Fluorine in PDB 6ddg: Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-6

The structure of Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-6 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Fluorine atom in the Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-6 (pdb code 6ddg). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-6, PDB code: 6ddg:

Fluorine binding site 1 out of 1 in the Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-6


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the 50S Ribosomal Subunit From Methicillin Resistant Staphylococcus Aureus in Complex with the Oxazolidinone Antibiotic Lzd-6 within 5.0Å range: probe atom residue distance (Å) B Occ 1:F3001 b:26.0 occ:1.00 F7 1:G6M3001 0.0 26.0 1.0 C2 1:G6M3001 1.3 26.0 1.0 C1 1:G6M3001 2.3 26.0 1.0 C3 1:G6M3001 2.4 26.0 1.0 H3 1:G6M3001 2.6 26.0 1.0 H181 1:G6M3001 2.7 26.0 1.0 N14 1:G6M3001 2.7 26.0 1.0 O4' 1:C2479 2.9 23.3 1.0 H19 1:G6M3001 2.9 26.0 1.0 C6 1:C2479 3.1 23.3 1.0 C19 1:G6M3001 3.2 26.0 1.0 N3 1:A2478 3.3 19.9 1.0 C4 1:A2478 3.4 19.9 1.0 C2 1:A2478 3.4 19.9 1.0 C18 1:G6M3001 3.4 26.0 1.0 N1 1:C2479 3.4 23.3 1.0 H15 1:G6M3001 3.5 26.0 1.0 C1' 1:C2479 3.6 23.3 1.0 C6 1:G6M3001 3.6 26.0 1.0 C15 1:G6M3001 3.6 26.0 1.0 C4 1:G6M3001 3.6 26.0 1.0 H16 1:G6M3001 3.7 26.0 1.0 C5 1:A2478 3.7 19.9 1.0 N1 1:A2478 3.7 19.9 1.0 C5 1:C2479 3.8 23.3 1.0 C6 1:A2478 3.9 19.9 1.0 N9 1:A2478 4.0 19.9 1.0 C16 1:G6M3001 4.1 26.0 1.0 C5 1:G6M3001 4.1 26.0 1.0 C2' 1:A2478 4.1 19.9 1.0 H18 1:G6M3001 4.1 26.0 1.0 C4' 1:C2479 4.2 23.3 1.0 H191 1:G6M3001 4.2 26.0 1.0 C5' 1:C2479 4.3 23.3 1.0 C2 1:C2479 4.3 23.3 1.0 O17 1:G6M3001 4.3 26.0 1.0 H6 1:G6M3001 4.5 26.0 1.0 N7 1:A2478 4.5 19.9 1.0 C8 1:A2478 4.6 19.9 1.0 H151 1:G6M3001 4.6 26.0 1.0 C4 1:C2479 4.6 23.3 1.0 C1' 1:A2478 4.6 19.9 1.0 N8 1:G6M3001 4.8 26.0 1.0 N6 1:A2478 4.8 19.9 1.0 O2' 1:A2478 4.8 19.9 1.0 N3 1:C2479 4.8 23.3 1.0

M.J.Belousoff, H.Venugopal, A.Wright, S.Seoner, I.Stuart, C.Stubenrauch, R.S.Bamert, D.W.Lupton, T.Lithgow. Cryoem-Guided Development of Antibiotics For Drug-Resistant Bacteria. Chemmedchem V. 14 527 2019.
ISSN: ESSN 1860-7187
PubMed: 30667174
DOI: 10.1002/CMDC.201900042