Fluorine in PDB 6djq: VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-

The structure of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-, PDB code: 6djq was solved by N.V.Varlakhanova, T.M.Brady, B.A.Tornabene, C.J.Hosford, J.S.Chappie, M.G.J.Ford, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.60 / 3.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	69.060, 121.220, 104.560, 90.00, 90.60, 90.00
R / Rfree (%)	22.2 / 27.9

The structure of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Aluminium	(Al)	4 atoms
Sodium	(Na)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Fluorine atom in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- (pdb code 6djq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-, PDB code: 6djq:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:33.2 occ:1.00 F1 A:ALF1002 0.0 33.2 1.0 H A:VAL76 1.8 27.5 1.0 AL A:ALF1002 1.8 27.5 1.0 H A:THR77 2.2 25.4 1.0 F3 A:ALF1002 2.5 29.4 1.0 O3B A:GDP1001 2.5 24.9 1.0 HB A:VAL76 2.5 26.5 1.0 F4 A:ALF1002 2.5 26.7 1.0 N A:VAL76 2.6 23.1 1.0 NA A:NA1004 2.7 31.8 1.0 O A:HOH1106 2.7 31.3 1.0 HG23 A:VAL76 2.8 26.0 1.0 N A:THR77 3.0 21.4 1.0 CB A:VAL76 3.1 22.3 1.0 CA A:VAL76 3.2 23.2 1.0 O A:HOH1105 3.2 33.8 1.0 HA A:ILE75 3.3 32.0 1.0 CG2 A:VAL76 3.4 21.8 1.0 C A:VAL76 3.5 22.1 1.0 F2 A:ALF1002 3.6 29.2 1.0 O A:GLY74 3.7 29.2 1.0 MG A:MG1003 3.7 27.6 1.0 C A:ILE75 3.7 26.3 1.0 PB A:GDP1001 3.8 21.7 1.0 HB A:THR77 3.9 27.0 1.0 CA A:ILE75 4.0 26.8 1.0 O1B A:GDP1001 4.0 23.6 1.0 OG1 A:THR77 4.0 25.1 1.0 HG22 A:VAL76 4.0 26.0 1.0 HG21 A:VAL76 4.0 26.0 1.0 HA A:VAL76 4.1 27.6 1.0 CA A:THR77 4.1 21.4 1.0 CB A:THR77 4.2 22.6 1.0 H A:SER53 4.2 27.5 1.0 HG13 A:ILE75 4.2 24.0 1.0 O A:GLY72 4.3 41.2 1.0 O A:THR77 4.4 23.5 1.0 CG1 A:VAL76 4.5 27.1 1.0 O2A A:GDP1001 4.5 19.1 1.0 HA A:SER53 4.5 24.8 1.0 HG3 A:GLN52 4.6 39.0 1.0 C A:GLY74 4.6 20.8 1.0 HG12 A:VAL76 4.6 32.4 1.0 O3A A:GDP1001 4.7 21.0 1.0 HG12 A:ILE75 4.7 24.0 1.0 C A:THR77 4.7 20.7 1.0 O A:VAL76 4.8 19.7 1.0 HG11 A:VAL76 4.8 32.4 1.0 N A:ILE75 4.8 27.5 1.0 O A:ILE75 4.8 29.3 1.0 O2B A:GDP1001 4.8 20.6 1.0 CG1 A:ILE75 4.8 20.2 1.0 H A:GLY173 4.9 68.5 1.0 HA A:THR77 4.9 25.5 1.0 O A:HOH1101 4.9 2.1 1.0 OG A:SER53 5.0 21.4 1.0 N A:SER53 5.0 23.1 1.0 H A:GLY72 5.0 61.3 1.0

Fluorine binding site 2 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:29.2 occ:1.00 F2 A:ALF1002 0.0 29.2 1.0 AL A:ALF1002 1.8 27.5 1.0 HZ1 A:LYS56 1.9 42.2 1.0 H A:GLY173 2.3 68.5 1.0 F3 A:ALF1002 2.5 29.4 1.0 O A:HOH1106 2.6 31.3 1.0 F4 A:ALF1002 2.6 26.7 1.0 NZ A:LYS56 2.7 35.3 1.0 HA3 A:GLY173 2.7 73.2 1.0 O3B A:GDP1001 2.7 24.9 1.0 N A:GLY173 2.8 57.2 1.0 HZ3 A:LYS56 2.8 42.2 1.0 H A:SER53 2.8 27.5 1.0 O2B A:GDP1001 2.9 20.6 1.0 HA A:GLN52 3.1 43.2 1.0 CA A:GLY173 3.2 61.1 1.0 PB A:GDP1001 3.2 21.7 1.0 HE2 A:LYS56 3.3 42.4 1.0 HZ2 A:LYS56 3.3 42.2 1.0 CE A:LYS56 3.4 35.5 1.0 HA A:PRO172 3.5 39.2 1.0 O A:HOH1101 3.5 2.1 1.0 HE3 A:LYS56 3.6 42.4 1.0 N A:SER53 3.6 23.1 1.0 F1 A:ALF1002 3.6 33.2 1.0 HA2 A:GLY173 3.6 73.2 1.0 C A:PRO172 3.7 41.0 1.0 O1B A:GDP1001 3.8 23.6 1.0 HG3 A:GLN52 3.9 39.0 1.0 CA A:GLN52 4.0 36.2 1.0 O A:HOH1104 4.0 28.5 1.0 CA A:PRO172 4.1 32.9 1.0 HB A:THR77 4.1 27.0 1.0 O A:LEU171 4.2 15.1 1.0 MG A:MG1003 4.2 27.6 1.0 O A:SER51 4.2 59.5 1.0 HA A:SER53 4.3 24.8 1.0 C A:GLN52 4.3 38.5 1.0 H A:SER54 4.4 17.1 1.0 C A:GLY173 4.5 61.7 1.0 HB2 A:LYS56 4.5 48.9 1.0 CA A:SER53 4.6 20.8 1.0 NA A:NA1004 4.6 31.8 1.0 O A:PRO172 4.6 33.6 1.0 CG A:GLN52 4.6 32.7 1.0 O3A A:GDP1001 4.7 21.0 1.0 H A:THR77 4.7 25.4 1.0 HG2 A:GLN52 4.7 39.0 1.0 CB A:GLN52 4.8 34.6 1.0 O A:GLY173 4.8 66.3 1.0 HG A:SER54 4.8 16.9 1.0 N A:GLN52 4.8 39.1 1.0 HG3 A:LYS56 4.8 45.0 1.0 CD A:LYS56 4.9 34.3 1.0 C A:SER51 4.9 55.2 1.0 HB2 A:GLN52 4.9 41.3 1.0 H A:VAL76 4.9 27.5 1.0 HB3 A:PRO172 5.0 34.2 1.0 CB A:THR77 5.0 22.6 1.0 H A:LYS56 5.0 51.2 1.0 HG13 A:ILE75 5.0 24.0 1.0 O A:THR77 5.0 23.5 1.0

Fluorine binding site 3 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:29.4 occ:1.00 F3 A:ALF1002 0.0 29.4 1.0 AL A:ALF1002 1.8 27.5 1.0 H A:SER53 2.1 27.5 1.0 HG3 A:GLN52 2.3 39.0 1.0 O3B A:GDP1001 2.4 24.9 1.0 NA A:NA1004 2.5 31.8 1.0 F1 A:ALF1002 2.5 33.2 1.0 F2 A:ALF1002 2.5 29.2 1.0 O A:HOH1106 2.6 31.3 1.0 N A:SER53 2.9 23.1 1.0 HG2 A:GLN52 2.9 39.0 1.0 HA A:ILE75 3.0 32.0 1.0 CG A:GLN52 3.0 32.7 1.0 O A:GLY74 3.2 29.2 1.0 HA A:GLN52 3.2 43.2 1.0 H A:VAL76 3.3 27.5 1.0 HA A:SER53 3.3 24.8 1.0 F4 A:ALF1002 3.6 26.7 1.0 O A:HOH1104 3.6 28.5 1.0 CA A:SER53 3.6 20.8 1.0 OG A:SER53 3.7 21.4 1.0 H A:GLY173 3.7 68.5 1.0 C A:GLN52 3.8 38.5 1.0 CA A:GLN52 3.8 36.2 1.0 HG13 A:ILE75 3.8 24.0 1.0 PB A:GDP1001 3.8 21.7 1.0 CA A:ILE75 3.9 26.8 1.0 CB A:GLN52 4.0 34.6 1.0 N A:VAL76 4.1 23.1 1.0 CD A:GLN52 4.1 28.6 1.0 O2B A:GDP1001 4.1 20.6 1.0 HZ1 A:LYS56 4.2 42.2 1.0 HA3 A:GLY173 4.2 73.2 1.0 C A:GLY74 4.2 20.8 1.0 CB A:SER53 4.2 24.0 1.0 HB2 A:GLN52 4.4 41.3 1.0 H A:THR77 4.4 25.4 1.0 HG23 A:VAL76 4.4 26.0 1.0 N A:GLY173 4.5 57.2 1.0 N A:ILE75 4.5 27.5 1.0 HB2 A:SER53 4.5 28.5 1.0 C A:ILE75 4.6 26.3 1.0 HE21 A:GLN52 4.7 36.4 1.0 CG1 A:ILE75 4.7 20.2 1.0 OE1 A:GLN52 4.7 25.5 1.0 HB3 A:GLN52 4.7 41.3 1.0 O1B A:GDP1001 4.7 23.6 1.0 NE2 A:GLN52 4.8 30.5 1.0 O3A A:GDP1001 4.8 21.0 1.0 CB A:ILE75 4.8 25.4 1.0 CA A:GLY173 4.8 61.1 1.0 HZ3 A:LYS56 4.8 42.2 1.0 HB A:VAL76 4.9 26.5 1.0 H A:SER54 4.9 17.1 1.0 O A:GLN52 4.9 45.2 1.0 HB A:ILE75 4.9 30.3 1.0 NZ A:LYS56 4.9 35.3 1.0 C A:SER53 5.0 15.7 1.0

Fluorine binding site 4 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:26.7 occ:1.00 F4 A:ALF1002 0.0 26.7 1.0 AL A:ALF1002 1.8 27.5 1.0 MG A:MG1003 1.9 27.6 1.0 HB A:THR77 2.3 27.0 1.0 O A:HOH1101 2.4 2.1 1.0 F1 A:ALF1002 2.5 33.2 1.0 O1B A:GDP1001 2.5 23.6 1.0 OG1 A:THR77 2.6 25.1 1.0 F2 A:ALF1002 2.6 29.2 1.0 O3B A:GDP1001 2.6 24.9 1.0 H A:THR77 2.7 25.4 1.0 O A:HOH1106 2.8 31.3 1.0 CB A:THR77 2.9 22.6 1.0 O A:HOH1105 3.0 33.8 1.0 PB A:GDP1001 3.0 21.7 1.0 N A:THR77 3.4 21.4 1.0 HA A:PRO172 3.5 39.2 1.0 F3 A:ALF1002 3.6 29.4 1.0 CA A:THR77 3.7 21.4 1.0 O2B A:GDP1001 3.7 20.6 1.0 OG A:SER57 3.9 32.5 1.0 HB A:VAL76 4.0 26.5 1.0 O A:LEU171 4.0 15.1 1.0 H A:GLY173 4.0 68.5 1.0 H A:VAL76 4.0 27.5 1.0 HE2 A:LYS56 4.0 42.4 1.0 HZ1 A:LYS56 4.1 42.2 1.0 HG21 A:THR77 4.1 26.0 1.0 CG2 A:THR77 4.1 21.9 1.0 O A:THR77 4.1 23.5 1.0 HZ3 A:LYS56 4.4 42.2 1.0 C A:THR77 4.4 20.7 1.0 CA A:PRO172 4.4 32.9 1.0 O3A A:GDP1001 4.5 21.0 1.0 HA A:THR77 4.5 25.5 1.0 H A:SER57 4.5 42.9 1.0 HB2 A:LYS56 4.5 48.9 1.0 N A:GLY173 4.5 57.2 1.0 NZ A:LYS56 4.5 35.3 1.0 HG22 A:THR77 4.6 26.0 1.0 C A:VAL76 4.6 22.1 1.0 H A:SER53 4.7 27.5 1.0 NA A:NA1004 4.7 31.8 1.0 CE A:LYS56 4.7 35.5 1.0 HG23 A:THR77 4.7 26.0 1.0 N A:VAL76 4.8 23.1 1.0 CB A:VAL76 4.8 22.3 1.0 HB2 A:SER57 4.9 38.0 1.0 O2A A:GDP1001 4.9 19.1 1.0 C A:LEU171 4.9 15.2 1.0 C A:PRO172 4.9 41.0 1.0 CA A:VAL76 5.0 23.2 1.0

Fluorine binding site 5 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:37.0 occ:1.00 F1 B:ALF1002 0.0 37.0 1.0 AL B:ALF1002 1.8 25.7 1.0 H B:VAL76 1.9 71.5 1.0 H B:THR77 2.2 55.7 1.0 F3 B:ALF1002 2.5 29.8 1.0 F4 B:ALF1002 2.5 34.5 1.0 O1B B:GDP1001 2.5 26.8 1.0 NA B:NA1004 2.7 25.1 1.0 N B:VAL76 2.7 59.7 1.0 HB B:VAL76 2.8 72.9 1.0 O B:HOH1104 2.8 28.6 1.0 N B:THR77 3.0 46.6 1.0 HG23 B:VAL76 3.1 74.1 1.0 HA B:ILE75 3.2 39.5 1.0 CB B:VAL76 3.3 60.9 1.0 CA B:VAL76 3.3 60.3 1.0 O B:GLY74 3.6 32.5 1.0 F2 B:ALF1002 3.6 27.6 1.0 C B:VAL76 3.6 55.0 1.0 MG B:MG1003 3.7 27.8 1.0 CG2 B:VAL76 3.7 62.0 1.0 HB B:THR77 3.7 40.0 1.0 C B:ILE75 3.8 39.2 1.0 PB B:GDP1001 3.8 35.2 1.0 O3B B:GDP1001 3.9 37.7 1.0 CA B:ILE75 3.9 33.1 1.0 OG1 B:THR77 4.0 32.2 1.0 CA B:THR77 4.1 43.5 1.0 HG13 B:ILE75 4.1 39.2 1.0 CB B:THR77 4.1 33.5 1.0 HG21 B:VAL76 4.2 74.1 1.0 H B:SER53 4.2 34.1 1.0 O B:THR77 4.3 51.0 1.0 HA B:VAL76 4.3 72.2 1.0 O B:GLY72 4.3 43.5 1.0 HG22 B:VAL76 4.4 74.1 1.0 O1A B:GDP1001 4.4 39.2 1.0 HG3 B:GLN52 4.6 58.3 1.0 HA B:SER53 4.6 31.5 1.0 C B:GLY74 4.6 33.0 1.0 C B:THR77 4.6 46.5 1.0 O3A B:GDP1001 4.7 38.2 1.0 HG12 B:ILE75 4.7 39.2 1.0 CG1 B:VAL76 4.7 64.7 1.0 N B:ILE75 4.8 33.3 1.0 CG1 B:ILE75 4.8 32.9 1.0 O2B B:GDP1001 4.8 29.6 1.0 HA B:THR77 4.9 52.0 1.0 O B:VAL76 4.9 58.8 1.0 HG12 B:VAL76 4.9 77.4 1.0 O B:ILE75 4.9 43.3 1.0 O B:HOH1102 5.0 18.0 1.0 N B:SER53 5.0 28.6 1.0

Fluorine binding site 6 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:27.6 occ:1.00 F2 B:ALF1002 0.0 27.6 1.0 AL B:ALF1002 1.8 25.7 1.0 HZ1 B:LYS56 1.9 66.2 1.0 O B:HOH1104 2.2 28.6 1.0 H B:GLY173 2.5 93.7 1.0 F3 B:ALF1002 2.5 29.8 1.0 F4 B:ALF1002 2.6 34.5 1.0 H B:SER53 2.6 34.1 1.0 O1B B:GDP1001 2.6 26.8 1.0 NZ B:LYS56 2.7 55.3 1.0 HA3 B:GLY173 2.7 95.8 1.0 HA B:GLN52 2.8 49.9 1.0 HZ3 B:LYS56 2.8 66.2 1.0 O2B B:GDP1001 3.0 29.6 1.0 N B:GLY173 3.0 78.3 1.0 HZ2 B:LYS56 3.2 66.2 1.0 PB B:GDP1001 3.3 35.2 1.0 CA B:GLY173 3.3 80.0 1.0 N B:SER53 3.4 28.6 1.0 HE2 B:LYS56 3.6 59.6 1.0 HG3 B:GLN52 3.6 58.3 1.0 F1 B:ALF1002 3.6 37.0 1.0 CE B:LYS56 3.7 49.9 1.0 CA B:GLN52 3.7 41.8 1.0 HA2 B:GLY173 3.7 95.8 1.0 HA B:PRO172 3.7 65.0 1.0 O B:HOH1102 3.8 18.0 1.0 O3B B:GDP1001 3.8 37.7 1.0 HE3 B:LYS56 3.8 59.6 1.0 C B:PRO172 3.9 62.7 1.0 C B:GLN52 4.1 38.6 1.0 O B:SER51 4.1 54.4 1.0 HA B:SER53 4.2 31.5 1.0 MG B:MG1003 4.2 27.8 1.0 HB B:THR77 4.3 40.0 1.0 H B:SER54 4.3 31.5 1.0 CG B:GLN52 4.3 48.7 1.0 CA B:PRO172 4.3 54.4 1.0 O B:LEU171 4.4 51.0 1.0 CA B:SER53 4.4 26.4 1.0 HG2 B:GLN52 4.5 58.3 1.0 CB B:GLN52 4.5 45.9 1.0 C B:GLY173 4.6 76.8 1.0 NA B:NA1004 4.6 25.1 1.0 N B:GLN52 4.6 42.3 1.0 HB2 B:GLN52 4.7 54.9 1.0 O3A B:GDP1001 4.7 38.2 1.0 HG B:SER54 4.7 31.7 1.0 HB2 B:LYS56 4.7 58.2 1.0 C B:SER51 4.8 53.0 1.0 O B:PRO172 4.8 59.4 1.0 HG3 B:LYS56 4.9 55.2 1.0 O B:GLY173 4.9 83.0 1.0 H B:THR77 4.9 55.7 1.0 N B:SER54 5.0 26.4 1.0

Fluorine binding site 7 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:29.8 occ:1.00 F3 B:ALF1002 0.0 29.8 1.0 AL B:ALF1002 1.8 25.7 1.0 H B:SER53 2.2 34.1 1.0 HG3 B:GLN52 2.3 58.3 1.0 O B:HOH1104 2.3 28.6 1.0 O1B B:GDP1001 2.4 26.8 1.0 NA B:NA1004 2.5 25.1 1.0 F1 B:ALF1002 2.5 37.0 1.0 F2 B:ALF1002 2.5 27.6 1.0 HG2 B:GLN52 2.8 58.3 1.0 N B:SER53 2.9 28.6 1.0 CG B:GLN52 3.0 48.7 1.0 HA B:ILE75 3.0 39.5 1.0 O B:GLY74 3.2 32.5 1.0 HA B:GLN52 3.3 49.9 1.0 HA B:SER53 3.4 31.5 1.0 H B:VAL76 3.4 71.5 1.0 F4 B:ALF1002 3.6 34.5 1.0 CA B:SER53 3.6 26.4 1.0 OG B:SER53 3.7 29.4 1.0 C B:GLN52 3.8 38.6 1.0 CA B:GLN52 3.8 41.8 1.0 PB B:GDP1001 3.9 35.2 1.0 HG13 B:ILE75 3.9 39.2 1.0 CB B:GLN52 3.9 45.9 1.0 CA B:ILE75 4.0 33.1 1.0 H B:GLY173 4.0 93.7 1.0 CD B:GLN52 4.0 50.1 1.0 C B:GLY74 4.1 33.0 1.0 CB B:SER53 4.2 28.4 1.0 N B:VAL76 4.2 59.7 1.0 O2B B:GDP1001 4.3 29.6 1.0 HZ1 B:LYS56 4.3 66.2 1.0 HB2 B:GLN52 4.4 54.9 1.0 HA3 B:GLY173 4.4 95.8 1.0 N B:ILE75 4.5 33.3 1.0 H B:THR77 4.5 55.7 1.0 HB2 B:SER53 4.5 33.8 1.0 HE21 B:GLN52 4.6 61.5 1.0 HG23 B:VAL76 4.6 74.1 1.0 C B:ILE75 4.7 39.2 1.0 HB3 B:GLN52 4.7 54.9 1.0 OE1 B:GLN52 4.7 48.7 1.0 NE2 B:GLN52 4.7 51.4 1.0 O3B B:GDP1001 4.7 37.7 1.0 CG1 B:ILE75 4.7 32.9 1.0 OD2 A:ASP214 4.7 39.3 1.0 N B:GLY173 4.7 78.3 1.0 O3A B:GDP1001 4.8 38.2 1.0 CB B:ILE75 4.8 33.2 1.0 HB B:ILE75 4.8 39.6 1.0 O B:GLN52 4.9 40.9 1.0 HZ3 B:LYS56 5.0 66.2 1.0 H B:SER54 5.0 31.5 1.0

Fluorine binding site 8 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:34.5 occ:1.00 F4 B:ALF1002 0.0 34.5 1.0 AL B:ALF1002 1.8 25.7 1.0 MG B:MG1003 1.9 27.8 1.0 HB B:THR77 2.3 40.0 1.0 O B:HOH1102 2.5 18.0 1.0 F1 B:ALF1002 2.5 37.0 1.0 O3B B:GDP1001 2.5 37.7 1.0 F2 B:ALF1002 2.6 27.6 1.0 O1B B:GDP1001 2.7 26.8 1.0 O B:HOH1104 2.7 28.6 1.0 OG1 B:THR77 2.8 32.2 1.0 H B:THR77 2.9 55.7 1.0 CB B:THR77 2.9 33.5 1.0 PB B:GDP1001 3.0 35.2 1.0 F3 B:ALF1002 3.6 29.8 1.0 HA B:PRO172 3.6 65.0 1.0 N B:THR77 3.6 46.6 1.0 O2B B:GDP1001 3.7 29.6 1.0 CA B:THR77 3.8 43.5 1.0 HZ1 B:LYS56 3.8 66.2 1.0 O B:LEU171 3.9 51.0 1.0 OG B:SER57 4.0 37.2 1.0 H B:GLY173 4.1 93.7 1.0 HG21 B:THR77 4.1 37.9 1.0 HE2 B:LYS56 4.1 59.6 1.0 O B:THR77 4.1 51.0 1.0 CG2 B:THR77 4.1 31.8 1.0 H B:VAL76 4.2 71.5 1.0 HZ3 B:LYS56 4.2 66.2 1.0 HB B:VAL76 4.3 72.9 1.0 NZ B:LYS56 4.4 55.3 1.0 C B:THR77 4.5 46.5 1.0 O3A B:GDP1001 4.5 38.2 1.0 H B:SER53 4.5 34.1 1.0 CA B:PRO172 4.5 54.4 1.0 H B:SER57 4.5 41.7 1.0 N B:GLY173 4.6 78.3 1.0 HB2 B:LYS56 4.6 58.2 1.0 HG22 B:THR77 4.6 37.9 1.0 HA B:THR77 4.6 52.0 1.0 NA B:NA1004 4.7 25.1 1.0 CE B:LYS56 4.7 49.9 1.0 HG23 B:THR77 4.8 37.9 1.0 C B:VAL76 4.8 55.0 1.0 C B:LEU171 4.9 50.3 1.0 O1A B:GDP1001 4.9 39.2 1.0 C B:PRO172 4.9 62.7 1.0 HB2 B:SER57 4.9 42.3 1.0 N B:VAL76 4.9 59.7 1.0

Fluorine binding site 9 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:58.2 occ:1.00 F1 C:ALF1002 0.0 58.2 1.0 H C:VAL76 1.8 56.2 1.0 AL C:ALF1002 1.8 50.9 1.0 H C:THR77 2.4 65.4 1.0 HB C:VAL76 2.4 40.7 1.0 F3 C:ALF1002 2.5 53.6 1.0 F4 C:ALF1002 2.5 49.2 1.0 N C:VAL76 2.6 47.0 1.0 HG23 C:VAL76 2.6 40.8 1.0 NA C:NA1004 2.7 41.9 1.0 O3B C:GDP1001 2.8 48.0 1.0 O C:HOH1102 3.0 49.1 1.0 CB C:VAL76 3.0 34.1 1.0 N C:THR77 3.1 54.6 1.0 CA C:VAL76 3.1 37.2 1.0 CG2 C:VAL76 3.3 34.2 1.0 HA C:ILE75 3.3 88.4 1.0 O C:GLY74 3.4 65.6 1.0 C C:VAL76 3.6 34.7 1.0 F2 C:ALF1002 3.6 48.6 1.0 MG C:MG1003 3.7 48.5 1.0 C C:ILE75 3.7 79.0 1.0 HG21 C:VAL76 3.8 40.8 1.0 O C:GLY72 4.0 47.0 1.0 HG22 C:VAL76 4.0 40.8 1.0 CA C:ILE75 4.0 73.9 1.0 PB C:GDP1001 4.0 45.5 1.0 HA C:VAL76 4.0 44.5 1.0 HB C:THR77 4.1 50.0 1.0 OG1 C:THR77 4.2 35.7 1.0 O1B C:GDP1001 4.2 50.4 1.0 CA C:THR77 4.3 50.7 1.0 HG13 C:ILE75 4.3 92.8 1.0 C C:GLY74 4.4 66.2 1.0 O2A C:GDP1001 4.4 41.2 1.0 CG1 C:VAL76 4.4 34.9 1.0 CB C:THR77 4.4 41.9 1.0 H C:SER53 4.4 61.4 1.0 HG12 C:VAL76 4.6 41.6 1.0 O C:THR77 4.6 33.5 1.0 N C:ILE75 4.7 64.8 1.0 HG3 C:GLN52 4.7 42.3 1.0 HA C:SER53 4.7 66.1 1.0 HG11 C:VAL76 4.7 41.6 1.0 HG C:SER53 4.7 79.6 1.0 O C:ILE75 4.8 85.2 1.0 O3A C:GDP1001 4.8 43.1 1.0 O C:VAL76 4.8 34.7 1.0 C C:THR77 4.9 45.7 1.0 H C:GLY72 4.9 61.1 1.0 H5'' C:GDP1001 5.0 51.8 1.0

Fluorine binding site 10 out of 16 in the VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of VPS1 Gtpase-Bse Fusion Complexed with Gdp.ALF4- within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:48.6 occ:1.00 F2 C:ALF1002 0.0 48.6 1.0 AL C:ALF1002 1.8 50.9 1.0 HZ2 C:LYS56 1.9 73.6 1.0 O C:HOH1102 2.0 49.1 1.0 H C:GLY173 2.4 81.5 1.0 O3B C:GDP1001 2.5 48.0 1.0 H C:SER53 2.5 61.4 1.0 F3 C:ALF1002 2.5 53.6 1.0 F4 C:ALF1002 2.6 49.2 1.0 NZ C:LYS56 2.7 61.5 1.0 HA C:GLN52 2.8 35.9 1.0 HZ1 C:LYS56 2.9 73.6 1.0 HA3 C:GLY173 2.9 83.9 1.0 N C:GLY173 3.0 68.1 1.0 HZ3 C:LYS56 3.1 73.6 1.0 O2B C:GDP1001 3.2 45.3 1.0 PB C:GDP1001 3.3 45.5 1.0 HG3 C:GLN52 3.3 42.3 1.0 N C:SER53 3.4 51.3 1.0 CA C:GLY173 3.5 70.1 1.0 F1 C:ALF1002 3.6 58.2 1.0 HA C:PRO172 3.7 56.7 1.0 CA C:GLN52 3.7 30.1 1.0 HE2 C:LYS56 3.7 71.9 1.0 CE C:LYS56 3.7 60.1 1.0 O1B C:GDP1001 3.9 50.4 1.0 HE3 C:LYS56 3.9 71.9 1.0 O C:HOH1101 4.0 14.8 1.0 C C:PRO172 4.0 48.4 1.0 HA2 C:GLY173 4.0 83.9 1.0 C C:GLN52 4.0 38.0 1.0 HA C:SER53 4.1 66.1 1.0 CG C:GLN52 4.1 35.4 1.0 MG C:MG1003 4.2 48.5 1.0 HG2 C:GLN52 4.2 42.3 1.0 HB C:THR77 4.3 50.0 1.0 O C:SER51 4.3 46.7 1.0 CA C:PRO172 4.3 47.4 1.0 CA C:SER53 4.3 55.3 1.0 H C:SER54 4.4 51.4 1.0 CB C:GLN52 4.4 29.8 1.0 HB2 C:GLN52 4.6 35.6 1.0 NA C:NA1004 4.6 41.9 1.0 C C:GLY173 4.6 67.4 1.0 O C:LEU171 4.7 39.0 1.0 H C:THR77 4.7 65.4 1.0 N C:GLN52 4.7 29.7 1.0 O3A C:GDP1001 4.7 43.1 1.0 O C:GLY173 4.8 70.9 1.0 H C:VAL76 4.8 56.2 1.0 HG C:SER54 4.9 56.7 1.0 HB2 C:LYS56 4.9 74.7 1.0 C C:SER51 4.9 44.9 1.0 HG C:SER53 4.9 79.6 1.0 HB3 C:PRO172 5.0 58.4 1.0 HG3 C:LYS56 5.0 72.1 1.0 HA C:ILE75 5.0 88.4 1.0

N.V.Varlakhanova, F.J.D.Alvarez, T.M.Brady, B.A.Tornabene, C.J.Hosford, J.S.Chappie, P.Zhang, M.G.J.Ford. Structures of the Fungal Dynamin-Related Protein VPS1 Reveal A Unique, Open Helical Architecture. J. Cell Biol. V. 217 3608 2018.
ISSN: ESSN 1540-8140
PubMed: 30087125
DOI: 10.1083/JCB.201712021