Fluorine in PDB 6diw: Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
Protein crystallography data
The structure of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71), PDB code: 6diw
was solved by
A.N.Matthew,
C.A.Schiffer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
26.46 /
1.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
55.748,
58.591,
60.111,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.8 /
18
|
Other elements in 6diw:
The structure of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71) also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
(pdb code 6diw). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71), PDB code: 6diw:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 6diw
Go back to
Fluorine Binding Sites List in 6diw
Fluorine binding site 1 out
of 6 in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:24.1
occ:0.56
|
F53
|
A:GKG1201
|
0.0
|
24.1
|
0.6
|
F55
|
A:GKG1201
|
0.8
|
25.3
|
0.4
|
C28
|
A:GKG1201
|
1.4
|
10.4
|
0.6
|
C28
|
A:GKG1201
|
1.5
|
22.6
|
0.4
|
H272
|
A:GKG1201
|
1.7
|
19.7
|
0.4
|
H273
|
A:GKG1201
|
1.8
|
19.7
|
0.4
|
C27
|
A:GKG1201
|
1.9
|
16.4
|
0.4
|
C26
|
A:GKG1201
|
2.1
|
17.2
|
0.4
|
F55
|
A:GKG1201
|
2.2
|
51.9
|
0.6
|
F54
|
A:GKG1201
|
2.2
|
46.3
|
0.6
|
F54
|
A:GKG1201
|
2.2
|
25.1
|
0.4
|
C26
|
A:GKG1201
|
2.5
|
8.8
|
0.6
|
F53
|
A:GKG1201
|
2.6
|
26.2
|
0.4
|
H293
|
A:GKG1201
|
2.7
|
12.8
|
0.6
|
H292
|
A:GKG1201
|
2.8
|
12.8
|
0.6
|
C29
|
A:GKG1201
|
2.8
|
10.6
|
0.6
|
H271
|
A:GKG1201
|
2.9
|
19.7
|
0.4
|
O50
|
A:GKG1201
|
3.0
|
13.0
|
0.4
|
HB3
|
A:ALA1156
|
3.0
|
12.3
|
1.0
|
O50
|
A:GKG1201
|
3.1
|
12.6
|
0.6
|
C29
|
A:GKG1201
|
3.4
|
15.6
|
0.4
|
H292
|
A:GKG1201
|
3.5
|
18.7
|
0.4
|
HB1
|
A:ALA1156
|
3.6
|
12.3
|
1.0
|
HH22
|
A:ARG1155
|
3.7
|
33.8
|
0.5
|
CB
|
A:ALA1156
|
3.7
|
10.2
|
1.0
|
C27
|
A:GKG1201
|
3.8
|
12.4
|
0.6
|
H291
|
A:GKG1201
|
3.8
|
12.8
|
0.6
|
H152
|
A:GKG1201
|
3.8
|
20.9
|
0.4
|
H151
|
A:GKG1201
|
3.8
|
22.3
|
0.6
|
H152
|
A:GKG1201
|
3.9
|
22.3
|
0.6
|
C25
|
A:GKG1201
|
3.9
|
14.6
|
0.4
|
HH12
|
A:ARG1155
|
3.9
|
30.4
|
0.5
|
CB
|
A:ALA1168
|
3.9
|
30.0
|
1.0
|
H293
|
A:GKG1201
|
3.9
|
18.7
|
0.4
|
HH12
|
A:ARG1155
|
3.9
|
30.0
|
0.5
|
H273
|
A:GKG1201
|
4.0
|
14.9
|
0.6
|
HH21
|
A:ARG1123
|
4.0
|
24.4
|
1.0
|
C25
|
A:GKG1201
|
4.0
|
12.1
|
0.6
|
HB2
|
A:ALA1156
|
4.0
|
12.3
|
1.0
|
H272
|
A:GKG1201
|
4.0
|
14.9
|
0.6
|
NH2
|
A:ARG1155
|
4.0
|
28.1
|
0.5
|
H291
|
A:GKG1201
|
4.0
|
18.7
|
0.4
|
H151
|
A:GKG1201
|
4.0
|
20.9
|
0.4
|
HH11
|
A:ARG1155
|
4.1
|
30.0
|
0.5
|
O
|
A:HOH1319
|
4.2
|
50.4
|
1.0
|
O49
|
A:GKG1201
|
4.2
|
13.9
|
0.6
|
C15
|
A:GKG1201
|
4.2
|
18.5
|
0.6
|
NH2
|
A:ARG1123
|
4.2
|
20.3
|
1.0
|
O49
|
A:GKG1201
|
4.2
|
12.1
|
0.4
|
NH1
|
A:ARG1155
|
4.2
|
25.3
|
0.5
|
NH1
|
A:ARG1155
|
4.2
|
25.0
|
0.5
|
C15
|
A:GKG1201
|
4.3
|
17.4
|
0.4
|
H153
|
A:GKG1201
|
4.3
|
22.3
|
0.6
|
H153
|
A:GKG1201
|
4.3
|
20.9
|
0.4
|
CZ
|
A:ARG1155
|
4.3
|
27.3
|
0.5
|
O3
|
A:SO41205
|
4.4
|
42.2
|
0.9
|
O4
|
A:SO41205
|
4.4
|
46.4
|
0.9
|
HH21
|
A:ARG1155
|
4.4
|
33.8
|
0.5
|
HH22
|
A:ARG1123
|
4.5
|
24.4
|
1.0
|
H271
|
A:GKG1201
|
4.5
|
14.9
|
0.6
|
HE
|
A:ARG1123
|
4.6
|
19.7
|
1.0
|
HG22
|
A:VAL1158
|
4.6
|
26.2
|
1.0
|
CZ
|
A:ARG1123
|
4.7
|
20.4
|
1.0
|
HH11
|
A:ARG1155
|
4.8
|
30.4
|
0.5
|
HG2
|
A:ARG1155
|
4.8
|
21.0
|
0.5
|
NE
|
A:ARG1123
|
4.8
|
16.4
|
1.0
|
HG2
|
A:ARG1155
|
4.8
|
20.3
|
0.5
|
S
|
A:SO41205
|
4.9
|
35.4
|
0.9
|
O2
|
A:SO41205
|
4.9
|
25.5
|
0.9
|
N41
|
A:GKG1201
|
5.0
|
10.7
|
0.4
|
|
Fluorine binding site 2 out
of 6 in 6diw
Go back to
Fluorine Binding Sites List in 6diw
Fluorine binding site 2 out
of 6 in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:26.2
occ:0.44
|
F53
|
A:GKG1201
|
0.0
|
26.2
|
0.4
|
H292
|
A:GKG1201
|
0.4
|
12.8
|
0.6
|
C29
|
A:GKG1201
|
1.3
|
10.6
|
0.6
|
C28
|
A:GKG1201
|
1.4
|
22.6
|
0.4
|
H293
|
A:GKG1201
|
1.8
|
12.8
|
0.6
|
H291
|
A:GKG1201
|
2.0
|
12.8
|
0.6
|
C26
|
A:GKG1201
|
2.3
|
8.8
|
0.6
|
F55
|
A:GKG1201
|
2.3
|
25.3
|
0.4
|
F54
|
A:GKG1201
|
2.3
|
25.1
|
0.4
|
C26
|
A:GKG1201
|
2.3
|
17.2
|
0.4
|
F55
|
A:GKG1201
|
2.4
|
51.9
|
0.6
|
H292
|
A:GKG1201
|
2.4
|
18.7
|
0.4
|
C28
|
A:GKG1201
|
2.5
|
10.4
|
0.6
|
H293
|
A:GKG1201
|
2.5
|
18.7
|
0.4
|
C29
|
A:GKG1201
|
2.5
|
15.6
|
0.4
|
F53
|
A:GKG1201
|
2.6
|
24.1
|
0.6
|
H273
|
A:GKG1201
|
2.7
|
14.9
|
0.6
|
HH22
|
A:ARG1123
|
2.8
|
24.4
|
1.0
|
C27
|
A:GKG1201
|
3.0
|
12.4
|
0.6
|
NH2
|
A:ARG1123
|
3.0
|
20.3
|
1.0
|
H273
|
A:GKG1201
|
3.2
|
19.7
|
0.4
|
HH21
|
A:ARG1123
|
3.2
|
24.4
|
1.0
|
O50
|
A:GKG1201
|
3.3
|
13.0
|
0.4
|
C27
|
A:GKG1201
|
3.3
|
16.4
|
0.4
|
O50
|
A:GKG1201
|
3.4
|
12.6
|
0.6
|
H291
|
A:GKG1201
|
3.5
|
18.7
|
0.4
|
H271
|
A:GKG1201
|
3.5
|
14.9
|
0.6
|
CZ
|
A:ARG1123
|
3.7
|
20.4
|
1.0
|
H272
|
A:GKG1201
|
3.8
|
14.9
|
0.6
|
O
|
A:HOH1480
|
3.8
|
43.5
|
1.0
|
H272
|
A:GKG1201
|
3.8
|
19.7
|
0.4
|
HG22
|
A:VAL1158
|
3.8
|
26.2
|
1.0
|
HH12
|
A:ARG1123
|
3.8
|
24.5
|
1.0
|
F54
|
A:GKG1201
|
3.8
|
46.3
|
0.6
|
NH1
|
A:ARG1123
|
4.0
|
20.4
|
1.0
|
H271
|
A:GKG1201
|
4.1
|
19.7
|
0.4
|
O
|
A:HOH1554
|
4.2
|
31.1
|
1.0
|
O3
|
A:SO41205
|
4.3
|
42.2
|
0.9
|
O
|
A:HOH1319
|
4.5
|
50.4
|
1.0
|
NE
|
A:ARG1123
|
4.6
|
16.4
|
1.0
|
C25
|
A:GKG1201
|
4.6
|
14.6
|
0.4
|
HE
|
A:ARG1123
|
4.7
|
19.7
|
1.0
|
C25
|
A:GKG1201
|
4.7
|
12.1
|
0.6
|
HH11
|
A:ARG1123
|
4.7
|
24.5
|
1.0
|
CG2
|
A:VAL1158
|
4.8
|
21.8
|
1.0
|
HG21
|
A:VAL1158
|
4.9
|
26.2
|
1.0
|
HG13
|
A:VAL1158
|
5.0
|
26.0
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 6diw
Go back to
Fluorine Binding Sites List in 6diw
Fluorine binding site 3 out
of 6 in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:46.3
occ:0.56
|
F54
|
A:GKG1201
|
0.0
|
46.3
|
0.6
|
C27
|
A:GKG1201
|
0.5
|
16.4
|
0.4
|
H271
|
A:GKG1201
|
0.8
|
19.7
|
0.4
|
H272
|
A:GKG1201
|
0.8
|
19.7
|
0.4
|
H273
|
A:GKG1201
|
1.4
|
19.7
|
0.4
|
C28
|
A:GKG1201
|
1.4
|
10.4
|
0.6
|
C26
|
A:GKG1201
|
1.9
|
17.2
|
0.4
|
F55
|
A:GKG1201
|
2.2
|
51.9
|
0.6
|
F53
|
A:GKG1201
|
2.2
|
24.1
|
0.6
|
H152
|
A:GKG1201
|
2.2
|
20.9
|
0.4
|
H152
|
A:GKG1201
|
2.4
|
22.3
|
0.6
|
C26
|
A:GKG1201
|
2.4
|
8.8
|
0.6
|
O49
|
A:GKG1201
|
2.5
|
12.1
|
0.4
|
O49
|
A:GKG1201
|
2.5
|
13.9
|
0.6
|
O50
|
A:GKG1201
|
2.6
|
13.0
|
0.4
|
H272
|
A:GKG1201
|
2.7
|
14.9
|
0.6
|
H151
|
A:GKG1201
|
2.7
|
22.3
|
0.6
|
C25
|
A:GKG1201
|
2.8
|
14.6
|
0.4
|
O50
|
A:GKG1201
|
2.9
|
12.6
|
0.6
|
C29
|
A:GKG1201
|
2.9
|
15.6
|
0.4
|
C28
|
A:GKG1201
|
2.9
|
22.6
|
0.4
|
H291
|
A:GKG1201
|
2.9
|
18.7
|
0.4
|
C25
|
A:GKG1201
|
2.9
|
12.1
|
0.6
|
F55
|
A:GKG1201
|
2.9
|
25.3
|
0.4
|
C15
|
A:GKG1201
|
3.0
|
18.5
|
0.6
|
C27
|
A:GKG1201
|
3.0
|
12.4
|
0.6
|
C15
|
A:GKG1201
|
3.0
|
17.4
|
0.4
|
H151
|
A:GKG1201
|
3.1
|
20.9
|
0.4
|
H292
|
A:GKG1201
|
3.1
|
18.7
|
0.4
|
O
|
A:HOH1352
|
3.1
|
22.0
|
1.0
|
H153
|
A:GKG1201
|
3.4
|
20.9
|
0.4
|
HB1
|
A:ALA1156
|
3.4
|
12.3
|
1.0
|
H273
|
A:GKG1201
|
3.5
|
14.9
|
0.6
|
H153
|
A:GKG1201
|
3.5
|
22.3
|
0.6
|
HB3
|
A:ALA1156
|
3.6
|
12.3
|
1.0
|
HB2
|
A:ALA1156
|
3.6
|
12.3
|
1.0
|
F54
|
A:GKG1201
|
3.7
|
25.1
|
0.4
|
H293
|
A:GKG1201
|
3.7
|
18.7
|
0.4
|
C29
|
A:GKG1201
|
3.7
|
10.6
|
0.6
|
CB
|
A:ALA1156
|
3.7
|
10.2
|
1.0
|
H271
|
A:GKG1201
|
3.8
|
14.9
|
0.6
|
F53
|
A:GKG1201
|
3.8
|
26.2
|
0.4
|
H292
|
A:GKG1201
|
3.9
|
12.8
|
0.6
|
H293
|
A:GKG1201
|
4.0
|
12.8
|
0.6
|
N41
|
A:GKG1201
|
4.1
|
10.7
|
0.4
|
C16
|
A:GKG1201
|
4.2
|
16.2
|
0.6
|
O44
|
A:GKG1201
|
4.2
|
15.5
|
0.6
|
O44
|
A:GKG1201
|
4.2
|
12.7
|
0.4
|
C16
|
A:GKG1201
|
4.2
|
17.0
|
0.4
|
N41
|
A:GKG1201
|
4.3
|
13.1
|
0.6
|
HH12
|
A:ARG1155
|
4.3
|
30.4
|
0.5
|
H291
|
A:GKG1201
|
4.4
|
12.8
|
0.6
|
NH1
|
A:ARG1155
|
4.4
|
25.3
|
0.5
|
HH11
|
A:ARG1155
|
4.6
|
30.4
|
0.5
|
H411
|
A:GKG1201
|
4.6
|
12.9
|
0.4
|
H082
|
A:GKG1201
|
4.6
|
10.6
|
0.4
|
H082
|
A:GKG1201
|
4.6
|
14.2
|
0.6
|
HH11
|
A:ARG1155
|
4.6
|
30.0
|
0.5
|
C01
|
A:GKG1201
|
4.7
|
11.4
|
0.6
|
C01
|
A:GKG1201
|
4.7
|
11.6
|
0.4
|
H411
|
A:GKG1201
|
4.8
|
15.7
|
0.6
|
CZ
|
A:ARG1155
|
4.8
|
27.3
|
0.5
|
O
|
A:HOH1319
|
4.8
|
50.4
|
1.0
|
C19
|
A:GKG1201
|
5.0
|
10.7
|
0.4
|
C09
|
A:GKG1201
|
5.0
|
12.4
|
0.4
|
H091
|
A:GKG1201
|
5.0
|
14.9
|
0.4
|
|
Fluorine binding site 4 out
of 6 in 6diw
Go back to
Fluorine Binding Sites List in 6diw
Fluorine binding site 4 out
of 6 in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:25.1
occ:0.44
|
F54
|
A:GKG1201
|
0.0
|
25.1
|
0.4
|
H293
|
A:GKG1201
|
0.8
|
12.8
|
0.6
|
C28
|
A:GKG1201
|
1.4
|
22.6
|
0.4
|
C29
|
A:GKG1201
|
1.6
|
10.6
|
0.6
|
F55
|
A:GKG1201
|
2.1
|
25.3
|
0.4
|
H292
|
A:GKG1201
|
2.2
|
12.8
|
0.6
|
C26
|
A:GKG1201
|
2.2
|
8.8
|
0.6
|
F53
|
A:GKG1201
|
2.2
|
24.1
|
0.6
|
F53
|
A:GKG1201
|
2.3
|
26.2
|
0.4
|
H291
|
A:GKG1201
|
2.3
|
12.8
|
0.6
|
C26
|
A:GKG1201
|
2.4
|
17.2
|
0.4
|
O50
|
A:GKG1201
|
2.4
|
12.6
|
0.6
|
O50
|
A:GKG1201
|
2.4
|
13.0
|
0.4
|
HG22
|
A:VAL1158
|
2.5
|
26.2
|
1.0
|
C28
|
A:GKG1201
|
2.6
|
10.4
|
0.6
|
H272
|
A:GKG1201
|
3.3
|
19.7
|
0.4
|
CG2
|
A:VAL1158
|
3.4
|
21.8
|
1.0
|
C27
|
A:GKG1201
|
3.4
|
16.4
|
0.4
|
H293
|
A:GKG1201
|
3.5
|
18.7
|
0.4
|
HG23
|
A:VAL1158
|
3.5
|
26.2
|
1.0
|
C29
|
A:GKG1201
|
3.5
|
15.6
|
0.4
|
F55
|
A:GKG1201
|
3.5
|
51.9
|
0.6
|
HA
|
A:VAL1158
|
3.6
|
17.0
|
1.0
|
HB3
|
A:ALA1156
|
3.7
|
12.3
|
1.0
|
H273
|
A:GKG1201
|
3.7
|
19.7
|
0.4
|
C27
|
A:GKG1201
|
3.7
|
12.4
|
0.6
|
F54
|
A:GKG1201
|
3.7
|
46.3
|
0.6
|
C25
|
A:GKG1201
|
3.7
|
12.1
|
0.6
|
C25
|
A:GKG1201
|
3.7
|
14.6
|
0.4
|
HB1
|
A:ALA1156
|
3.9
|
12.3
|
1.0
|
HG21
|
A:VAL1158
|
3.9
|
26.2
|
1.0
|
H292
|
A:GKG1201
|
3.9
|
18.7
|
0.4
|
H271
|
A:GKG1201
|
4.0
|
14.9
|
0.6
|
H273
|
A:GKG1201
|
4.0
|
14.9
|
0.6
|
O
|
A:ALA1157
|
4.0
|
11.8
|
1.0
|
H411
|
A:GKG1201
|
4.1
|
12.9
|
0.4
|
NH2
|
A:ARG1123
|
4.2
|
20.3
|
1.0
|
CZ
|
A:ARG1123
|
4.2
|
20.4
|
1.0
|
H271
|
A:GKG1201
|
4.2
|
19.7
|
0.4
|
CA
|
A:VAL1158
|
4.2
|
14.2
|
1.0
|
C
|
A:ALA1157
|
4.2
|
14.8
|
1.0
|
CB
|
A:ALA1156
|
4.2
|
10.2
|
1.0
|
H411
|
A:GKG1201
|
4.3
|
15.7
|
0.6
|
H291
|
A:GKG1201
|
4.3
|
18.7
|
0.4
|
CB
|
A:ALA1168
|
4.3
|
30.0
|
1.0
|
HH22
|
A:ARG1123
|
4.3
|
24.4
|
1.0
|
N
|
A:VAL1158
|
4.3
|
14.8
|
1.0
|
H272
|
A:GKG1201
|
4.3
|
14.9
|
0.6
|
CB
|
A:VAL1158
|
4.3
|
14.4
|
1.0
|
HH21
|
A:ARG1123
|
4.4
|
24.4
|
1.0
|
N41
|
A:GKG1201
|
4.4
|
10.7
|
0.4
|
NH1
|
A:ARG1123
|
4.4
|
20.4
|
1.0
|
HG13
|
A:VAL1158
|
4.4
|
26.0
|
1.0
|
N41
|
A:GKG1201
|
4.5
|
13.1
|
0.6
|
HH12
|
A:ARG1123
|
4.5
|
24.5
|
1.0
|
O49
|
A:GKG1201
|
4.5
|
13.9
|
0.6
|
O
|
A:HOH1486
|
4.5
|
26.9
|
1.0
|
NE
|
A:ARG1123
|
4.6
|
16.4
|
1.0
|
O49
|
A:GKG1201
|
4.6
|
12.1
|
0.4
|
HH11
|
A:ARG1123
|
4.7
|
24.5
|
1.0
|
HE
|
A:ARG1123
|
4.7
|
19.7
|
1.0
|
H
|
A:VAL1158
|
4.7
|
17.8
|
1.0
|
O
|
A:HOH1554
|
4.7
|
31.1
|
1.0
|
C
|
A:ALA1156
|
4.8
|
13.3
|
1.0
|
H
|
A:ALA1168
|
4.8
|
11.2
|
1.0
|
O
|
A:ALA1156
|
4.9
|
11.0
|
1.0
|
N
|
A:ALA1157
|
4.9
|
13.5
|
1.0
|
CG1
|
A:VAL1158
|
4.9
|
21.6
|
1.0
|
HB2
|
A:ALA1156
|
4.9
|
12.3
|
1.0
|
O
|
A:HOH1480
|
5.0
|
43.5
|
1.0
|
HD2
|
A:ARG1123
|
5.0
|
21.1
|
1.0
|
|
Fluorine binding site 5 out
of 6 in 6diw
Go back to
Fluorine Binding Sites List in 6diw
Fluorine binding site 5 out
of 6 in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:51.9
occ:0.56
|
F55
|
A:GKG1201
|
0.0
|
51.9
|
0.6
|
H273
|
A:GKG1201
|
1.1
|
19.7
|
0.4
|
C28
|
A:GKG1201
|
1.4
|
10.4
|
0.6
|
H292
|
A:GKG1201
|
1.7
|
18.7
|
0.4
|
C27
|
A:GKG1201
|
1.7
|
16.4
|
0.4
|
C26
|
A:GKG1201
|
1.9
|
17.2
|
0.4
|
C29
|
A:GKG1201
|
2.1
|
15.6
|
0.4
|
F54
|
A:GKG1201
|
2.2
|
46.3
|
0.6
|
F53
|
A:GKG1201
|
2.2
|
24.1
|
0.6
|
C28
|
A:GKG1201
|
2.2
|
22.6
|
0.4
|
H271
|
A:GKG1201
|
2.2
|
19.7
|
0.4
|
C26
|
A:GKG1201
|
2.3
|
8.8
|
0.6
|
F53
|
A:GKG1201
|
2.4
|
26.2
|
0.4
|
F55
|
A:GKG1201
|
2.4
|
25.3
|
0.4
|
H273
|
A:GKG1201
|
2.4
|
14.9
|
0.6
|
H272
|
A:GKG1201
|
2.5
|
19.7
|
0.4
|
H292
|
A:GKG1201
|
2.6
|
12.8
|
0.6
|
H291
|
A:GKG1201
|
2.7
|
18.7
|
0.4
|
C27
|
A:GKG1201
|
2.7
|
12.4
|
0.6
|
H272
|
A:GKG1201
|
2.8
|
14.9
|
0.6
|
H293
|
A:GKG1201
|
2.9
|
18.7
|
0.4
|
C29
|
A:GKG1201
|
2.9
|
10.6
|
0.6
|
O50
|
A:GKG1201
|
3.3
|
13.0
|
0.4
|
O
|
A:HOH1319
|
3.3
|
50.4
|
1.0
|
H293
|
A:GKG1201
|
3.5
|
12.8
|
0.6
|
F54
|
A:GKG1201
|
3.5
|
25.1
|
0.4
|
O50
|
A:GKG1201
|
3.6
|
12.6
|
0.6
|
H271
|
A:GKG1201
|
3.6
|
14.9
|
0.6
|
H291
|
A:GKG1201
|
3.7
|
12.8
|
0.6
|
HH12
|
A:ARG1155
|
4.0
|
30.4
|
0.5
|
H151
|
A:GKG1201
|
4.1
|
22.3
|
0.6
|
O49
|
A:GKG1201
|
4.1
|
12.1
|
0.4
|
O49
|
A:GKG1201
|
4.1
|
13.9
|
0.6
|
H152
|
A:GKG1201
|
4.1
|
20.9
|
0.4
|
C25
|
A:GKG1201
|
4.2
|
14.6
|
0.4
|
HH21
|
A:ARG1123
|
4.2
|
24.4
|
1.0
|
O
|
A:HOH1352
|
4.2
|
22.0
|
1.0
|
C25
|
A:GKG1201
|
4.3
|
12.1
|
0.6
|
H151
|
A:GKG1201
|
4.4
|
20.9
|
0.4
|
HH22
|
A:ARG1123
|
4.4
|
24.4
|
1.0
|
H152
|
A:GKG1201
|
4.4
|
22.3
|
0.6
|
O3
|
A:SO41205
|
4.5
|
42.2
|
0.9
|
NH2
|
A:ARG1123
|
4.5
|
20.3
|
1.0
|
NH1
|
A:ARG1155
|
4.5
|
25.3
|
0.5
|
C15
|
A:GKG1201
|
4.7
|
18.5
|
0.6
|
C15
|
A:GKG1201
|
4.7
|
17.4
|
0.4
|
HH11
|
A:ARG1155
|
4.8
|
30.4
|
0.5
|
HH22
|
A:ARG1155
|
4.8
|
33.8
|
0.5
|
O4
|
A:SO41205
|
4.8
|
46.4
|
0.9
|
HH12
|
A:ARG1155
|
4.9
|
30.0
|
0.5
|
HB3
|
A:ALA1156
|
4.9
|
12.3
|
1.0
|
|
Fluorine binding site 6 out
of 6 in 6diw
Go back to
Fluorine Binding Sites List in 6diw
Fluorine binding site 6 out
of 6 in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with P4-1 (Aj-71) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:25.3
occ:0.44
|
F55
|
A:GKG1201
|
0.0
|
25.3
|
0.4
|
F53
|
A:GKG1201
|
0.8
|
24.1
|
0.6
|
C28
|
A:GKG1201
|
1.4
|
22.6
|
0.4
|
C28
|
A:GKG1201
|
1.9
|
10.4
|
0.6
|
F54
|
A:GKG1201
|
2.1
|
25.1
|
0.4
|
F53
|
A:GKG1201
|
2.3
|
26.2
|
0.4
|
H273
|
A:GKG1201
|
2.3
|
19.7
|
0.4
|
F55
|
A:GKG1201
|
2.4
|
51.9
|
0.6
|
C26
|
A:GKG1201
|
2.5
|
17.2
|
0.4
|
H272
|
A:GKG1201
|
2.5
|
19.7
|
0.4
|
H293
|
A:GKG1201
|
2.5
|
12.8
|
0.6
|
H292
|
A:GKG1201
|
2.5
|
12.8
|
0.6
|
C27
|
A:GKG1201
|
2.5
|
16.4
|
0.4
|
C29
|
A:GKG1201
|
2.7
|
10.6
|
0.6
|
C26
|
A:GKG1201
|
2.7
|
8.8
|
0.6
|
F54
|
A:GKG1201
|
2.9
|
46.3
|
0.6
|
HH21
|
A:ARG1123
|
3.2
|
24.4
|
1.0
|
O50
|
A:GKG1201
|
3.4
|
13.0
|
0.4
|
HB3
|
A:ALA1156
|
3.5
|
12.3
|
1.0
|
NH2
|
A:ARG1123
|
3.5
|
20.3
|
1.0
|
H271
|
A:GKG1201
|
3.5
|
19.7
|
0.4
|
O50
|
A:GKG1201
|
3.5
|
12.6
|
0.6
|
H292
|
A:GKG1201
|
3.6
|
18.7
|
0.4
|
HH22
|
A:ARG1155
|
3.6
|
33.8
|
0.5
|
C29
|
A:GKG1201
|
3.6
|
15.6
|
0.4
|
H291
|
A:GKG1201
|
3.7
|
12.8
|
0.6
|
CB
|
A:ALA1168
|
3.7
|
30.0
|
1.0
|
HH22
|
A:ARG1123
|
3.8
|
24.4
|
1.0
|
O3
|
A:SO41205
|
3.8
|
42.2
|
0.9
|
HE
|
A:ARG1123
|
3.9
|
19.7
|
1.0
|
CZ
|
A:ARG1123
|
3.9
|
20.4
|
1.0
|
HH12
|
A:ARG1155
|
3.9
|
30.0
|
0.5
|
O
|
A:HOH1319
|
4.0
|
50.4
|
1.0
|
H293
|
A:GKG1201
|
4.0
|
18.7
|
0.4
|
C27
|
A:GKG1201
|
4.0
|
12.4
|
0.6
|
HH12
|
A:ARG1155
|
4.0
|
30.4
|
0.5
|
NH2
|
A:ARG1155
|
4.0
|
28.1
|
0.5
|
H273
|
A:GKG1201
|
4.1
|
14.9
|
0.6
|
NE
|
A:ARG1123
|
4.1
|
16.4
|
1.0
|
O4
|
A:SO41205
|
4.2
|
46.4
|
0.9
|
HG22
|
A:VAL1158
|
4.2
|
26.2
|
1.0
|
HB1
|
A:ALA1156
|
4.2
|
12.3
|
1.0
|
CB
|
A:ALA1156
|
4.2
|
10.2
|
1.0
|
NH1
|
A:ARG1155
|
4.3
|
25.0
|
0.5
|
H291
|
A:GKG1201
|
4.3
|
18.7
|
0.4
|
HH11
|
A:ARG1155
|
4.3
|
30.0
|
0.5
|
S
|
A:SO41205
|
4.4
|
35.4
|
0.9
|
H272
|
A:GKG1201
|
4.4
|
14.9
|
0.6
|
O2
|
A:SO41205
|
4.4
|
25.5
|
0.9
|
HH21
|
A:ARG1155
|
4.5
|
33.8
|
0.5
|
H151
|
A:GKG1201
|
4.5
|
22.3
|
0.6
|
C25
|
A:GKG1201
|
4.5
|
14.6
|
0.4
|
NH1
|
A:ARG1155
|
4.5
|
25.3
|
0.5
|
C25
|
A:GKG1201
|
4.5
|
12.1
|
0.6
|
H152
|
A:GKG1201
|
4.5
|
20.9
|
0.4
|
CZ
|
A:ARG1155
|
4.6
|
27.3
|
0.5
|
H152
|
A:GKG1201
|
4.6
|
22.3
|
0.6
|
HB2
|
A:ALA1156
|
4.6
|
12.3
|
1.0
|
H151
|
A:GKG1201
|
4.6
|
20.9
|
0.4
|
NH1
|
A:ARG1123
|
4.7
|
20.4
|
1.0
|
H271
|
A:GKG1201
|
4.7
|
14.9
|
0.6
|
O49
|
A:GKG1201
|
4.8
|
13.9
|
0.6
|
O49
|
A:GKG1201
|
4.9
|
12.1
|
0.4
|
C15
|
A:GKG1201
|
4.9
|
18.5
|
0.6
|
HH12
|
A:ARG1123
|
4.9
|
24.5
|
1.0
|
H153
|
A:GKG1201
|
4.9
|
22.3
|
0.6
|
C15
|
A:GKG1201
|
4.9
|
17.4
|
0.4
|
H153
|
A:GKG1201
|
5.0
|
20.9
|
0.4
|
|
Reference:
A.N.Matthew,
C.A.Schiffer.
Design of Hepatitis C NS3/4A Protease Inhibitors Leveraging Untapped Regions of the Substrate Envelope To Be Published.
Page generated: Thu Aug 1 18:56:26 2024
|