Fluorine in PDB 6b0t: Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Protein crystallography data
The structure of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule, PDB code: 6b0t
was solved by
R.Dey,
X.Y.Huang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.44 /
2.80
|
Space group
|
P 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
102.577,
59.255,
293.651,
90.00,
90.03,
90.00
|
R / Rfree (%)
|
26.5 /
30.3
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Fluorine atom in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
(pdb code 6b0t). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the
Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule, PDB code: 6b0t:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 1 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:71.6
occ:1.00
|
F1
|
A:C7V501
|
0.0
|
71.6
|
1.0
|
C1
|
A:C7V501
|
1.3
|
0.8
|
1.0
|
F2
|
A:C7V501
|
2.1
|
0.9
|
1.0
|
F3
|
A:C7V501
|
2.1
|
0.2
|
1.0
|
C2
|
A:C7V501
|
2.3
|
73.8
|
1.0
|
HD21
|
A:LEU16
|
2.5
|
25.8
|
1.0
|
H201
|
A:C7V501
|
2.8
|
82.7
|
1.0
|
C20
|
A:C7V501
|
2.9
|
68.7
|
1.0
|
HD11
|
A:LEU16
|
2.9
|
22.7
|
1.0
|
CD2
|
A:LEU16
|
3.3
|
37.4
|
1.0
|
HD22
|
A:LEU16
|
3.3
|
25.8
|
1.0
|
C3
|
A:C7V501
|
3.4
|
66.5
|
1.0
|
HG22
|
A:VAL134
|
3.5
|
37.3
|
1.0
|
CD1
|
A:LEU16
|
3.6
|
37.9
|
1.0
|
H31
|
A:C7V501
|
3.6
|
80.1
|
1.0
|
HB2
|
A:TRP101
|
3.7
|
41.4
|
1.0
|
HD13
|
A:LEU16
|
3.7
|
22.7
|
1.0
|
HD11
|
A:LEU103
|
4.0
|
33.0
|
1.0
|
CG
|
A:LEU16
|
4.0
|
36.4
|
1.0
|
HD23
|
A:LEU16
|
4.0
|
25.8
|
1.0
|
HG
|
A:LEU103
|
4.0
|
49.8
|
1.0
|
HG21
|
A:VAL134
|
4.0
|
37.3
|
1.0
|
CG2
|
A:VAL134
|
4.0
|
48.6
|
1.0
|
HE1
|
A:PHE14
|
4.1
|
18.1
|
1.0
|
HG23
|
A:VAL134
|
4.1
|
37.3
|
1.0
|
HD21
|
A:LEU103
|
4.1
|
51.1
|
1.0
|
HB3
|
A:TRP101
|
4.2
|
41.4
|
1.0
|
C19
|
A:C7V501
|
4.2
|
67.6
|
1.0
|
HG
|
A:LEU16
|
4.3
|
20.7
|
1.0
|
CB
|
A:TRP101
|
4.3
|
58.8
|
1.0
|
HD12
|
A:LEU16
|
4.5
|
22.7
|
1.0
|
HD11
|
A:LEU62
|
4.5
|
38.4
|
1.0
|
HB2
|
A:TRP132
|
4.5
|
26.1
|
1.0
|
C4
|
A:C7V501
|
4.6
|
62.9
|
1.0
|
CG
|
A:LEU103
|
4.6
|
68.3
|
1.0
|
CE1
|
A:PHE14
|
4.7
|
33.5
|
1.0
|
CD1
|
A:LEU103
|
4.7
|
65.7
|
1.0
|
CG
|
A:TRP101
|
4.7
|
59.2
|
1.0
|
HD21
|
A:LEU62
|
4.7
|
39.1
|
1.0
|
H191
|
A:C7V501
|
4.8
|
81.4
|
1.0
|
HZ
|
A:PHE14
|
4.8
|
30.6
|
1.0
|
CD2
|
A:LEU103
|
4.8
|
70.7
|
1.0
|
C5
|
A:C7V501
|
4.8
|
64.5
|
1.0
|
HG23
|
A:ILE93
|
4.9
|
29.8
|
1.0
|
HD12
|
A:LEU103
|
4.9
|
33.0
|
1.0
|
|
Fluorine binding site 2 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 2 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:0.9
occ:1.00
|
F2
|
A:C7V501
|
0.0
|
0.9
|
1.0
|
C1
|
A:C7V501
|
1.3
|
0.8
|
1.0
|
F1
|
A:C7V501
|
2.1
|
71.6
|
1.0
|
F3
|
A:C7V501
|
2.1
|
0.2
|
1.0
|
C2
|
A:C7V501
|
2.4
|
73.8
|
1.0
|
HD21
|
A:LEU103
|
2.4
|
51.1
|
1.0
|
H201
|
A:C7V501
|
2.8
|
82.7
|
1.0
|
C20
|
A:C7V501
|
2.9
|
68.7
|
1.0
|
HG12
|
A:ILE93
|
3.0
|
49.2
|
1.0
|
HG
|
A:LEU103
|
3.1
|
49.8
|
1.0
|
CD2
|
A:LEU103
|
3.1
|
70.7
|
1.0
|
HD23
|
A:LEU103
|
3.3
|
51.1
|
1.0
|
HG23
|
A:ILE93
|
3.4
|
29.8
|
1.0
|
C3
|
A:C7V501
|
3.5
|
66.5
|
1.0
|
HD11
|
A:LEU103
|
3.5
|
33.0
|
1.0
|
CG
|
A:LEU103
|
3.6
|
68.3
|
1.0
|
H31
|
A:C7V501
|
3.7
|
80.1
|
1.0
|
HD13
|
A:ILE93
|
3.9
|
54.3
|
1.0
|
CG1
|
A:ILE93
|
3.9
|
52.4
|
1.0
|
HD22
|
A:LEU103
|
4.0
|
51.1
|
1.0
|
CD1
|
A:LEU103
|
4.0
|
65.7
|
1.0
|
HB3
|
A:TRP101
|
4.1
|
41.4
|
1.0
|
CG2
|
A:ILE93
|
4.2
|
53.2
|
1.0
|
HD11
|
A:ILE93
|
4.2
|
54.3
|
1.0
|
C19
|
A:C7V501
|
4.2
|
67.6
|
1.0
|
HD11
|
A:LEU16
|
4.2
|
22.7
|
1.0
|
CD1
|
A:ILE93
|
4.2
|
51.1
|
1.0
|
HG21
|
A:ILE93
|
4.3
|
29.8
|
1.0
|
HD11
|
A:LEU48
|
4.3
|
42.6
|
1.0
|
HA
|
A:ILE93
|
4.4
|
37.9
|
1.0
|
HB2
|
A:TRP101
|
4.4
|
41.4
|
1.0
|
HD11
|
A:LEU62
|
4.5
|
38.4
|
1.0
|
HG21
|
A:VAL60
|
4.5
|
41.6
|
1.0
|
HD21
|
A:LEU16
|
4.6
|
25.8
|
1.0
|
HG13
|
A:ILE93
|
4.6
|
49.2
|
1.0
|
CB
|
A:ILE93
|
4.6
|
54.8
|
1.0
|
HD12
|
A:LEU103
|
4.6
|
33.0
|
1.0
|
C4
|
A:C7V501
|
4.6
|
62.9
|
1.0
|
HD13
|
A:LEU48
|
4.6
|
42.6
|
1.0
|
CB
|
A:TRP101
|
4.7
|
58.8
|
1.0
|
HD21
|
A:LEU62
|
4.7
|
39.1
|
1.0
|
HD13
|
A:LEU103
|
4.7
|
33.0
|
1.0
|
H191
|
A:C7V501
|
4.8
|
81.4
|
1.0
|
C5
|
A:C7V501
|
4.9
|
64.5
|
1.0
|
CD1
|
A:LEU48
|
4.9
|
55.9
|
1.0
|
HA
|
A:LEU103
|
4.9
|
43.4
|
1.0
|
O
|
A:SER102
|
5.0
|
60.5
|
1.0
|
CB
|
A:LEU103
|
5.0
|
69.7
|
1.0
|
HG
|
A:LEU62
|
5.0
|
35.0
|
1.0
|
HG22
|
A:ILE93
|
5.0
|
29.8
|
1.0
|
|
Fluorine binding site 3 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 3 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:0.2
occ:1.00
|
F3
|
A:C7V501
|
0.0
|
0.2
|
1.0
|
C1
|
A:C7V501
|
1.3
|
0.8
|
1.0
|
F1
|
A:C7V501
|
2.1
|
71.6
|
1.0
|
F2
|
A:C7V501
|
2.1
|
0.9
|
1.0
|
C2
|
A:C7V501
|
2.4
|
73.8
|
1.0
|
H31
|
A:C7V501
|
2.5
|
80.1
|
1.0
|
HD11
|
A:LEU16
|
2.7
|
22.7
|
1.0
|
HD21
|
A:LEU62
|
2.7
|
39.1
|
1.0
|
C3
|
A:C7V501
|
2.8
|
66.5
|
1.0
|
HD11
|
A:LEU62
|
3.0
|
38.4
|
1.0
|
HD11
|
A:LEU103
|
3.2
|
33.0
|
1.0
|
HZ
|
A:PHE14
|
3.3
|
30.6
|
1.0
|
HD21
|
A:LEU103
|
3.3
|
51.1
|
1.0
|
HD13
|
A:LEU48
|
3.4
|
42.6
|
1.0
|
HE1
|
A:PHE14
|
3.4
|
18.1
|
1.0
|
C20
|
A:C7V501
|
3.6
|
68.7
|
1.0
|
CD2
|
A:LEU62
|
3.7
|
50.9
|
1.0
|
HD11
|
A:LEU48
|
3.7
|
42.6
|
1.0
|
CD1
|
A:LEU16
|
3.7
|
37.9
|
1.0
|
HD21
|
A:LEU16
|
3.7
|
25.8
|
1.0
|
HG
|
A:LEU62
|
3.7
|
35.0
|
1.0
|
CZ
|
A:PHE14
|
3.8
|
34.6
|
1.0
|
CD1
|
A:LEU62
|
3.9
|
51.7
|
1.0
|
H201
|
A:C7V501
|
3.9
|
82.7
|
1.0
|
CE1
|
A:PHE14
|
3.9
|
33.5
|
1.0
|
CD1
|
A:LEU48
|
3.9
|
55.9
|
1.0
|
CG
|
A:LEU62
|
4.0
|
53.1
|
1.0
|
HD13
|
A:LEU16
|
4.0
|
22.7
|
1.0
|
HD12
|
A:LEU16
|
4.1
|
22.7
|
1.0
|
HD23
|
A:LEU62
|
4.1
|
39.1
|
1.0
|
CD1
|
A:LEU103
|
4.1
|
65.7
|
1.0
|
C4
|
A:C7V501
|
4.2
|
62.9
|
1.0
|
CD2
|
A:LEU103
|
4.2
|
70.7
|
1.0
|
HG
|
A:LEU103
|
4.2
|
49.8
|
1.0
|
HD22
|
A:LEU62
|
4.2
|
39.1
|
1.0
|
HD12
|
A:LEU48
|
4.4
|
42.6
|
1.0
|
CG
|
A:LEU103
|
4.4
|
68.3
|
1.0
|
HD12
|
A:LEU62
|
4.4
|
38.4
|
1.0
|
CD2
|
A:LEU16
|
4.5
|
37.4
|
1.0
|
HD13
|
A:LEU62
|
4.5
|
38.4
|
1.0
|
CG
|
A:LEU16
|
4.5
|
36.4
|
1.0
|
HG
|
A:LEU16
|
4.5
|
20.7
|
1.0
|
HG12
|
A:ILE93
|
4.6
|
49.2
|
1.0
|
HD12
|
A:LEU103
|
4.7
|
33.0
|
1.0
|
HD13
|
A:LEU103
|
4.7
|
33.0
|
1.0
|
H41
|
A:C7V501
|
4.7
|
75.7
|
1.0
|
HD23
|
A:LEU103
|
4.7
|
51.1
|
1.0
|
HD22
|
A:LEU103
|
4.7
|
51.1
|
1.0
|
HG22
|
A:VAL134
|
4.7
|
37.3
|
1.0
|
HD22
|
A:LEU16
|
4.8
|
25.8
|
1.0
|
C19
|
A:C7V501
|
4.8
|
67.6
|
1.0
|
HD22
|
A:LEU48
|
4.8
|
40.2
|
1.0
|
C5
|
A:C7V501
|
5.0
|
64.5
|
1.0
|
HD21
|
A:LEU48
|
5.0
|
40.2
|
1.0
|
HD11
|
A:ILE93
|
5.0
|
54.3
|
1.0
|
|
Fluorine binding site 4 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 4 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:70.3
occ:1.00
|
F1
|
B:C7V501
|
0.0
|
70.3
|
1.0
|
C1
|
B:C7V501
|
1.3
|
0.8
|
1.0
|
F2
|
B:C7V501
|
2.1
|
0.9
|
1.0
|
F3
|
B:C7V501
|
2.1
|
0.2
|
1.0
|
HD21
|
B:LEU16
|
2.3
|
26.3
|
1.0
|
C2
|
B:C7V501
|
2.3
|
70.5
|
1.0
|
H201
|
B:C7V501
|
2.8
|
75.5
|
1.0
|
C20
|
B:C7V501
|
2.9
|
62.7
|
1.0
|
HD11
|
B:LEU16
|
3.0
|
23.2
|
1.0
|
CD2
|
B:LEU16
|
3.2
|
30.7
|
1.0
|
HG22
|
B:VAL134
|
3.2
|
37.8
|
1.0
|
HD22
|
B:LEU16
|
3.4
|
26.3
|
1.0
|
C3
|
B:C7V501
|
3.4
|
61.4
|
1.0
|
H31
|
B:C7V501
|
3.6
|
74.0
|
1.0
|
CD1
|
B:LEU16
|
3.7
|
30.6
|
1.0
|
HD23
|
B:LEU16
|
3.8
|
26.3
|
1.0
|
CG2
|
B:VAL134
|
3.8
|
29.1
|
1.0
|
HG21
|
B:VAL134
|
3.8
|
37.8
|
1.0
|
HG
|
B:LEU103
|
3.8
|
50.2
|
1.0
|
HG23
|
B:VAL134
|
3.8
|
37.8
|
1.0
|
HB2
|
B:TRP101
|
3.9
|
41.9
|
1.0
|
HD13
|
B:LEU16
|
3.9
|
23.2
|
1.0
|
CG
|
B:LEU16
|
3.9
|
30.6
|
1.0
|
HG
|
B:LEU16
|
4.1
|
21.1
|
1.0
|
HE1
|
B:PHE14
|
4.1
|
18.6
|
1.0
|
C19
|
B:C7V501
|
4.2
|
67.6
|
1.0
|
HD11
|
B:LEU103
|
4.2
|
33.4
|
1.0
|
HB3
|
B:TRP101
|
4.2
|
41.9
|
1.0
|
HD21
|
B:LEU103
|
4.2
|
51.5
|
1.0
|
HD21
|
B:LEU62
|
4.4
|
39.6
|
1.0
|
HB2
|
B:TRP132
|
4.5
|
26.5
|
1.0
|
CB
|
B:TRP101
|
4.5
|
41.8
|
1.0
|
HD12
|
B:LEU16
|
4.5
|
23.2
|
1.0
|
C4
|
B:C7V501
|
4.6
|
59.2
|
1.0
|
CG
|
B:LEU103
|
4.6
|
42.0
|
1.0
|
CE1
|
B:PHE14
|
4.7
|
27.0
|
1.0
|
H191
|
B:C7V501
|
4.8
|
81.4
|
1.0
|
CD1
|
B:LEU103
|
4.8
|
41.0
|
1.0
|
HD11
|
B:LEU62
|
4.8
|
38.9
|
1.0
|
CD2
|
B:LEU103
|
4.8
|
44.0
|
1.0
|
HG23
|
B:ILE93
|
4.8
|
30.3
|
1.0
|
C5
|
B:C7V501
|
4.8
|
60.0
|
1.0
|
CG
|
B:TRP101
|
4.9
|
42.6
|
1.0
|
HZ
|
B:PHE14
|
4.9
|
31.0
|
1.0
|
HD12
|
B:LEU103
|
4.9
|
33.4
|
1.0
|
HG12
|
B:ILE93
|
5.0
|
49.7
|
1.0
|
|
Fluorine binding site 5 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 5 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:0.9
occ:1.00
|
F2
|
B:C7V501
|
0.0
|
0.9
|
1.0
|
C1
|
B:C7V501
|
1.3
|
0.8
|
1.0
|
F1
|
B:C7V501
|
2.1
|
70.3
|
1.0
|
F3
|
B:C7V501
|
2.1
|
0.2
|
1.0
|
C2
|
B:C7V501
|
2.4
|
70.5
|
1.0
|
HD21
|
B:LEU103
|
2.5
|
51.5
|
1.0
|
H201
|
B:C7V501
|
2.8
|
75.5
|
1.0
|
C20
|
B:C7V501
|
2.9
|
62.7
|
1.0
|
HG
|
B:LEU103
|
3.0
|
50.2
|
1.0
|
HG12
|
B:ILE93
|
3.0
|
49.7
|
1.0
|
CD2
|
B:LEU103
|
3.1
|
44.0
|
1.0
|
HD23
|
B:LEU103
|
3.2
|
51.5
|
1.0
|
C3
|
B:C7V501
|
3.5
|
61.4
|
1.0
|
CG
|
B:LEU103
|
3.5
|
42.0
|
1.0
|
HD11
|
B:LEU103
|
3.6
|
33.4
|
1.0
|
HD11
|
B:LEU62
|
3.6
|
38.9
|
1.0
|
HG23
|
B:ILE93
|
3.6
|
30.3
|
1.0
|
H31
|
B:C7V501
|
3.7
|
74.0
|
1.0
|
HD13
|
B:ILE93
|
3.9
|
54.8
|
1.0
|
CG1
|
B:ILE93
|
3.9
|
40.9
|
1.0
|
HD22
|
B:LEU103
|
4.0
|
51.5
|
1.0
|
HD11
|
B:ILE93
|
4.0
|
54.8
|
1.0
|
HD11
|
B:LEU16
|
4.1
|
23.2
|
1.0
|
CD1
|
B:LEU103
|
4.1
|
41.0
|
1.0
|
CD1
|
B:ILE93
|
4.2
|
40.5
|
1.0
|
C19
|
B:C7V501
|
4.2
|
67.6
|
1.0
|
HD11
|
B:LEU48
|
4.3
|
43.1
|
1.0
|
HD21
|
B:LEU16
|
4.3
|
26.3
|
1.0
|
HD21
|
B:LEU62
|
4.3
|
39.6
|
1.0
|
HB3
|
B:TRP101
|
4.4
|
41.9
|
1.0
|
CG2
|
B:ILE93
|
4.4
|
38.7
|
1.0
|
HD13
|
B:LEU48
|
4.4
|
43.1
|
1.0
|
HG21
|
B:ILE93
|
4.4
|
30.3
|
1.0
|
HA
|
B:ILE93
|
4.5
|
38.4
|
1.0
|
HG13
|
B:ILE93
|
4.5
|
49.7
|
1.0
|
HG21
|
B:VAL60
|
4.5
|
42.1
|
1.0
|
CD1
|
B:LEU62
|
4.6
|
38.3
|
1.0
|
C4
|
B:C7V501
|
4.6
|
59.2
|
1.0
|
HD12
|
B:LEU103
|
4.6
|
33.4
|
1.0
|
CB
|
B:ILE93
|
4.7
|
41.3
|
1.0
|
HA
|
B:LEU103
|
4.7
|
43.8
|
1.0
|
HB2
|
B:TRP101
|
4.8
|
41.9
|
1.0
|
H191
|
B:C7V501
|
4.8
|
81.4
|
1.0
|
HD13
|
B:LEU103
|
4.8
|
33.4
|
1.0
|
CD1
|
B:LEU48
|
4.8
|
39.4
|
1.0
|
HD13
|
B:LEU62
|
4.8
|
38.9
|
1.0
|
CB
|
B:LEU103
|
4.8
|
41.9
|
1.0
|
C5
|
B:C7V501
|
4.9
|
60.0
|
1.0
|
HD21
|
B:LEU48
|
5.0
|
40.6
|
1.0
|
CD1
|
B:LEU16
|
5.0
|
30.6
|
1.0
|
CB
|
B:TRP101
|
5.0
|
41.8
|
1.0
|
|
Fluorine binding site 6 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 6 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:0.2
occ:1.00
|
F3
|
B:C7V501
|
0.0
|
0.2
|
1.0
|
C1
|
B:C7V501
|
1.3
|
0.8
|
1.0
|
F1
|
B:C7V501
|
2.1
|
70.3
|
1.0
|
F2
|
B:C7V501
|
2.1
|
0.9
|
1.0
|
C2
|
B:C7V501
|
2.4
|
70.5
|
1.0
|
H31
|
B:C7V501
|
2.5
|
74.0
|
1.0
|
HD11
|
B:LEU16
|
2.7
|
23.2
|
1.0
|
C3
|
B:C7V501
|
2.8
|
61.4
|
1.0
|
HD21
|
B:LEU62
|
2.8
|
39.6
|
1.0
|
HD11
|
B:LEU62
|
3.0
|
38.9
|
1.0
|
HE1
|
B:PHE14
|
3.1
|
18.6
|
1.0
|
HZ
|
B:PHE14
|
3.1
|
31.0
|
1.0
|
HD13
|
B:LEU48
|
3.3
|
43.1
|
1.0
|
HD21
|
B:LEU103
|
3.5
|
51.5
|
1.0
|
HD21
|
B:LEU16
|
3.5
|
26.3
|
1.0
|
HD11
|
B:LEU103
|
3.5
|
33.4
|
1.0
|
CE1
|
B:PHE14
|
3.6
|
27.0
|
1.0
|
CZ
|
B:PHE14
|
3.6
|
27.9
|
1.0
|
C20
|
B:C7V501
|
3.6
|
62.7
|
1.0
|
CD1
|
B:LEU16
|
3.6
|
30.6
|
1.0
|
CD2
|
B:LEU62
|
3.7
|
37.1
|
1.0
|
HD11
|
B:LEU48
|
3.8
|
43.1
|
1.0
|
CD1
|
B:LEU62
|
3.9
|
38.3
|
1.0
|
H201
|
B:C7V501
|
3.9
|
75.5
|
1.0
|
HG
|
B:LEU62
|
3.9
|
35.5
|
1.0
|
CD1
|
B:LEU48
|
4.0
|
39.4
|
1.0
|
HD12
|
B:LEU16
|
4.1
|
23.2
|
1.0
|
CG
|
B:LEU62
|
4.1
|
37.6
|
1.0
|
HD13
|
B:LEU16
|
4.1
|
23.2
|
1.0
|
HG
|
B:LEU103
|
4.2
|
50.2
|
1.0
|
C4
|
B:C7V501
|
4.2
|
59.2
|
1.0
|
HG
|
B:LEU16
|
4.2
|
21.1
|
1.0
|
HD23
|
B:LEU62
|
4.3
|
39.6
|
1.0
|
HD22
|
B:LEU62
|
4.3
|
39.6
|
1.0
|
CD2
|
B:LEU16
|
4.3
|
30.7
|
1.0
|
CG
|
B:LEU16
|
4.3
|
30.6
|
1.0
|
HG22
|
B:VAL134
|
4.3
|
37.8
|
1.0
|
CD2
|
B:LEU103
|
4.4
|
44.0
|
1.0
|
CD1
|
B:LEU103
|
4.4
|
41.0
|
1.0
|
HD13
|
B:LEU62
|
4.4
|
38.9
|
1.0
|
HD12
|
B:LEU48
|
4.5
|
43.1
|
1.0
|
HD12
|
B:LEU62
|
4.5
|
38.9
|
1.0
|
CG
|
B:LEU103
|
4.5
|
42.0
|
1.0
|
HD22
|
B:LEU48
|
4.6
|
40.6
|
1.0
|
H41
|
B:C7V501
|
4.7
|
71.3
|
1.0
|
HD22
|
B:LEU16
|
4.7
|
26.3
|
1.0
|
HG12
|
B:ILE93
|
4.7
|
49.7
|
1.0
|
CD1
|
B:PHE14
|
4.8
|
27.6
|
1.0
|
CE2
|
B:PHE14
|
4.8
|
28.4
|
1.0
|
C19
|
B:C7V501
|
4.8
|
67.6
|
1.0
|
HD23
|
B:LEU103
|
4.8
|
51.5
|
1.0
|
HG21
|
B:VAL134
|
4.8
|
37.8
|
1.0
|
HD12
|
B:LEU103
|
4.9
|
33.4
|
1.0
|
HD11
|
B:ILE93
|
4.9
|
54.8
|
1.0
|
HD21
|
B:LEU48
|
4.9
|
40.6
|
1.0
|
C5
|
B:C7V501
|
5.0
|
60.0
|
1.0
|
HD22
|
B:LEU103
|
5.0
|
51.5
|
1.0
|
|
Fluorine binding site 7 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 7 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F501
b:76.8
occ:1.00
|
F1
|
C:C7V501
|
0.0
|
76.8
|
1.0
|
C1
|
C:C7V501
|
1.3
|
0.8
|
1.0
|
F2
|
C:C7V501
|
2.1
|
0.9
|
1.0
|
F3
|
C:C7V501
|
2.1
|
0.2
|
1.0
|
C2
|
C:C7V501
|
2.3
|
75.1
|
1.0
|
HD21
|
C:LEU16
|
2.6
|
26.3
|
1.0
|
H201
|
C:C7V501
|
2.8
|
85.4
|
1.0
|
C20
|
C:C7V501
|
2.9
|
70.9
|
1.0
|
HD22
|
C:LEU16
|
3.2
|
26.3
|
1.0
|
CD2
|
C:LEU16
|
3.3
|
37.9
|
1.0
|
C3
|
C:C7V501
|
3.4
|
69.1
|
1.0
|
HG
|
C:LEU103
|
3.5
|
50.2
|
1.0
|
HB2
|
C:TRP101
|
3.5
|
41.9
|
1.0
|
HG22
|
C:VAL134
|
3.5
|
37.8
|
1.0
|
HB3
|
C:TRP101
|
3.5
|
41.9
|
1.0
|
H31
|
C:C7V501
|
3.6
|
83.2
|
1.0
|
HD11
|
C:LEU16
|
3.8
|
23.2
|
1.0
|
HG21
|
C:VAL134
|
3.8
|
37.8
|
1.0
|
HD21
|
C:LEU103
|
3.9
|
51.5
|
1.0
|
HG23
|
C:VAL134
|
3.9
|
37.8
|
1.0
|
HD23
|
C:LEU16
|
3.9
|
26.3
|
1.0
|
CG2
|
C:VAL134
|
3.9
|
55.5
|
1.0
|
CB
|
C:TRP101
|
3.9
|
74.3
|
1.0
|
HD11
|
C:LEU103
|
4.0
|
33.4
|
1.0
|
C19
|
C:C7V501
|
4.2
|
67.6
|
1.0
|
HD13
|
C:LEU16
|
4.2
|
23.2
|
1.0
|
CG
|
C:LEU103
|
4.2
|
60.9
|
1.0
|
HB2
|
C:TRP132
|
4.3
|
26.5
|
1.0
|
CD1
|
C:LEU16
|
4.3
|
38.5
|
1.0
|
CG
|
C:TRP101
|
4.4
|
75.3
|
1.0
|
CD2
|
C:LEU103
|
4.4
|
62.8
|
1.0
|
CG
|
C:LEU16
|
4.4
|
37.5
|
1.0
|
HG23
|
C:ILE93
|
4.5
|
30.3
|
1.0
|
HD21
|
C:LEU62
|
4.5
|
39.6
|
1.0
|
HD23
|
C:LEU103
|
4.5
|
51.5
|
1.0
|
C4
|
C:C7V501
|
4.6
|
64.6
|
1.0
|
CD1
|
C:LEU103
|
4.6
|
59.1
|
1.0
|
HE1
|
C:PHE14
|
4.6
|
18.6
|
1.0
|
HG12
|
C:ILE93
|
4.7
|
49.7
|
1.0
|
H191
|
C:C7V501
|
4.8
|
81.4
|
1.0
|
HD12
|
C:LEU103
|
4.8
|
33.4
|
1.0
|
HG
|
C:LEU16
|
4.8
|
21.1
|
1.0
|
C5
|
C:C7V501
|
4.8
|
65.6
|
1.0
|
HD11
|
C:LEU62
|
4.9
|
38.9
|
1.0
|
CD1
|
C:TRP101
|
4.9
|
77.4
|
1.0
|
CD2
|
C:TRP101
|
5.0
|
74.2
|
1.0
|
|
Fluorine binding site 8 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 8 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F501
b:0.9
occ:1.00
|
F2
|
C:C7V501
|
0.0
|
0.9
|
1.0
|
C1
|
C:C7V501
|
1.3
|
0.8
|
1.0
|
F1
|
C:C7V501
|
2.1
|
76.8
|
1.0
|
F3
|
C:C7V501
|
2.1
|
0.2
|
1.0
|
C2
|
C:C7V501
|
2.4
|
75.1
|
1.0
|
HD21
|
C:LEU103
|
2.5
|
51.5
|
1.0
|
HG12
|
C:ILE93
|
2.7
|
49.7
|
1.0
|
H201
|
C:C7V501
|
2.8
|
85.4
|
1.0
|
HD23
|
C:LEU103
|
2.8
|
51.5
|
1.0
|
HG
|
C:LEU103
|
2.9
|
50.2
|
1.0
|
C20
|
C:C7V501
|
2.9
|
70.9
|
1.0
|
CD2
|
C:LEU103
|
3.0
|
62.8
|
1.0
|
HG23
|
C:ILE93
|
3.1
|
30.3
|
1.0
|
CG
|
C:LEU103
|
3.4
|
60.9
|
1.0
|
C3
|
C:C7V501
|
3.5
|
69.1
|
1.0
|
CG1
|
C:ILE93
|
3.6
|
54.8
|
1.0
|
H31
|
C:C7V501
|
3.7
|
83.2
|
1.0
|
HA
|
C:ILE93
|
3.7
|
38.4
|
1.0
|
HB3
|
C:TRP101
|
3.8
|
41.9
|
1.0
|
HD22
|
C:LEU103
|
3.9
|
51.5
|
1.0
|
HD11
|
C:LEU103
|
3.9
|
33.4
|
1.0
|
CG2
|
C:ILE93
|
4.0
|
54.8
|
1.0
|
HD13
|
C:ILE93
|
4.0
|
54.8
|
1.0
|
HD11
|
C:LEU62
|
4.2
|
38.9
|
1.0
|
CD1
|
C:ILE93
|
4.2
|
53.7
|
1.0
|
C19
|
C:C7V501
|
4.2
|
67.6
|
1.0
|
CB
|
C:ILE93
|
4.2
|
56.5
|
1.0
|
HG13
|
C:ILE93
|
4.2
|
49.7
|
1.0
|
HG21
|
C:ILE93
|
4.2
|
30.3
|
1.0
|
HD11
|
C:ILE93
|
4.2
|
54.8
|
1.0
|
HA
|
C:LEU103
|
4.3
|
43.8
|
1.0
|
CD1
|
C:LEU103
|
4.3
|
59.1
|
1.0
|
CA
|
C:ILE93
|
4.5
|
56.5
|
1.0
|
O
|
C:SER102
|
4.5
|
54.5
|
1.0
|
CB
|
C:TRP101
|
4.6
|
74.3
|
1.0
|
HB2
|
C:TRP101
|
4.6
|
41.9
|
1.0
|
HD21
|
C:LEU16
|
4.6
|
26.3
|
1.0
|
HG21
|
C:VAL60
|
4.6
|
42.1
|
1.0
|
C4
|
C:C7V501
|
4.6
|
64.6
|
1.0
|
CB
|
C:LEU103
|
4.7
|
60.8
|
1.0
|
HD1
|
C:TRP101
|
4.7
|
39.1
|
1.0
|
HD11
|
C:LEU48
|
4.7
|
43.1
|
1.0
|
HG22
|
C:ILE93
|
4.7
|
30.3
|
1.0
|
H
|
C:VAL94
|
4.7
|
41.5
|
1.0
|
CA
|
C:LEU103
|
4.8
|
62.3
|
1.0
|
C
|
C:SER102
|
4.8
|
52.4
|
1.0
|
H191
|
C:C7V501
|
4.8
|
81.4
|
1.0
|
HD12
|
C:LEU103
|
4.8
|
33.4
|
1.0
|
N
|
C:LEU103
|
4.9
|
61.6
|
1.0
|
HD21
|
C:LEU62
|
4.9
|
39.6
|
1.0
|
C5
|
C:C7V501
|
4.9
|
65.6
|
1.0
|
CG
|
C:TRP101
|
4.9
|
75.3
|
1.0
|
CD1
|
C:TRP101
|
4.9
|
77.4
|
1.0
|
HD13
|
C:LEU103
|
5.0
|
33.4
|
1.0
|
H
|
C:SER102
|
5.0
|
19.9
|
1.0
|
HD11
|
C:LEU16
|
5.0
|
23.2
|
1.0
|
|
Fluorine binding site 9 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 9 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F501
b:0.2
occ:1.00
|
F3
|
C:C7V501
|
0.0
|
0.2
|
1.0
|
C1
|
C:C7V501
|
1.3
|
0.8
|
1.0
|
F1
|
C:C7V501
|
2.1
|
76.8
|
1.0
|
F2
|
C:C7V501
|
2.1
|
0.9
|
1.0
|
C2
|
C:C7V501
|
2.4
|
75.1
|
1.0
|
H31
|
C:C7V501
|
2.5
|
83.2
|
1.0
|
HD21
|
C:LEU103
|
2.6
|
51.5
|
1.0
|
C3
|
C:C7V501
|
2.8
|
69.1
|
1.0
|
HD11
|
C:LEU62
|
2.9
|
38.9
|
1.0
|
HD21
|
C:LEU62
|
2.9
|
39.6
|
1.0
|
HD11
|
C:LEU103
|
3.0
|
33.4
|
1.0
|
HD11
|
C:LEU16
|
3.2
|
23.2
|
1.0
|
HD21
|
C:LEU16
|
3.3
|
26.3
|
1.0
|
HG
|
C:LEU103
|
3.4
|
50.2
|
1.0
|
CD2
|
C:LEU103
|
3.5
|
62.8
|
1.0
|
C20
|
C:C7V501
|
3.6
|
70.9
|
1.0
|
HD11
|
C:LEU48
|
3.7
|
43.1
|
1.0
|
HD13
|
C:LEU48
|
3.7
|
43.1
|
1.0
|
CG
|
C:LEU103
|
3.8
|
60.9
|
1.0
|
CD1
|
C:LEU103
|
3.8
|
59.1
|
1.0
|
CD1
|
C:LEU62
|
3.8
|
48.0
|
1.0
|
CD2
|
C:LEU62
|
3.8
|
46.1
|
1.0
|
HD23
|
C:LEU103
|
3.9
|
51.5
|
1.0
|
HE1
|
C:PHE14
|
3.9
|
18.6
|
1.0
|
H201
|
C:C7V501
|
3.9
|
85.4
|
1.0
|
HZ
|
C:PHE14
|
4.0
|
31.0
|
1.0
|
CD1
|
C:LEU16
|
4.1
|
38.5
|
1.0
|
HG
|
C:LEU62
|
4.1
|
35.5
|
1.0
|
CD1
|
C:LEU48
|
4.1
|
49.1
|
1.0
|
HD22
|
C:LEU103
|
4.2
|
51.5
|
1.0
|
C4
|
C:C7V501
|
4.2
|
64.6
|
1.0
|
CD2
|
C:LEU16
|
4.2
|
37.9
|
1.0
|
HG12
|
C:ILE93
|
4.2
|
49.7
|
1.0
|
CG
|
C:LEU62
|
4.2
|
46.2
|
1.0
|
HD13
|
C:LEU16
|
4.2
|
23.2
|
1.0
|
HD13
|
C:LEU62
|
4.2
|
38.9
|
1.0
|
HD22
|
C:LEU62
|
4.3
|
39.6
|
1.0
|
HD22
|
C:LEU16
|
4.3
|
26.3
|
1.0
|
HD12
|
C:LEU103
|
4.4
|
33.4
|
1.0
|
HD12
|
C:LEU62
|
4.4
|
38.9
|
1.0
|
HD23
|
C:LEU62
|
4.4
|
39.6
|
1.0
|
HD13
|
C:LEU103
|
4.4
|
33.4
|
1.0
|
CE1
|
C:PHE14
|
4.5
|
36.0
|
1.0
|
CZ
|
C:PHE14
|
4.5
|
37.2
|
1.0
|
CG
|
C:LEU16
|
4.7
|
37.5
|
1.0
|
HD12
|
C:LEU48
|
4.7
|
43.1
|
1.0
|
HG22
|
C:VAL134
|
4.7
|
37.8
|
1.0
|
H41
|
C:C7V501
|
4.7
|
77.8
|
1.0
|
HD21
|
C:LEU48
|
4.7
|
40.6
|
1.0
|
HD12
|
C:LEU16
|
4.8
|
23.2
|
1.0
|
C19
|
C:C7V501
|
4.8
|
67.6
|
1.0
|
HD22
|
C:LEU48
|
4.8
|
40.6
|
1.0
|
HG
|
C:LEU16
|
4.8
|
21.1
|
1.0
|
HG21
|
C:VAL60
|
4.9
|
42.1
|
1.0
|
HD11
|
C:ILE93
|
4.9
|
54.8
|
1.0
|
HD23
|
C:LEU16
|
4.9
|
26.3
|
1.0
|
HG21
|
C:VAL134
|
4.9
|
37.8
|
1.0
|
C5
|
C:C7V501
|
5.0
|
65.6
|
1.0
|
|
Fluorine binding site 10 out
of 18 in 6b0t
Go back to
Fluorine Binding Sites List in 6b0t
Fluorine binding site 10 out
of 18 in the Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small Molecule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F501
b:74.6
occ:1.00
|
F1
|
D:C7V501
|
0.0
|
74.6
|
1.0
|
C1
|
D:C7V501
|
1.3
|
0.8
|
1.0
|
HD21
|
D:LEU16
|
2.1
|
26.6
|
1.0
|
F2
|
D:C7V501
|
2.1
|
0.9
|
1.0
|
F3
|
D:C7V501
|
2.1
|
0.2
|
1.0
|
C2
|
D:C7V501
|
2.3
|
76.0
|
1.0
|
H201
|
D:C7V501
|
2.8
|
87.1
|
1.0
|
C20
|
D:C7V501
|
2.9
|
72.4
|
1.0
|
CD2
|
D:LEU16
|
3.0
|
37.5
|
1.0
|
HG22
|
D:VAL134
|
3.0
|
38.1
|
1.0
|
HD22
|
D:LEU16
|
3.0
|
26.6
|
1.0
|
HD11
|
D:LEU16
|
3.0
|
23.5
|
1.0
|
C3
|
D:C7V501
|
3.4
|
67.2
|
1.0
|
HG21
|
D:VAL134
|
3.4
|
38.1
|
1.0
|
CG2
|
D:VAL134
|
3.5
|
50.8
|
1.0
|
HB2
|
D:TRP101
|
3.6
|
42.2
|
1.0
|
HD23
|
D:LEU16
|
3.6
|
26.6
|
1.0
|
HG23
|
D:VAL134
|
3.6
|
38.1
|
1.0
|
H31
|
D:C7V501
|
3.6
|
80.9
|
1.0
|
CD1
|
D:LEU16
|
3.7
|
39.2
|
1.0
|
HD13
|
D:LEU16
|
3.8
|
23.5
|
1.0
|
CG
|
D:LEU16
|
3.9
|
36.9
|
1.0
|
HB3
|
D:TRP101
|
3.9
|
42.2
|
1.0
|
HE1
|
D:PHE14
|
4.1
|
18.9
|
1.0
|
HG
|
D:LEU16
|
4.1
|
21.4
|
1.0
|
CB
|
D:TRP101
|
4.1
|
72.6
|
1.0
|
HG
|
D:LEU103
|
4.2
|
50.5
|
1.0
|
C19
|
D:C7V501
|
4.2
|
67.6
|
1.0
|
HD21
|
D:LEU62
|
4.3
|
39.9
|
1.0
|
HD21
|
D:LEU103
|
4.4
|
51.9
|
1.0
|
HD11
|
D:LEU103
|
4.4
|
33.7
|
1.0
|
HB2
|
D:TRP132
|
4.5
|
26.8
|
1.0
|
CG
|
D:TRP101
|
4.5
|
72.8
|
1.0
|
C4
|
D:C7V501
|
4.6
|
63.3
|
1.0
|
HD12
|
D:LEU16
|
4.6
|
23.5
|
1.0
|
CE1
|
D:PHE14
|
4.7
|
36.8
|
1.0
|
H191
|
D:C7V501
|
4.8
|
81.4
|
1.0
|
HD11
|
D:LEU62
|
4.8
|
39.2
|
1.0
|
HG23
|
D:ILE93
|
4.8
|
30.6
|
1.0
|
C5
|
D:C7V501
|
4.8
|
64.7
|
1.0
|
CG
|
D:LEU103
|
4.9
|
65.8
|
1.0
|
CB
|
D:VAL134
|
5.0
|
48.6
|
1.0
|
CD2
|
D:TRP101
|
5.0
|
70.6
|
1.0
|
|
Reference:
J.Huang,
R.Dey,
Y.Wang,
J.Jakoncic,
I.Kurinov,
X.Y.Huang.
Structural Insights Into the Induced-Fit Inhibition of Fascin By A Small-Molecule Inhibitor. J. Mol. Biol. V. 430 1324 2018.
ISSN: ESSN 1089-8638
PubMed: 29573988
DOI: 10.1016/J.JMB.2018.03.009
Page generated: Thu Aug 1 17:49:01 2024
|