Fluorine in PDB 5ywi: Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc:
1.13.11.27;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc, PDB code: 5ywi was solved by W.C.Yang, J.N.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.78 / 2.58
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.601, 83.568, 64.150, 90.00, 102.22, 90.00
R / Rfree (%) 25.4 / 28.7

Other elements in 5ywi:

The structure of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc (pdb code 5ywi). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc, PDB code: 5ywi:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 5ywi

Go back to Fluorine Binding Sites List in 5ywi
Fluorine binding site 1 out of 3 in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F502

b:92.0
occ:1.00
F2 A:NTD502 0.0 92.0 1.0
C14 A:NTD502 1.4 87.9 1.0
F1 A:NTD502 2.2 86.0 1.0
F3 A:NTD502 2.2 85.6 1.0
C11 A:NTD502 2.4 90.0 1.0
C12 A:NTD502 2.8 90.5 1.0
CB A:ASN423 3.3 89.3 1.0
C A:ASN423 3.5 94.3 1.0
N A:PHE424 3.5 93.5 1.0
C10 A:NTD502 3.6 89.6 1.0
CD1 A:LEU427 3.7 92.5 1.0
O A:ASN423 3.8 98.1 1.0
CD1 A:PHE424 3.8 96.7 1.0
CG A:PHE424 3.9 95.1 1.0
CE1 A:PHE424 3.9 93.1 1.0
CA A:PHE424 3.9 96.4 1.0
CA A:ASN423 3.9 89.8 1.0
CD2 A:PHE424 4.1 90.7 1.0
C13 A:NTD502 4.1 86.3 1.0
CZ A:PHE424 4.1 94.3 1.0
O A:GLY420 4.2 86.7 1.0
CE2 A:PHE424 4.2 93.0 1.0
CB A:PHE424 4.5 97.7 1.0
CG A:ASN423 4.6 93.0 1.0
CG A:LEU427 4.6 97.5 1.0
N A:ASN423 4.7 94.1 1.0
C9 A:NTD502 4.7 88.7 1.0
CD1 A:LEU368 4.8 84.1 1.0
ND2 A:ASN423 4.8 91.3 1.0
C8 A:NTD502 4.9 86.3 1.0

Fluorine binding site 2 out of 3 in 5ywi

Go back to Fluorine Binding Sites List in 5ywi
Fluorine binding site 2 out of 3 in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F502

b:85.6
occ:1.00
F3 A:NTD502 0.0 85.6 1.0
C14 A:NTD502 1.4 87.9 1.0
F2 A:NTD502 2.2 92.0 1.0
F1 A:NTD502 2.2 86.0 1.0
C11 A:NTD502 2.4 90.0 1.0
C10 A:NTD502 3.2 89.6 1.0
C12 A:NTD502 3.2 90.5 1.0
CD1 A:LEU368 3.4 84.1 1.0
CD1 A:LEU427 3.5 92.5 1.0
CE2 A:PHE381 3.7 82.4 1.0
CD2 A:PHE381 4.1 81.9 1.0
C13 A:NTD502 4.4 86.3 1.0
C9 A:NTD502 4.4 88.7 1.0
CZ A:PHE381 4.4 84.5 1.0
CB A:ASN423 4.5 89.3 1.0
CG A:LEU427 4.8 97.5 1.0
CG A:LEU368 4.9 87.5 1.0
C8 A:NTD502 4.9 86.3 1.0
OE1 A:GLN379 5.0 87.7 1.0

Fluorine binding site 3 out of 3 in 5ywi

Go back to Fluorine Binding Sites List in 5ywi
Fluorine binding site 3 out of 3 in the Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F502

b:86.0
occ:1.00
F1 A:NTD502 0.0 86.0 1.0
C14 A:NTD502 1.4 87.9 1.0
F2 A:NTD502 2.2 92.0 1.0
F3 A:NTD502 2.2 85.6 1.0
C11 A:NTD502 2.4 90.0 1.0
C10 A:NTD502 2.7 89.6 1.0
CE1 A:PHE424 3.3 93.1 1.0
CD1 A:PHE424 3.6 96.7 1.0
C12 A:NTD502 3.6 90.5 1.0
CZ A:PHE424 3.9 94.3 1.0
CD1 A:LEU427 4.0 92.5 1.0
C9 A:NTD502 4.1 88.7 1.0
CG A:PHE424 4.4 95.1 1.0
CE2 A:PHE424 4.7 93.0 1.0
C13 A:NTD502 4.7 86.3 1.0
CD2 A:PHE424 4.9 90.7 1.0
C8 A:NTD502 4.9 86.3 1.0
N A:NTD502 5.0 89.9 1.0

Reference:

W.C.Yang, J.N.Chen. Crystal Structure of Arabidopsis Thaliana Hppd Truncated Mutant Complexed with Ntbc To Be Published.
Page generated: Sun Dec 13 12:43:33 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy