC3
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
HD3
|
A:ARG7
|
4.9
|
0.0
|
1.0
|
H
|
A:GLY10
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 9 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F23A
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FA
|
A:7BU201
|
1.4
|
0.0
|
1.0
|
F21A
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
F22A
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
H
|
A:ALA57
|
2.2
|
0.0
|
1.0
|
H3D1
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
CHA
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HA
|
A:ALA56
|
2.7
|
0.0
|
1.0
|
C3D
|
A:7BU201
|
2.8
|
0.0
|
1.0
|
C4D
|
A:7BU201
|
2.9
|
0.0
|
1.0
|
HB2
|
A:ALA56
|
2.9
|
0.0
|
1.0
|
N
|
A:ALA57
|
3.2
|
0.0
|
1.0
|
CA
|
A:ALA56
|
3.4
|
0.0
|
1.0
|
CB
|
A:ALA56
|
3.5
|
0.0
|
1.0
|
HB2
|
A:ALA61
|
3.6
|
0.0
|
1.0
|
HB3
|
A:ALA57
|
3.7
|
0.0
|
1.0
|
C1A
|
A:7BU201
|
3.7
|
0.0
|
1.0
|
HD12
|
A:LEU6
|
3.7
|
0.0
|
1.0
|
HB1
|
A:ALA56
|
3.7
|
0.0
|
1.0
|
C
|
A:ALA56
|
3.8
|
0.0
|
1.0
|
H
|
A:ASP58
|
3.9
|
0.0
|
1.0
|
HB1
|
A:ALA61
|
4.0
|
0.0
|
1.0
|
H2A1
|
A:7BU201
|
4.0
|
0.0
|
1.0
|
HB1
|
A:ALA57
|
4.0
|
0.0
|
1.0
|
C2D
|
A:7BU201
|
4.1
|
0.0
|
1.0
|
CB
|
A:ALA57
|
4.2
|
0.0
|
1.0
|
ND4
|
A:7BU201
|
4.2
|
0.0
|
1.0
|
CA
|
A:ALA57
|
4.2
|
0.0
|
1.0
|
C2A
|
A:7BU201
|
4.3
|
0.0
|
1.0
|
CB
|
A:ALA61
|
4.3
|
0.0
|
1.0
|
HB3
|
A:ALA56
|
4.5
|
0.0
|
1.0
|
CD1
|
A:LEU6
|
4.5
|
0.0
|
1.0
|
HE2
|
A:PHE3
|
4.6
|
0.0
|
1.0
|
HD13
|
A:LEU6
|
4.6
|
0.0
|
1.0
|
HD2
|
A:PHE3
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP58
|
4.7
|
0.0
|
1.0
|
HD11
|
A:LEU6
|
4.7
|
0.0
|
1.0
|
N
|
A:ALA56
|
4.7
|
0.0
|
1.0
|
O
|
A:ASP58
|
4.7
|
0.0
|
1.0
|
H2D1
|
A:7BU201
|
4.7
|
0.0
|
1.0
|
C1D
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ALA62
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ALA61
|
4.9
|
0.0
|
1.0
|
NA1
|
A:7BU201
|
4.9
|
0.0
|
1.0
|
H
|
A:ALA56
|
4.9
|
0.0
|
1.0
|
HA
|
A:ALA105
|
5.0
|
0.0
|
1.0
|
C
|
A:ALA57
|
5.0
|
0.0
|
1.0
|
O
|
A:ALA56
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 5tgy
Go back to
Fluorine Binding Sites List in 5tgy
Fluorine binding site 10 out
of 12 in the uc(Nmr) Structure of Holo-PS1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of uc(Nmr) Structure of Holo-PS1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:0.0
occ:1.00
|
F23B
|
A:7BU201
|
0.0
|
0.0
|
1.0
|
C1FB
|
A:7BU201
|
1.3
|
0.0
|
1.0
|
F22B
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
F21B
|
A:7BU201
|
2.2
|
0.0
|
1.0
|
HG3
|
A:ARG47
|
2.2
|
0.0
|
1.0
|
H3A1
|
A:7BU201
|
2.3
|
0.0
|
1.0
|
CHB
|
A:7BU201
|
2.4
|
0.0
|
1.0
|
HA
|
A:ARG47
|
2.7
|
0.0
|
1.0
|
C3A
|
A:7BU201
|
2.7
|
0.0
|
1.0
|
C4A
|
A:7BU201
|
2.7
|
0.0
|
1.0
|
CG
|
A:ARG47
|
3.1
|
0.0
|
1.0
|
HB2
|
A:ARG47
|
3.1
|
0.0
|
1.0
|
CB
|
A:ARG47
|
3.3
|
0.0
|
1.0
|
HE
|
A:ARG47
|
3.4
|
0.0
|
1.0
|
CA
|
A:ARG47
|
3.5
|
0.0
|
1.0
|
HD2
|
A:ARG47
|
3.6
|
0.0
|
1.0
|
C1B
|
A:7BU201
|
3.6
|
0.0
|
1.0
|
CD
|
A:ARG47
|
3.7
|
0.0
|
1.0
|
HD2
|
A:PHE50
|
3.8
|
0.0
|
1.0
|
HB3
|
A:PHE50
|
3.8
|
0.0
|
1.0
|
HG2
|
A:ARG47
|
3.9
|
0.0
|
1.0
|
NE
|
A:ARG47
|
4.0
|
0.0
|
1.0
|
C2A
|
A:7BU201
|
4.0
|
0.0
|
1.0
|
HD2
|
A:HIS46
|
4.0
|
0.0
|
1.0
|
NA1
|
A:7BU201
|
4.0
|
0.0
|
1.0
|
H2B1
|
A:7BU201
|
4.2
|
0.0
|
1.0
|
HG21
|
A:VAL69
|
4.2
|
0.0
|
1.0
|
N
|
A:ARG47
|
4.3
|
0.0
|
1.0
|
C2B
|
A:7BU201
|
4.3
|
0.0
|
1.0
|
HB3
|
A:ARG47
|
4.4
|
0.0
|
1.0
|
CD2
|
A:PHE50
|
4.5
|
0.0
|
1.0
|
C
|
A:ARG47
|
4.5
|
0.0
|
1.0
|
HB2
|
A:PHE50
|
4.6
|
0.0
|
1.0
|
O
|
A:ARG47
|
4.6
|
0.0
|
1.0
|
CB
|
A:PHE50
|
4.6
|
0.0
|
1.0
|
C1A
|
A:7BU201
|
4.6
|
0.0
|
1.0
|
H2A1
|
A:7BU201
|
4.7
|
0.0
|
1.0
|
OD1
|
A:ASP66
|
4.7
|
0.0
|
1.0
|
H
|
A:ARG47
|
4.7
|
0.0
|
1.0
|
HA3
|
A:GLY65
|
4.7
|
0.0
|
1.0
|
CD2
|
A:HIS46
|
4.7
|
0.0
|
1.0
|
HD3
|
A:ARG47
|
4.8
|
0.0
|
1.0
|
NB2
|
A:7BU201
|
4.8
|
0.0
|
1.0
|
HA
|
A:ASP66
|
4.8
|
0.0
|
1.0
|
HG22
|
A:VAL69
|
4.9
|
0.0
|
1.0
|
CG
|
A:PHE50
|
4.9
|
0.0
|
1.0
|
CG2
|
A:VAL69
|
5.0
|
0.0
|
1.0
|
|
Reference:
N.F.Polizzi,
Y.Wu,
T.Lemmin,
A.M.Maxwell,
S.Q.Zhang,
J.Rawson,
D.N.Beratan,
M.J.Therien,
W.F.Degrado.
De Novo Design of A Hyperstable Non-Natural Protein-Ligand Complex with Sub- Angstrom Accuracy. Nat Chem V. 9 1157 2017.
ISSN: ESSN 1755-4349
PubMed: 29168496
DOI: 10.1038/NCHEM.2846
Page generated: Thu Aug 1 15:12:33 2024
|