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Fluorine in PDB 5uze: Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182

Enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182

All present enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182:
1.1.1.205;

Protein crystallography data

The structure of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182, PDB code: 5uze was solved by N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.39 / 2.27
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 64.777, 77.662, 80.321, 110.03, 103.99, 105.46
R / Rfree (%) 19.4 / 25.5

Other elements in 5uze:

The structure of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 also contains other interesting chemical elements:

Potassium (K) 2 atoms
Chlorine (Cl) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 (pdb code 5uze). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182, PDB code: 5uze:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 5uze

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Fluorine binding site 1 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:73.7
occ:1.00
 F1 A:8L1501 0.0 73.7 1.0
C29 A:8L1501 1.3 75.3 1.0
F2 A:8L1501 2.2 72.8 1.0
F3 A:8L1501 2.2 74.3 1.0
C27 A:8L1501 2.3 75.5 1.0
N5 A:8L1501 3.0 68.6 1.0
CG2 A:VAL224 3.0 48.2 1.0
C26 A:8L1501 3.2 75.5 1.0
O A:HOH628 3.4 47.2 1.0
CB A:THR247 3.8 68.5 1.0
C24 A:8L1501 4.2 63.8 1.0
CG2 A:THR247 4.2 72.8 1.0
OG1 A:THR247 4.2 75.9 1.0
CB A:VAL224 4.4 44.5 1.0
O A:VAL224 4.4 41.8 1.0
S A:8L1501 4.5 72.6 1.0
CG1 A:VAL224 4.8 39.4 1.0
N A:VAL224 4.8 44.5 1.0

Fluorine binding site 2 out of 12 in 5uze

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Fluorine binding site 2 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:72.8
occ:1.00
 F2 A:8L1501 0.0 72.8 1.0
C29 A:8L1501 1.3 75.3 1.0
F3 A:8L1501 2.2 74.3 1.0
F1 A:8L1501 2.2 73.7 1.0
C27 A:8L1501 2.3 75.5 1.0
N5 A:8L1501 2.8 68.6 1.0
C26 A:8L1501 3.5 75.5 1.0
CG2 A:VAL224 4.0 48.2 1.0
C24 A:8L1501 4.1 63.8 1.0
CD1 C:LEU24 4.5 59.2 1.0
O A:VAL224 4.7 41.8 1.0
S A:8L1501 4.7 72.6 1.0

Fluorine binding site 3 out of 12 in 5uze

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Fluorine binding site 3 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:74.3
occ:1.00
 F3 A:8L1501 0.0 74.3 1.0
C29 A:8L1501 1.3 75.3 1.0
F2 A:8L1501 2.2 72.8 1.0
F1 A:8L1501 2.2 73.7 1.0
C27 A:8L1501 2.2 75.5 1.0
C26 A:8L1501 2.5 75.5 1.0
CG2 A:VAL224 2.8 48.2 1.0
N5 A:8L1501 3.5 68.6 1.0
CB A:VAL224 4.1 44.5 1.0
S A:8L1501 4.2 72.6 1.0
C24 A:8L1501 4.4 63.8 1.0
O A:VAL224 4.6 41.8 1.0
CG1 A:VAL224 4.7 39.4 1.0
CD2 C:LEU24 4.8 50.4 1.0
CA A:GLY254 4.9 52.1 1.0

Fluorine binding site 4 out of 12 in 5uze

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Fluorine binding site 4 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F502

b:78.1
occ:1.00
 F1 B:8L1502 0.0 78.1 1.0
C29 B:8L1502 1.3 77.5 1.0
F2 B:8L1502 2.2 79.7 1.0
F3 B:8L1502 2.2 81.2 1.0
C27 B:8L1502 2.3 72.9 1.0
N5 B:8L1502 2.8 69.1 1.0
C26 B:8L1502 3.5 70.4 1.0
C24 B:8L1502 4.1 61.3 1.0
CB B:VAL224 4.2 50.9 1.0
O B:VAL224 4.5 49.5 1.0
S B:8L1502 4.6 67.8 1.0
CG2 B:VAL224 4.8 53.8 1.0
CG1 B:VAL224 4.8 47.2 1.0
CB B:THR247 5.0 61.8 1.0

Fluorine binding site 5 out of 12 in 5uze

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Fluorine binding site 5 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F502

b:79.7
occ:1.00
 F2 B:8L1502 0.0 79.7 1.0
C29 B:8L1502 1.3 77.5 1.0
F1 B:8L1502 2.2 78.1 1.0
F3 B:8L1502 2.2 81.2 1.0
C27 B:8L1502 2.3 72.9 1.0
N5 B:8L1502 3.0 69.1 1.0
C26 B:8L1502 3.3 70.4 1.0
C24 B:8L1502 4.2 61.3 1.0
O B:VAL224 4.6 49.5 1.0
S B:8L1502 4.6 67.8 1.0
CD2 A:LEU24 4.7 52.2 1.0
CG1 B:VAL224 4.7 47.2 1.0
CG A:LEU24 4.8 53.4 1.0
CB B:VAL224 4.8 50.9 1.0

Fluorine binding site 6 out of 12 in 5uze

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Fluorine binding site 6 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F502

b:81.2
occ:1.00
 F3 B:8L1502 0.0 81.2 1.0
C29 B:8L1502 1.3 77.5 1.0
F1 B:8L1502 2.2 78.1 1.0
F2 B:8L1502 2.2 79.7 1.0
C27 B:8L1502 2.3 72.9 1.0
C26 B:8L1502 2.6 70.4 1.0
CB B:VAL224 3.2 50.9 1.0
CG1 B:VAL224 3.3 47.2 1.0
N5 B:8L1502 3.5 69.1 1.0
CG2 B:VAL224 3.8 53.8 1.0
S B:8L1502 4.2 67.8 1.0
O B:VAL224 4.3 49.5 1.0
C24 B:8L1502 4.5 61.3 1.0
CA B:VAL224 4.6 51.6 1.0
C B:VAL224 4.9 49.3 1.0
CA B:GLY254 5.0 45.9 1.0

Fluorine binding site 7 out of 12 in 5uze

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Fluorine binding site 7 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F501

b:94.8
occ:1.00
 F1 C:8L1501 0.0 94.8 1.0
C29 C:8L1501 1.3 94.0 1.0
F2 C:8L1501 2.2 95.3 1.0
F3 C:8L1501 2.2 94.4 1.0
C27 C:8L1501 2.3 91.3 1.0
N5 C:8L1501 2.8 88.6 1.0
C26 C:8L1501 3.4 89.8 1.0
CG2 C:THR247 3.9 65.7 1.0
C24 C:8L1501 4.0 83.5 1.0
CB C:VAL224 4.1 73.2 1.0
CB C:THR247 4.2 74.6 1.0
O C:VAL224 4.5 78.0 1.0
CG2 C:VAL224 4.5 62.9 1.0
S C:8L1501 4.6 87.5 1.0
CG1 C:VAL224 4.9 67.5 1.0
N C:VAL224 5.0 73.1 1.0
CA C:VAL224 5.0 71.8 1.0

Fluorine binding site 8 out of 12 in 5uze

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Fluorine binding site 8 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F501

b:95.3
occ:1.00
 F2 C:8L1501 0.0 95.3 1.0
C29 C:8L1501 1.3 94.0 1.0
F1 C:8L1501 2.2 94.8 1.0
F3 C:8L1501 2.2 94.4 1.0
C27 C:8L1501 2.3 91.3 1.0
N5 C:8L1501 2.9 88.6 1.0
C26 C:8L1501 3.3 89.8 1.0
C24 C:8L1501 4.1 83.5 1.0
CD2 D:LEU24 4.2 67.8 1.0
CB C:VAL224 4.5 73.2 1.0
CG1 C:VAL224 4.5 67.5 1.0
S C:8L1501 4.5 87.5 1.0
O C:VAL224 4.6 78.0 1.0
CG D:LEU24 4.7 68.3 1.0

Fluorine binding site 9 out of 12 in 5uze

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Fluorine binding site 9 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F501

b:94.4
occ:1.00
 F3 C:8L1501 0.0 94.4 1.0
C29 C:8L1501 1.3 94.0 1.0
F1 C:8L1501 2.2 94.8 1.0
F2 C:8L1501 2.2 95.3 1.0
C27 C:8L1501 2.3 91.3 1.0
C26 C:8L1501 2.6 89.8 1.0
CB C:VAL224 3.1 73.2 1.0
CG2 C:VAL224 3.3 62.9 1.0
CG1 C:VAL224 3.5 67.5 1.0
N5 C:8L1501 3.5 88.6 1.0
CG2 C:THR247 3.9 65.7 1.0
S C:8L1501 4.2 87.5 1.0
CB C:THR247 4.5 74.6 1.0
C24 C:8L1501 4.5 83.5 1.0
CA C:VAL224 4.5 71.8 1.0
O C:VAL224 4.6 78.0 1.0
CA C:GLY254 4.7 66.3 1.0
CG2 C:VAL255 4.9 51.9 1.0
N C:VAL224 4.9 73.1 1.0
OG1 C:THR247 5.0 77.7 1.0
OG C:SER252 5.0 60.7 1.0

Fluorine binding site 10 out of 12 in 5uze

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Fluorine binding site 10 out of 12 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F501

b:74.2
occ:1.00
 F1 D:8L1501 0.0 74.2 1.0
C29 D:8L1501 1.3 72.5 1.0
F2 D:8L1501 2.1 76.9 1.0
F3 D:8L1501 2.2 75.2 1.0
C27 D:8L1501 2.3 63.1 1.0
N5 D:8L1501 2.6 50.6 1.0
O D:HOH630 3.5 43.4 1.0
C26 D:8L1501 3.5 64.7 1.0
C24 D:8L1501 3.9 53.3 1.0
CB D:VAL224 4.5 52.1 1.0
CB D:THR247 4.5 62.0 1.0
O D:VAL224 4.6 56.7 1.0
S D:8L1501 4.6 60.9 1.0
CG2 D:THR247 4.7 60.1 1.0
CG1 D:VAL224 4.9 54.6 1.0

Reference:

N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P182 To Be Published.
Page generated: Thu Aug 1 15:53:21 2024

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