Atomistry » Fluorine » PDB 5yg2-6a01 » 5zkq
Atomistry »
  Fluorine »
    PDB 5yg2-6a01 »
      5zkq »

Fluorine in PDB 5zkq: Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491

Enzymatic activity of Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491

All present enzymatic activity of Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491, PDB code: 5zkq was solved by C.Cao, Q.Zhao, X.C.Zhang, B.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 2.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.220, 166.540, 100.310, 90.00, 100.00, 90.00
R / Rfree (%) 20.3 / 23.5

Other elements in 5zkq:

The structure of Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491 (pdb code 5zkq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491, PDB code: 5zkq:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 5zkq

Go back to Fluorine Binding Sites List in 5zkq
Fluorine binding site 1 out of 2 in the Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:80.6
occ:1.00
FAG A:9EU501 0.0 80.6 1.0
CAY A:9EU501 1.3 81.4 1.0
CBB A:9EU501 2.3 81.4 1.0
CAQ A:9EU501 2.3 83.3 1.0
CAS A:9EU501 2.7 82.1 1.0
CA A:GLY94 3.1 72.3 1.0
CD2 A:PHE174 3.3 72.8 1.0
CB A:PHE174 3.6 71.4 1.0
CAM A:9EU501 3.6 82.2 1.0
CAZ A:9EU501 3.6 86.2 1.0
CG A:PHE174 3.7 71.5 1.0
NBJ A:9EU501 4.0 81.8 1.0
CAL A:9EU501 4.1 84.0 1.0
N A:GLY94 4.1 73.0 1.0
CAO A:9EU501 4.2 79.1 1.0
CD2 A:PHE97 4.2 72.7 1.0
C A:GLY94 4.2 74.5 1.0
CE2 A:PHE174 4.2 75.7 1.0
O A:GLY94 4.3 74.4 1.0
CBE A:9EU501 4.4 80.5 1.0
CZ2 A:TRP73 4.5 79.3 1.0
CE2 A:PHE152 4.7 72.0 1.0
CD1 A:PHE174 4.7 72.8 1.0
CE2 A:PHE97 4.8 75.5 1.0
CAV A:9EU501 4.8 90.2 1.0
CH2 A:TRP73 4.8 79.6 1.0
C A:ALA93 4.9 76.5 1.0
CD2 A:PHE152 4.9 69.3 1.0
CG A:PHE97 5.0 69.1 1.0

Fluorine binding site 2 out of 2 in 5zkq

Go back to Fluorine Binding Sites List in 5zkq
Fluorine binding site 2 out of 2 in the Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Human Platelet-Activating Factor Receptor in Complex with Abt-491 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1201

b:73.4
occ:1.00
FAG B:9EU1201 0.0 73.4 1.0
CAY B:9EU1201 1.3 75.8 1.0
CBB B:9EU1201 2.3 75.4 1.0
CAQ B:9EU1201 2.3 79.8 1.0
CAS B:9EU1201 2.7 72.6 1.0
CA B:GLY94 3.3 65.6 1.0
CD2 B:PHE174 3.5 69.4 1.0
CAM B:9EU1201 3.6 78.8 1.0
CB B:PHE174 3.6 69.0 1.0
CAZ B:9EU1201 3.6 84.2 1.0
CG B:PHE174 3.8 68.9 1.0
NBJ B:9EU1201 4.0 71.7 1.0
CD2 B:PHE97 4.0 64.1 1.0
CAL B:9EU1201 4.1 80.7 1.0
O B:GLY94 4.1 72.4 1.0
C B:GLY94 4.2 71.0 1.0
CAO B:9EU1201 4.3 70.7 1.0
N B:GLY94 4.4 65.8 1.0
CE2 B:PHE174 4.4 71.5 1.0
CBE B:9EU1201 4.5 72.2 1.0
CZ2 B:TRP73 4.6 66.0 1.0
CE2 B:PHE97 4.7 66.9 1.0
CB B:PHE97 4.8 60.0 1.0
CG B:PHE97 4.8 61.2 1.0
CD1 B:PHE174 4.8 70.2 1.0
CE2 B:PHE152 4.8 73.5 1.0
CAV B:9EU1201 4.8 90.5 1.0
CH2 B:TRP73 4.8 66.5 1.0

Reference:

C.Cao, Q.Tan, C.Xu, L.He, L.Yang, Y.Zhou, Y.Zhou, A.Qiao, M.Lu, C.Yi, G.W.Han, X.Wang, X.Li, H.Yang, Z.Rao, H.Jiang, Y.Zhao, J.Liu, R.C.Stevens, Q.Zhao, X.C.Zhang, B.Wu. Structural Basis For Signal Recognition and Transduction By Platelet-Activating-Factor Receptor. Nat. Struct. Mol. Biol. V. 25 488 2018.
ISSN: ESSN 1545-9985
PubMed: 29808000
DOI: 10.1038/S41594-018-0068-Y
Page generated: Sun Dec 13 12:43:46 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy