Fluorine in PDB 6bvn: Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra

The structure of Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra (pdb code 6bvn). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra, PDB code: 6bvn:

Fluorine binding site 1 out of 1 in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra within 5.0Å range: probe atom residue distance (Å) B Occ B:F201 b:67.6 occ:1.00 F01 B:E9D201 0.0 67.6 1.0 C31 B:E9D201 1.4 67.6 1.0 C26 B:E9D201 2.4 67.6 1.0 C30 B:E9D201 2.4 67.6 1.0 H30 B:E9D201 2.5 67.6 1.0 H26 B:E9D201 2.6 67.6 1.0 OG1 B:THR33 2.7 64.5 1.0 O B:ASP29 2.9 67.6 1.0 CB B:THR33 3.1 64.5 1.0 C B:ASP29 3.2 67.6 1.0 CA B:LEU30 3.3 62.6 1.0 CD2 B:LEU30 3.4 62.6 1.0 N B:LEU30 3.4 62.6 1.0 C27 B:E9D201 3.6 67.6 1.0 C29 B:E9D201 3.6 67.6 1.0 CG2 B:THR33 3.8 64.5 1.0 CB B:ASP29 4.0 67.6 1.0 CG B:LEU30 4.0 62.6 1.0 C28 B:E9D201 4.1 67.6 1.0 CA B:ASP29 4.2 67.6 1.0 CB B:LEU30 4.2 62.6 1.0 CG B:PRO25 4.3 56.9 1.0 H27 B:E9D201 4.4 67.6 1.0 C B:LEU30 4.4 62.6 1.0 CA B:THR33 4.5 64.5 1.0 O B:LEU30 4.5 62.6 1.0 CB B:PRO25 4.6 56.9 1.0 N B:THR33 4.6 64.5 1.0 CB C:ARG127 4.7 56.5 1.0

C.J.Schlicksup, J.C.Wang, S.Francis, B.Venkatakrishnan, W.W.Turner, M.Vannieuwenhze, A.Zlotnick. Hepatitis B Virus Core Protein Allosteric Modulators Can Distort and Disrupt Intact Capsids. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29377794
DOI: 10.7554/ELIFE.31473