Fluorine in PDB 5vqk: X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide

The structure of X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide, PDB code: 5vqk was solved by X.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	64.725, 64.725, 159.322, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 24.6

The binding sites of Fluorine atom in the X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide (pdb code 5vqk). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide, PDB code: 5vqk:

Fluorine binding site 1 out of 1 in the X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with A Inverse Agonist and SRC2 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:F601 b:0.2 occ:1.00 F29 A:9GV601 0.0 0.2 1.0 C28 A:9GV601 1.3 0.9 1.0 C30 A:9GV601 2.4 0.1 1.0 C27 A:9GV601 2.4 0.1 1.0 CD2 A:LEU396 3.3 87.4 1.0 C31 A:9GV601 3.6 0.5 1.0 C26 A:9GV601 3.6 0.1 1.0 CD1 A:ILE397 3.9 89.9 1.0 CD2 A:HIS479 4.0 88.1 1.0 CG A:LEU396 4.1 85.4 1.0 C25 A:9GV601 4.1 0.5 1.0 SG A:CYS393 4.2 91.1 1.0 CD1 A:ILE400 4.4 89.5 1.0 CH2 A:TRP317 4.7 90.0 1.0 CD1 A:LEU391 4.8 79.9 1.0 NE2 A:HIS479 4.8 87.8 1.0

X.Li, X.Li. N/A N/A.