Fluorine in PDB 5z3u: Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State

The structure of Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State (pdb code 5z3u). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State, PDB code: 5z3u:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State within 5.0Å range: probe atom residue distance (Å) B Occ O:F1503 b:26.0 occ:1.00 F1 O:BEF1503 0.0 26.0 1.0 BE O:BEF1503 1.7 24.3 1.0 NH1 O:ARG1199 2.3 0.9 1.0 O2A O:ADP1502 2.4 18.4 1.0 F3 O:BEF1503 2.6 22.3 1.0 F2 O:BEF1503 2.8 26.8 1.0 O5' O:ADP1502 2.9 18.4 1.0 PA O:ADP1502 3.0 18.4 1.0 CZ O:ARG1199 3.1 0.9 1.0 O3A O:ADP1502 3.2 18.4 1.0 C5' O:ADP1502 3.5 18.4 1.0 ND2 O:ASN1171 3.6 0.2 1.0 NE O:ARG1199 3.7 0.9 1.0 CD O:ARG1199 3.8 0.9 1.0 C4' O:ADP1502 3.9 18.4 1.0 NH2 O:ARG1199 4.0 0.9 1.0 CG O:ASN1171 4.0 0.1 1.0 CA O:GLY795 4.0 0.3 1.0 O3B O:ADP1502 4.0 18.4 1.0 PB O:ADP1502 4.3 18.4 1.0 OD1 O:ASN1171 4.4 0.8 1.0 CB O:ASN1171 4.5 0.4 1.0 O1A O:ADP1502 4.5 18.4 1.0 N O:GLY795 4.6 0.6 1.0 O4' O:ADP1502 4.6 18.4 1.0 C O:GLY795 4.7 0.4 1.0 O O:GLY795 5.0 0.0 1.0

Fluorine binding site 2 out of 3 in the Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State within 5.0Å range: probe atom residue distance (Å) B Occ O:F1503 b:26.8 occ:1.00 F2 O:BEF1503 0.0 26.8 1.0 BE O:BEF1503 1.7 24.3 1.0 O2A O:ADP1502 2.1 18.4 1.0 O3B O:ADP1502 2.2 18.4 1.0 F3 O:BEF1503 2.7 22.3 1.0 F1 O:BEF1503 2.8 26.0 1.0 PB O:ADP1502 3.0 18.4 1.0 O3A O:ADP1502 3.0 18.4 1.0 CD2 O:LEU1168 3.1 0.2 1.0 PA O:ADP1502 3.1 18.4 1.0 CD1 O:LEU1168 3.3 0.2 1.0 O1B O:ADP1502 3.4 18.4 1.0 CG O:LEU1168 3.5 0.2 1.0 CB O:LEU1168 3.8 0.2 1.0 O1A O:ADP1502 4.1 18.4 1.0 O5' O:ADP1502 4.2 18.4 1.0 NH1 O:ARG1199 4.2 0.9 1.0 O2B O:ADP1502 4.4 18.4 1.0 MG O:MG1501 4.8 47.2 1.0 CA O:LEU1168 4.8 0.7 1.0 O O:LEU1168 4.9 0.7 1.0

Fluorine binding site 3 out of 3 in the Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of SNF2-Nucleosome Complex at SHL2 in Adp Befx State within 5.0Å range: probe atom residue distance (Å) B Occ O:F1503 b:22.3 occ:1.00 F3 O:BEF1503 0.0 22.3 1.0 BE O:BEF1503 1.7 24.3 1.0 NH1 O:ARG1199 2.2 0.9 1.0 F1 O:BEF1503 2.6 26.0 1.0 F2 O:BEF1503 2.7 26.8 1.0 O3B O:ADP1502 2.9 18.4 1.0 N O:GLY795 3.0 0.6 1.0 CD2 O:LEU1168 3.2 0.2 1.0 CZ O:ARG1199 3.2 0.9 1.0 CA O:GLY795 3.3 0.3 1.0 NH2 O:ARG1199 3.5 0.9 1.0 O3A O:ADP1502 3.7 18.4 1.0 PB O:ADP1502 3.9 18.4 1.0 O2A O:ADP1502 4.0 18.4 1.0 C O:MET794 4.2 0.2 1.0 NE O:ARG1199 4.4 0.9 1.0 PA O:ADP1502 4.4 18.4 1.0 C O:GLY795 4.5 0.4 1.0 CB O:MET794 4.5 0.0 1.0 CG O:LEU1168 4.5 0.2 1.0 CA O:MET794 4.6 0.4 1.0 O2B O:ADP1502 4.7 18.4 1.0 NH2 O:ARG1196 4.8 0.7 1.0 O5' O:ADP1502 4.8 18.4 1.0 CD1 O:LEU1168 4.9 0.2 1.0 CD O:ARG1199 4.9 0.9 1.0 N O:LEU796 5.0 0.6 1.0

M.Li, X.Xia, Y.Tian, Q.Jia, X.Liu, Y.Lu, M.Li, X.Li, Z.Chen. Mechanism of Dna Translocation Underlying Chromatin Remodelling By SNF2. Nature V. 567 409 2019.
ISSN: ESSN 1476-4687
PubMed: 30867599
DOI: 10.1038/S41586-019-1029-2