Atomistry » Fluorine » PDB 5zc5-6aky » 6a1n
Atomistry »
  Fluorine »
    PDB 5zc5-6aky »
      6a1n »

Fluorine in PDB 6a1n: Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid

Enzymatic activity of Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid

All present enzymatic activity of Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid:
1.1.3.46;

Protein crystallography data

The structure of Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid, PDB code: 6a1n was solved by T.L.Li, K.H.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.42
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 138.156, 138.156, 111.838, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 18.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid (pdb code 6a1n). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid, PDB code: 6a1n:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6a1n

Go back to Fluorine Binding Sites List in 6a1n
Fluorine binding site 1 out of 2 in the Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:87.0
occ:1.00
FAK A:9O6403 0.0 87.0 1.0
CAG A:9O6403 1.3 58.5 1.0
CAE A:9O6403 2.3 39.4 1.0
CAH A:9O6403 2.3 46.7 1.0
CAI A:9O6403 2.8 60.5 1.0
CD1 A:LEU354 3.0 28.2 1.0
OAL A:9O6403 3.0 68.8 1.0
CAD A:9O6403 3.0 29.6 1.0
CAF A:9O6403 3.2 53.4 1.0
OAJ A:9O6403 3.5 45.3 1.0
OAM A:9O6403 3.7 51.0 1.0
CG A:LEU354 3.7 22.9 1.0
CD2 A:LEU354 3.9 25.8 1.0
CAC A:9O6403 4.3 20.4 1.0
CAA A:9O6403 4.4 30.6 1.0
O A:HOH876 4.5 26.0 1.0
CAB A:9O6403 4.8 20.9 1.0
O A:HOH614 4.8 40.1 1.0

Fluorine binding site 2 out of 2 in 6a1n

Go back to Fluorine Binding Sites List in 6a1n
Fluorine binding site 2 out of 2 in the Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3- Phenylpropanoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:50.6
occ:1.00
FAK A:9O6404 0.0 50.6 1.0
CAG A:9O6404 1.6 33.3 1.0
CAE A:9O6404 2.4 56.8 1.0
CAH A:9O6404 2.5 31.9 1.0
CAD A:9O6404 2.7 61.5 1.0
OAJ A:9O6404 2.9 23.1 1.0
CAI A:9O6404 3.0 31.7 1.0
NH2 A:ARG163 3.4 14.6 1.0
OAL A:9O6404 3.6 16.5 1.0
OAM A:9O6404 3.6 27.0 1.0
CAF A:9O6404 3.7 36.9 1.0
CG A:MET160 3.9 21.6 1.0
CAC A:9O6404 4.1 61.5 1.0
CB A:MET160 4.1 20.4 1.0
CZ A:ARG163 4.3 16.5 1.0
CG1 A:VAL157 4.3 17.4 1.0
NH1 A:ARG163 4.4 19.8 1.0
OE1 A:GLN256 4.4 14.1 1.0
CZ A:PHE128 4.5 16.2 1.0
CA A:MET160 4.5 18.4 1.0
SD A:MET160 4.5 30.0 1.0
NE2 A:HIS252 4.7 12.1 1.0
CAA A:9O6404 4.8 50.1 1.0
CG2 A:VAL157 4.9 13.2 1.0
CAB A:9O6404 5.0 53.1 1.0

Reference:

T.L.Li, K.H.Lin. The Crystal Structure of Mandelate Oxidase Mutant-Y128F with (2R,3S)-3-Fluoro-2-Hydroxy-3-Phenylpropanoic Acid To Be Published.
Page generated: Thu Aug 1 17:35:24 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy