Fluorine in PDB 5uie: VPS4-VTA1 Complex

The structure of VPS4-VTA1 Complex also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Fluorine atom in the VPS4-VTA1 Complex (pdb code 5uie). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the VPS4-VTA1 Complex, PDB code: 5uie:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Fluorine binding site 1 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:0.1 occ:1.00 F1 A:BEF502 0.0 0.1 1.0 BE A:BEF502 1.5 0.1 1.0 MG A:MG503 2.0 0.1 1.0 F3 A:BEF502 2.5 0.1 1.0 O3B A:ADP501 2.5 0.1 1.0 O1B A:ADP501 2.6 0.1 1.0 F2 A:BEF502 2.6 0.1 1.0 PB A:ADP501 3.2 0.1 1.0 CB A:LYS179 3.9 93.0 1.0 N A:SER180 3.9 98.6 1.0 O3A A:ADP501 4.0 0.1 1.0 CE A:LYS179 4.0 93.0 1.0 CB A:SER180 4.0 98.6 1.0 OD1 A:ASN277 4.2 96.8 1.0 O2B A:ADP501 4.4 0.1 1.0 CA A:SER180 4.6 98.6 1.0 O1A A:ADP501 4.6 0.1 1.0 CA A:LYS179 4.7 93.0 1.0 NH2 B:ARG288 4.7 90.1 1.0 ND2 A:ASN277 4.7 96.8 1.0 CD A:LYS179 4.7 93.0 1.0 CG A:LYS179 4.7 93.0 1.0 N A:LYS179 4.7 93.0 1.0 C A:LYS179 4.7 93.0 1.0 NZ A:LYS179 4.8 93.0 1.0 PA A:ADP501 4.8 0.1 1.0 CG A:ASN277 4.9 96.8 1.0

Fluorine binding site 2 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:0.1 occ:1.00 F2 A:BEF502 0.0 0.1 1.0 BE A:BEF502 1.5 0.1 1.0 OD1 A:ASN277 2.3 96.8 1.0 O1B A:ADP501 2.5 0.1 1.0 F3 A:BEF502 2.6 0.1 1.0 F1 A:BEF502 2.6 0.1 1.0 CG A:ASN277 3.2 96.8 1.0 CE A:LYS179 3.2 93.0 1.0 CA A:PRO175 3.3 85.8 1.0 ND2 A:ASN277 3.4 96.8 1.0 N A:GLY176 3.4 78.5 1.0 NZ A:LYS179 3.5 93.0 1.0 NH2 B:ARG288 3.6 90.1 1.0 C A:PRO175 3.9 85.8 1.0 O A:PRO174 3.9 92.3 1.0 PB A:ADP501 4.0 0.1 1.0 CB A:PRO175 4.1 85.8 1.0 N A:PRO175 4.2 85.8 1.0 O3B A:ADP501 4.2 0.1 1.0 MG A:MG503 4.3 0.1 1.0 C A:PRO174 4.4 92.3 1.0 CD A:LYS179 4.6 93.0 1.0 CA A:GLY176 4.6 78.5 1.0 CB A:ASN277 4.6 96.8 1.0 CZ B:ARG288 4.7 90.1 1.0 O3A A:ADP501 4.8 0.1 1.0 CG A:PRO175 4.8 85.8 1.0 O2B A:ADP501 4.9 0.1 1.0 CB A:LYS179 4.9 93.0 1.0 O A:THR276 5.0 0.8 1.0 CG A:LYS179 5.0 93.0 1.0

Fluorine binding site 3 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:0.1 occ:1.00 F3 A:BEF502 0.0 0.1 1.0 BE A:BEF502 1.5 0.1 1.0 O1B A:ADP501 2.4 0.1 1.0 F1 A:BEF502 2.5 0.1 1.0 F2 A:BEF502 2.6 0.1 1.0 O3B A:ADP501 2.8 0.1 1.0 NH2 B:ARG288 2.9 90.1 1.0 PB A:ADP501 3.0 0.1 1.0 NH2 B:ARG289 3.1 95.4 1.0 MG A:MG503 3.2 0.1 1.0 O2B A:ADP501 3.5 0.1 1.0 NH1 B:ARG289 3.6 95.4 1.0 ND2 A:ASN277 3.6 96.8 1.0 CZ B:ARG289 3.8 95.4 1.0 OD1 A:ASN277 4.1 96.8 1.0 CZ B:ARG288 4.1 90.1 1.0 CG A:ASN277 4.3 96.8 1.0 O3A A:ADP501 4.5 0.1 1.0 N A:GLY176 4.6 78.5 1.0 NH1 B:ARG288 4.7 90.1 1.0 OE2 A:GLU233 4.8 0.0 1.0 CA A:PRO175 4.9 85.8 1.0 CB A:PRO175 5.0 85.8 1.0

Fluorine binding site 4 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F501 b:0.6 occ:1.00 F1 C:BEF501 0.0 0.6 1.0 BE C:BEF501 1.5 0.6 1.0 MG B:MG502 2.0 0.6 1.0 F3 C:BEF501 2.5 0.6 1.0 F2 C:BEF501 2.6 0.6 1.0 O1B B:ADP501 2.6 0.6 1.0 O3B B:ADP501 2.9 0.6 1.0 PB B:ADP501 3.0 0.6 1.0 O2B B:ADP501 3.2 0.6 1.0 OD1 B:ASN277 3.9 79.7 1.0 ND2 B:ASN277 4.2 79.7 1.0 CE B:LYS179 4.3 83.3 1.0 NH2 C:ARG288 4.3 76.2 1.0 CG B:ASN277 4.4 79.7 1.0 OD1 B:ASP232 4.5 97.4 1.0 O3A B:ADP501 4.6 0.6 1.0 CB B:LYS179 4.7 83.3 1.0 OE2 B:GLU233 4.7 0.4 1.0 CB B:SER180 4.7 88.7 1.0 NZ B:LYS179 4.8 83.3 1.0 NH2 C:ARG289 4.8 80.3 1.0 N B:SER180 4.9 88.7 1.0 OD2 B:ASP232 5.0 97.4 1.0

Fluorine binding site 5 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F501 b:0.6 occ:1.00 F2 C:BEF501 0.0 0.6 1.0 BE C:BEF501 1.5 0.6 1.0 OD1 B:ASN277 2.5 79.7 1.0 O1B B:ADP501 2.5 0.6 1.0 F1 C:BEF501 2.6 0.6 1.0 F3 C:BEF501 2.6 0.6 1.0 ND2 B:ASN277 3.0 79.7 1.0 CG B:ASN277 3.1 79.7 1.0 NH2 C:ARG288 3.1 76.2 1.0 CA B:PRO175 3.3 82.2 1.0 CB B:PRO175 3.6 82.2 1.0 N B:GLY176 3.8 85.7 1.0 PB B:ADP501 4.0 0.6 1.0 C B:PRO175 4.1 82.2 1.0 CZ C:ARG288 4.2 76.2 1.0 CE B:LYS179 4.2 83.3 1.0 NZ B:LYS179 4.3 83.3 1.0 CG B:PRO175 4.3 82.2 1.0 N B:PRO175 4.3 82.2 1.0 O3B B:ADP501 4.4 0.6 1.0 MG B:MG502 4.5 0.6 1.0 O2B B:ADP501 4.5 0.6 1.0 CB B:ASN277 4.5 79.7 1.0 NE C:ARG288 4.6 76.2 1.0 O B:PRO174 4.6 79.0 1.0 C B:PRO174 4.8 79.0 1.0 O3A B:ADP501 5.0 0.6 1.0

Fluorine binding site 6 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F501 b:0.6 occ:1.00 F3 C:BEF501 0.0 0.6 1.0 BE C:BEF501 1.5 0.6 1.0 NH2 C:ARG288 2.3 76.2 1.0 O1B B:ADP501 2.4 0.6 1.0 F1 C:BEF501 2.5 0.6 1.0 F2 C:BEF501 2.6 0.6 1.0 O2B B:ADP501 2.7 0.6 1.0 NH2 C:ARG289 2.9 80.3 1.0 PB B:ADP501 3.0 0.6 1.0 NH1 C:ARG289 3.1 80.3 1.0 MG B:MG502 3.3 0.6 1.0 CZ C:ARG289 3.4 80.3 1.0 CZ C:ARG288 3.6 76.2 1.0 O3B B:ADP501 4.0 0.6 1.0 O3A B:ADP501 4.1 0.6 1.0 NH1 C:ARG288 4.2 76.2 1.0 ND2 B:ASN277 4.5 79.7 1.0 NE C:ARG288 4.6 76.2 1.0 NE C:ARG289 4.7 80.3 1.0 OE2 B:GLU233 4.9 0.4 1.0 OD1 B:ASN277 4.9 79.7 1.0 N B:GLY176 5.0 85.7 1.0

Fluorine binding site 7 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F503 b:0.6 occ:1.00 F1 C:BEF503 0.0 0.6 1.0 BE C:BEF503 1.5 0.6 1.0 MG C:MG504 2.0 0.6 1.0 O2B C:ADP502 2.5 0.6 1.0 F3 C:BEF503 2.5 0.6 1.0 F2 C:BEF503 2.6 0.6 1.0 O3B C:ADP502 2.6 0.6 1.0 PB C:ADP502 3.2 0.6 1.0 CE C:LYS179 4.2 77.2 1.0 O1B C:ADP502 4.2 0.6 1.0 O3A C:ADP502 4.3 0.6 1.0 OD1 C:ASN277 4.3 75.7 1.0 CB C:LYS179 4.5 77.2 1.0 CB C:SER180 4.5 83.4 1.0 ND2 C:ASN277 4.5 75.7 1.0 OD1 C:ASP232 4.6 81.1 1.0 N C:SER180 4.6 83.4 1.0 NH2 D:ARG289 4.7 82.4 1.0 NZ C:LYS179 4.8 77.2 1.0 CG C:ASN277 4.8 75.7 1.0 NH2 D:ARG288 4.8 80.9 1.0

Fluorine binding site 8 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F503 b:0.6 occ:1.00 F2 C:BEF503 0.0 0.6 1.0 BE C:BEF503 1.5 0.6 1.0 OD1 C:ASN277 2.3 75.7 1.0 O3B C:ADP502 2.5 0.6 1.0 F1 C:BEF503 2.6 0.6 1.0 F3 C:BEF503 2.6 0.6 1.0 CG C:ASN277 3.1 75.7 1.0 CE C:LYS179 3.2 77.2 1.0 ND2 C:ASN277 3.3 75.7 1.0 CA C:PRO175 3.3 77.1 1.0 NZ C:LYS179 3.3 77.2 1.0 N C:GLY176 3.7 79.8 1.0 O C:PRO174 4.0 79.0 1.0 CB C:PRO175 4.0 77.1 1.0 PB C:ADP502 4.0 0.6 1.0 NH2 D:ARG288 4.0 80.9 1.0 C C:PRO175 4.0 77.1 1.0 N C:PRO175 4.1 77.1 1.0 O2B C:ADP502 4.3 0.6 1.0 MG C:MG504 4.3 0.6 1.0 C C:PRO174 4.4 79.0 1.0 CB C:ASN277 4.6 75.7 1.0 CG C:PRO175 4.6 77.1 1.0 CD C:LYS179 4.6 77.2 1.0 O1B C:ADP502 4.8 0.6 1.0 O C:THR276 4.9 76.4 1.0 O C:GLY173 4.9 78.8 1.0 CA C:GLY176 4.9 79.8 1.0 O3A C:ADP502 4.9 0.6 1.0

Fluorine binding site 9 out of 9 in the VPS4-VTA1 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of VPS4-VTA1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F503 b:0.6 occ:1.00 F3 C:BEF503 0.0 0.6 1.0 BE C:BEF503 1.5 0.6 1.0 O3B C:ADP502 2.4 0.6 1.0 F1 C:BEF503 2.5 0.6 1.0 F2 C:BEF503 2.6 0.6 1.0 NH2 D:ARG288 2.7 80.9 1.0 PB C:ADP502 3.0 0.6 1.0 NH2 D:ARG289 3.0 82.4 1.0 O2B C:ADP502 3.1 0.6 1.0 O1B C:ADP502 3.1 0.6 1.0 MG C:MG504 3.3 0.6 1.0 NH1 D:ARG289 3.4 82.4 1.0 CZ D:ARG289 3.6 82.4 1.0 ND2 C:ASN277 4.0 75.7 1.0 CZ D:ARG288 4.0 80.9 1.0 N C:GLY176 4.3 79.8 1.0 CB C:PRO175 4.4 77.1 1.0 CA C:PRO175 4.4 77.1 1.0 OD1 C:ASN277 4.4 75.7 1.0 O3A C:ADP502 4.5 0.6 1.0 CG C:ASN277 4.6 75.7 1.0 NH1 D:ARG288 4.7 80.9 1.0 C C:PRO175 4.8 77.1 1.0 OE2 C:GLU233 4.9 90.2 1.0 NE D:ARG288 4.9 80.9 1.0 NE D:ARG289 5.0 82.4 1.0

N.Monroe, H.Han, P.S.Shen, W.I.Sundquist, C.P.Hill. Structural Basis of Protein Translocation By the VPS4-VTA1 Aaa Atpase. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28379137
DOI: 10.7554/ELIFE.24487