Fluorine in PDB 5u8f: Polycomb Protein Eed in Complex with Inhibitor: (3R,4S)-1-[(1S)-7- Fluoro-2,3-Dihydro-1H-Inden-1-Yl]-N,N-Dimethyl-4-(1-Methyl-1H-Indol- 3-Yl)Pyrrolidin-3-Amine

The structure of Polycomb Protein Eed in Complex with Inhibitor: (3R,4S)-1-[(1S)-7- Fluoro-2,3-Dihydro-1H-Inden-1-Yl]-N,N-Dimethyl-4-(1-Methyl-1H-Indol- 3-Yl)Pyrrolidin-3-Amine, PDB code: 5u8f was solved by C.G.Jakob, H.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.32 / 1.34
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.645, 85.108, 91.514, 90.00, 90.00, 90.00
R / Rfree (%)	15.3 / 17.6

The binding sites of Fluorine atom in the Polycomb Protein Eed in Complex with Inhibitor: (3R,4S)-1-[(1S)-7- Fluoro-2,3-Dihydro-1H-Inden-1-Yl]-N,N-Dimethyl-4-(1-Methyl-1H-Indol- 3-Yl)Pyrrolidin-3-Amine (pdb code 5u8f). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Polycomb Protein Eed in Complex with Inhibitor: (3R,4S)-1-[(1S)-7- Fluoro-2,3-Dihydro-1H-Inden-1-Yl]-N,N-Dimethyl-4-(1-Methyl-1H-Indol- 3-Yl)Pyrrolidin-3-Amine, PDB code: 5u8f:

Fluorine binding site 1 out of 1 in the Polycomb Protein Eed in Complex with Inhibitor: (3R,4S)-1-[(1S)-7- Fluoro-2,3-Dihydro-1H-Inden-1-Yl]-N,N-Dimethyl-4-(1-Methyl-1H-Indol- 3-Yl)Pyrrolidin-3-Amine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Polycomb Protein Eed in Complex with Inhibitor: (3R,4S)-1-[(1S)-7- Fluoro-2,3-Dihydro-1H-Inden-1-Yl]-N,N-Dimethyl-4-(1-Methyl-1H-Indol- 3-Yl)Pyrrolidin-3-Amine within 5.0Å range: probe atom residue distance (Å) B Occ A:F501 b:15.0 occ:1.00 F28 A:82G501 0.0 15.0 1.0 C14 A:82G501 1.3 12.2 1.0 C7 A:82G501 2.4 11.8 1.0 C12 A:82G501 2.4 11.9 1.0 C20 A:82G501 3.0 12.1 1.0 C18 A:82G501 3.1 13.2 1.0 CD2 A:LEU240 3.3 12.2 1.0 CB A:ASN194 3.4 10.7 1.0 O A:LEU240 3.5 11.7 1.0 NH2 A:ARG367 3.5 17.2 1.0 N26 A:82G501 3.6 12.3 1.0 C3 A:82G501 3.6 11.8 1.0 C10 A:82G501 3.6 11.9 1.0 CG A:ASN194 3.7 11.1 1.0 CB A:LEU240 3.8 11.1 1.0 CA A:LEU240 3.8 10.3 1.0 OD1 A:ASN194 4.1 12.6 1.0 CG A:LEU240 4.1 11.1 1.0 C5 A:82G501 4.1 11.5 1.0 C A:LEU240 4.1 10.4 1.0 O A:ASN194 4.3 11.7 1.0 ND2 A:ASN194 4.3 12.0 1.0 CZ A:ARG367 4.4 15.8 1.0 C16 A:82G501 4.4 12.6 1.0 CD1 A:TYR365 4.4 13.9 1.0 CA A:ASN194 4.4 10.3 1.0 C21 A:82G501 4.6 14.2 1.0 C A:ASN194 4.7 10.5 1.0 C23 A:82G501 4.7 16.0 1.0 NH1 A:ARG367 4.7 17.4 1.0 C15 A:82G501 4.8 12.3 1.0 C17 A:82G501 4.8 13.1 1.0 CD1 A:LEU240 4.8 12.0 1.0 CE1 A:TYR365 5.0 14.8 1.0

M.L.Curtin, M.A.Pliushchev, H.Q.Li, M.Torrent, J.D.Dietrich, C.G.Jakob, H.Zhu, H.Zhao, Y.Wang, Z.Ji, R.F.Clark, K.A.Sarris, S.Selvaraju, B.Shaw, M.A.Algire, Y.He, P.L.Richardson, R.F.Sweis, C.Sun, G.G.Chiang, M.R.Michaelides. Sar of Amino Pyrrolidines As Potent and Novel Protein-Protein Interaction Inhibitors of the PRC2 Complex Through Eed Binding. Bioorg. Med. Chem. Lett. V. 27 1576 2017.
ISSN: ESSN 1464-3405
PubMed: 28254486
DOI: 10.1016/J.BMCL.2017.02.030