Fluorine in PDB 6cdx: High-Resolution Crystal Structure of Fluoropropylated Cystine Knot, Binding to Alpha-5 Beta-6 Integrin

Protein crystallography data

The structure of High-Resolution Crystal Structure of Fluoropropylated Cystine Knot, Binding to Alpha-5 Beta-6 Integrin, PDB code: 6cdx was solved by R.Kimura, J.Nix, C.Bongura, S.Chakraborti, S.Gambhir, F.V.Filipp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.82 / 1.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 16.950, 44.250, 66.410, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 22.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the High-Resolution Crystal Structure of Fluoropropylated Cystine Knot, Binding to Alpha-5 Beta-6 Integrin (pdb code 6cdx). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the High-Resolution Crystal Structure of Fluoropropylated Cystine Knot, Binding to Alpha-5 Beta-6 Integrin, PDB code: 6cdx:

Fluorine binding site 1 out of 1 in 6cdx

Go back to Fluorine Binding Sites List in 6cdx
Fluorine binding site 1 out of 1 in the High-Resolution Crystal Structure of Fluoropropylated Cystine Knot, Binding to Alpha-5 Beta-6 Integrin


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of High-Resolution Crystal Structure of Fluoropropylated Cystine Knot, Binding to Alpha-5 Beta-6 Integrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F0

b:20.0
occ:1.00
F A:4LT0 0.0 20.0 1.0
CA A:4LT0 1.4 20.0 1.0
CB A:4LT0 2.3 20.0 1.0
C A:4LT0 2.4 20.0 1.0
N A:GLY1 2.6 5.6 1.0
O A:4LT0 3.5 20.0 1.0
CA A:GLY1 4.0 5.1 1.0
O A:GLY1 4.8 5.7 1.0
C A:GLY1 4.9 4.5 1.0

Reference:

R.Kimura, S.S.Gambhir. High-Resolution Crystal Structure of Fluoropropylated Cystine Knot, Binding to Alpha-5 Beta-6 Integrin To Be Published.
Page generated: Sun Dec 13 12:46:34 2020

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