Fluorine in PDB 6eb7: Yycf Homologue (SP1227) Receiver Domain Activated By BEF3

Protein crystallography data

The structure of Yycf Homologue (SP1227) Receiver Domain Activated By BEF3, PDB code: 6eb7 was solved by A.Riboldi-Tunnicliffe, N.W.Issacs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.21 / 1.58
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.563, 93.324, 37.456, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 21.6

Other elements in 6eb7:

The structure of Yycf Homologue (SP1227) Receiver Domain Activated By BEF3 also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Yycf Homologue (SP1227) Receiver Domain Activated By BEF3 (pdb code 6eb7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Yycf Homologue (SP1227) Receiver Domain Activated By BEF3, PDB code: 6eb7:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6eb7

Go back to Fluorine Binding Sites List in 6eb7
Fluorine binding site 1 out of 3 in the Yycf Homologue (SP1227) Receiver Domain Activated By BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Yycf Homologue (SP1227) Receiver Domain Activated By BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:24.8
occ:1.00
 F1 A:BEF201 0.0 24.8 1.0
BE A:BEF201 1.5 23.9 1.0
OD1 A:ASP52 2.5 22.7 1.0
F2 A:BEF201 2.5 24.5 1.0
F3 A:BEF201 2.5 25.0 1.0
NZ A:LYS101 2.8 30.8 1.0
O A:HOH368 2.9 42.6 1.0
N A:ALA80 3.0 26.6 1.0
CA A:SER79 3.4 20.9 1.0
CE A:LYS101 3.4 28.4 1.0
OG A:SER79 3.5 24.7 1.0
CG A:ASP52 3.6 24.7 1.0
CD A:LYS101 3.6 31.9 1.0
C A:SER79 3.7 28.0 1.0
CB A:SER79 3.9 22.3 1.0
O A:HOH306 3.9 28.2 1.0
O A:HOH392 3.9 50.2 1.0
CB A:ALA80 3.9 29.1 1.0
CA A:ALA80 4.1 30.2 1.0
OD2 A:ASP52 4.1 23.3 1.0
MN A:MN202 4.2 27.6 1.0
O A:LEU78 4.3 21.5 1.0
O A:HOH349 4.5 50.9 1.0
N A:SER79 4.6 17.9 1.0
CG A:LYS101 4.6 30.4 1.0
CB A:ASP52 4.8 20.4 1.0
C A:LEU78 4.8 19.6 1.0
O A:SER79 4.9 23.3 1.0
N A:LEU53 4.9 22.6 1.0
N A:LYS81 4.9 24.7 1.0
OD2 A:ASP8 5.0 23.7 1.0
N A:MET54 5.0 26.9 1.0

Fluorine binding site 2 out of 3 in 6eb7

Go back to Fluorine Binding Sites List in 6eb7
Fluorine binding site 2 out of 3 in the Yycf Homologue (SP1227) Receiver Domain Activated By BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Yycf Homologue (SP1227) Receiver Domain Activated By BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:24.5
occ:1.00
 F2 A:BEF201 0.0 24.5 1.0
BE A:BEF201 1.6 23.9 1.0
MN A:MN202 2.0 27.6 1.0
OD1 A:ASP52 2.4 22.7 1.0
F3 A:BEF201 2.5 25.0 1.0
F1 A:BEF201 2.5 24.8 1.0
OD2 A:ASP52 2.7 23.3 1.0
CG A:ASP52 2.9 24.7 1.0
O A:HOH306 3.0 28.2 1.0
O A:MET54 3.0 30.4 1.0
CB A:MET54 3.1 30.0 1.0
O A:HOH347 3.3 42.9 1.0
N A:MET54 3.4 26.9 1.0
O A:HOH392 3.4 50.2 1.0
CA A:MET54 3.6 28.7 1.0
O A:HOH368 3.7 42.6 1.0
C A:MET54 3.7 27.8 1.0
CG A:MET54 3.8 39.5 1.0
NZ A:LYS101 4.1 30.8 1.0
OD1 A:ASP9 4.2 24.6 1.0
N A:LEU53 4.3 22.6 1.0
CB A:ASP52 4.4 20.4 1.0
C A:LEU53 4.5 26.0 1.0
SD A:MET54 4.5 46.2 1.0
OE2 A:GLU10 4.7 37.5 1.0
OG A:SER79 4.8 24.7 1.0

Fluorine binding site 3 out of 3 in 6eb7

Go back to Fluorine Binding Sites List in 6eb7
Fluorine binding site 3 out of 3 in the Yycf Homologue (SP1227) Receiver Domain Activated By BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Yycf Homologue (SP1227) Receiver Domain Activated By BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:25.0
occ:1.00
 F3 A:BEF201 0.0 25.0 1.0
BE A:BEF201 1.5 23.9 1.0
F2 A:BEF201 2.5 24.5 1.0
OD1 A:ASP52 2.5 22.7 1.0
F1 A:BEF201 2.5 24.8 1.0
OG A:SER79 2.6 24.7 1.0
N A:MET54 2.8 26.9 1.0
N A:LEU53 3.0 22.6 1.0
CB A:SER79 3.2 22.3 1.0
CG A:ASP52 3.4 24.7 1.0
CA A:LEU53 3.5 24.1 1.0
CB A:LEU53 3.5 25.0 1.0
CG A:MET54 3.6 39.5 1.0
C A:LEU53 3.6 26.0 1.0
CB A:MET54 3.7 30.0 1.0
CA A:SER79 3.7 20.9 1.0
CA A:MET54 3.8 28.7 1.0
OD2 A:ASP52 4.0 23.3 1.0
C A:ASP52 4.1 21.0 1.0
N A:ALA80 4.1 26.6 1.0
MN A:MN202 4.3 27.6 1.0
CG A:LEU53 4.3 27.3 1.0
CA A:ASP52 4.4 19.6 1.0
CB A:ASP52 4.5 20.4 1.0
C A:SER79 4.5 28.0 1.0
O A:MET54 4.5 30.4 1.0
O A:LEU78 4.6 21.5 1.0
C A:MET54 4.6 27.8 1.0
CG A:LYS81 4.7 34.7 1.0
SD A:MET54 4.7 46.2 1.0
O A:HOH392 4.8 50.2 1.0
O A:LEU53 4.8 26.8 1.0
NZ A:LYS101 4.8 30.8 1.0
N A:LYS81 4.9 24.7 1.0
CD1 A:LEU53 4.9 31.7 1.0
O A:HOH368 4.9 42.6 1.0
N A:SER79 5.0 17.9 1.0

Reference:

A.Riboldi-Tunnicliffe, A.Riboldi-Tunnicliffe, N.W.Issacs. N/A N/A.
Page generated: Sun Dec 13 12:49:08 2020

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