Fluorine in PDB 5z3v: Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State

Other elements in 5z3v:

The structure of Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State (pdb code 5z3v). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State, PDB code: 5z3v:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 5z3v

Go back to Fluorine Binding Sites List in 5z3v
Fluorine binding site 1 out of 3 in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State within 5.0Å range:
probe atom residue distance (Å) B Occ
O:F1502

b:55.0
occ:1.00
F1 O:BEF1502 0.0 55.0 1.0
BE O:BEF1502 1.7 53.2 1.0
O3B O:ADP1501 2.4 47.3 1.0
F3 O:BEF1502 2.6 51.3 1.0
F2 O:BEF1502 2.8 55.7 1.0
MG O:MG1503 3.1 21.3 1.0
PB O:ADP1501 3.6 47.3 1.0
NH2 O:ARG1196 3.7 0.6 1.0
O2A O:ADP1501 3.7 47.3 1.0
O1B O:ADP1501 3.8 47.3 1.0
NH1 O:ARG1196 3.9 0.6 1.0
CZ O:ARG1196 4.0 0.6 1.0
O3A O:ADP1501 4.5 47.3 1.0
NH1 O:ARG1199 4.5 0.2 1.0
O2B O:ADP1501 4.7 47.3 1.0
PA O:ADP1501 4.7 47.3 1.0
NH2 O:ARG1199 4.8 0.2 1.0
NE O:ARG1196 4.9 0.6 1.0
OE2 O:GLU895 5.0 0.9 1.0

Fluorine binding site 2 out of 3 in 5z3v

Go back to Fluorine Binding Sites List in 5z3v
Fluorine binding site 2 out of 3 in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State within 5.0Å range:
probe atom residue distance (Å) B Occ
O:F1502

b:55.7
occ:1.00
F2 O:BEF1502 0.0 55.7 1.0
BE O:BEF1502 1.7 53.2 1.0
NH2 O:ARG1199 2.2 0.2 1.0
NH2 O:ARG1196 2.5 0.6 1.0
F3 O:BEF1502 2.7 51.3 1.0
F1 O:BEF1502 2.8 55.0 1.0
CZ O:ARG1196 2.9 0.6 1.0
CZ O:ARG1199 3.1 0.2 1.0
NE O:ARG1196 3.2 0.6 1.0
NH1 O:ARG1199 3.2 0.2 1.0
CD O:ARG1196 3.3 0.6 1.0
O O:LEU1170 3.7 0.0 1.0
NH1 O:ARG1196 3.8 0.6 1.0
O3B O:ADP1501 4.1 47.3 1.0
NE O:ARG1199 4.3 0.2 1.0
O2A O:ADP1501 4.4 47.3 1.0
CG O:ASN1171 4.5 0.3 1.0
CA O:ASN1171 4.5 0.5 1.0
CG O:ARG1196 4.6 0.6 1.0
OD1 O:ASN1171 4.6 0.9 1.0
CB O:ASN1171 4.7 0.5 1.0
ND2 O:ASN1171 4.7 0.4 1.0
C O:LEU1170 4.8 0.6 1.0
CA O:ARG1196 4.9 0.6 1.0

Fluorine binding site 3 out of 3 in 5z3v

Go back to Fluorine Binding Sites List in 5z3v
Fluorine binding site 3 out of 3 in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State within 5.0Å range:
probe atom residue distance (Å) B Occ
O:F1502

b:51.3
occ:1.00
F3 O:BEF1502 0.0 51.3 1.0
BE O:BEF1502 1.7 53.2 1.0
O3B O:ADP1501 2.2 47.3 1.0
O2A O:ADP1501 2.2 47.3 1.0
NH1 O:ARG1199 2.3 0.2 1.0
F1 O:BEF1502 2.6 55.0 1.0
F2 O:BEF1502 2.7 55.7 1.0
O3A O:ADP1501 3.1 47.3 1.0
PA O:ADP1501 3.1 47.3 1.0
CZ O:ARG1199 3.2 0.2 1.0
PB O:ADP1501 3.2 47.3 1.0
NH2 O:ARG1199 3.4 0.2 1.0
ND2 O:ASN1171 3.4 0.4 1.0
O5' O:ADP1501 3.8 47.3 1.0
CG O:ASN1171 3.9 0.3 1.0
O1B O:ADP1501 3.9 47.3 1.0
N O:GLY795 4.0 0.7 1.0
OD1 O:ASN1171 4.2 0.9 1.0
CA O:GLY795 4.2 0.4 1.0
NE O:ARG1199 4.3 0.2 1.0
O2B O:ADP1501 4.4 47.3 1.0
O1A O:ADP1501 4.5 47.3 1.0
NH2 O:ARG1196 4.8 0.6 1.0
CB O:ASN1171 4.8 0.5 1.0
MG O:MG1503 4.8 21.3 1.0
C5' O:ADP1501 4.8 47.3 1.0
CD O:ARG1199 4.9 0.2 1.0

Reference:

M.Li, X.Xia, Y.Tian, Q.Jia, X.Liu, Y.Lu, M.Li, X.Li, Z.Chen. Mechanism of Dna Translocation Underlying Chromatin Remodelling By SNF2. Nature V. 567 409 2019.
ISSN: ESSN 1476-4687
PubMed: 30867599
DOI: 10.1038/S41586-019-1029-2
Page generated: Sun Dec 13 12:43:40 2020

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