Atomistry » Fluorine » PDB 6eog-6fet » 6es0
Atomistry »
  Fluorine »
    PDB 6eog-6fet »
      6es0 »

Fluorine in PDB 6es0: Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35

Enzymatic activity of Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35

All present enzymatic activity of Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35:
2.7.10.2; 2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35, PDB code: 6es0 was solved by D.M.Pinkas, J.C.Bufton, C.Suebsuwong, S.S.Ray, B.Dai, J.A.Newman, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Degterev, G.D.Cuny, A.N.Bullock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.74 / 2.38
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.980, 83.740, 139.100, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 25.8

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35 (pdb code 6es0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35, PDB code: 6es0:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 6es0

Go back to Fluorine Binding Sites List in 6es0
Fluorine binding site 1 out of 4 in the Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:24.9
occ:1.00
F17 A:BW8401 0.0 24.9 1.0
C15 A:BW8401 1.4 28.2 1.0
C14 A:BW8401 2.4 23.7 1.0
C16 A:BW8401 2.4 25.6 1.0
N18 A:BW8401 2.7 27.4 1.0
CG2 A:THR95 3.3 20.4 1.0
CB A:LYS47 3.4 23.3 1.0
CG2 A:ILE93 3.6 26.2 1.0
C13 A:BW8401 3.6 26.3 1.0
C11 A:BW8401 3.7 25.6 1.0
CD A:LYS47 3.7 33.4 1.0
C19 A:BW8401 4.0 27.3 1.0
CB A:ILE93 4.0 25.7 1.0
C12 A:BW8401 4.1 29.1 1.0
O A:ILE93 4.2 24.9 1.0
CG A:LYS47 4.2 30.6 1.0
OG1 A:THR95 4.4 21.7 1.0
CB A:THR95 4.4 26.4 1.0
N A:LYS47 4.6 28.4 1.0
CA A:LYS47 4.6 21.4 1.0
CD2 A:LEU70 4.6 27.3 1.0
CD2 A:LEU79 4.7 21.3 1.0
C A:ILE93 4.7 27.2 1.0
O33 A:BW8401 4.7 24.9 1.0
N20 A:BW8401 4.7 33.7 1.0
O10 A:BW8401 4.8 26.0 1.0
OE2 A:GLU66 4.8 34.8 1.0
CD1 A:ILE93 4.9 33.2 1.0
CA A:ILE93 5.0 21.3 1.0

Fluorine binding site 2 out of 4 in 6es0

Go back to Fluorine Binding Sites List in 6es0
Fluorine binding site 2 out of 4 in the Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:34.1
occ:1.00
F27 A:BW8401 0.0 34.1 1.0
C25 A:BW8401 1.4 39.0 1.0
C26 A:BW8401 2.4 36.4 1.0
C24 A:BW8401 2.4 46.8 1.0
S28 A:BW8401 3.0 58.9 1.0
C29 A:BW8401 3.3 42.8 1.0
C21 A:BW8401 3.6 38.1 1.0
C23 A:BW8401 3.7 46.8 1.0
O A:ILE162 3.8 21.3 1.0
C30 A:BW8401 3.9 54.7 1.0
O31 A:BW8401 3.9 51.0 1.0
CG2 A:ILE162 4.1 26.1 1.0
C22 A:BW8401 4.1 41.0 1.0
CA A:ALA163 4.2 22.3 1.0
C A:ILE162 4.3 20.7 1.0
C A:ALA163 4.3 26.2 1.0
N A:ALA163 4.4 16.6 1.0
O A:ALA163 4.5 27.9 1.0
CD2 A:HIS144 4.5 35.5 1.0
CG2 A:ILE78 4.5 25.4 1.0
CD1 A:LEU70 4.6 27.6 1.0
NE2 A:HIS144 4.7 34.8 1.0
N A:ASP164 4.7 28.3 1.0
CD1 A:LEU135 4.7 25.4 1.0
CB A:ASP164 4.8 35.0 1.0
O33 A:BW8401 4.8 24.9 1.0
O32 A:BW8401 4.8 56.8 1.0
N20 A:BW8401 4.9 33.7 1.0
CB A:ILE162 5.0 27.4 1.0

Fluorine binding site 3 out of 4 in 6es0

Go back to Fluorine Binding Sites List in 6es0
Fluorine binding site 3 out of 4 in the Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:30.4
occ:1.00
F17 B:BW8401 0.0 30.4 1.0
C15 B:BW8401 1.4 22.1 1.0
C16 B:BW8401 2.4 22.7 1.0
C14 B:BW8401 2.4 23.2 1.0
N18 B:BW8401 2.8 24.1 1.0
CB B:LYS47 3.5 30.6 1.0
CD B:LYS47 3.6 33.7 1.0
CG2 B:THR95 3.6 22.5 1.0
C11 B:BW8401 3.6 27.2 1.0
C13 B:BW8401 3.6 22.0 1.0
CG2 B:ILE93 3.8 36.4 1.0
C19 B:BW8401 4.1 26.5 1.0
CB B:ILE93 4.1 35.8 1.0
O B:ILE93 4.1 31.6 1.0
C12 B:BW8401 4.1 18.7 1.0
CG B:LYS47 4.2 34.9 1.0
OG1 B:THR95 4.3 27.9 1.0
OE2 B:GLU66 4.6 30.8 1.0
CB B:THR95 4.6 29.0 1.0
N B:LYS47 4.6 35.3 1.0
C B:ILE93 4.6 32.2 1.0
CA B:LYS47 4.6 38.0 1.0
O10 B:BW8401 4.8 29.0 1.0
O33 B:BW8401 4.8 30.8 1.0
CD2 B:LEU79 4.8 26.1 1.0
N20 B:BW8401 4.9 25.4 1.0
CE B:LYS47 4.9 34.7 1.0
CA B:ILE93 5.0 34.0 1.0

Fluorine binding site 4 out of 4 in 6es0

Go back to Fluorine Binding Sites List in 6es0
Fluorine binding site 4 out of 4 in the Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of the Kinase Domain of Human RIPK2 in Complex with the Activation Loop Targeting Inhibitor Cs-R35 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:36.8
occ:1.00
F27 B:BW8401 0.0 36.8 1.0
C25 B:BW8401 1.4 38.9 1.0
C24 B:BW8401 2.4 46.6 1.0
C26 B:BW8401 2.4 32.5 1.0
S28 B:BW8401 3.0 53.0 1.0
C23 B:BW8401 3.6 38.2 1.0
C21 B:BW8401 3.7 29.1 1.0
O32 B:BW8401 3.7 44.7 1.0
O B:ILE162 3.8 28.6 1.0
CG2 B:ILE162 4.1 27.2 1.0
C B:ALA163 4.1 30.5 1.0
CA B:ALA163 4.1 20.9 1.0
CD2 B:HIS144 4.1 32.5 1.0
C22 B:BW8401 4.1 32.5 1.0
C B:ILE162 4.2 31.2 1.0
O B:ALA163 4.2 25.8 1.0
NE2 B:HIS144 4.3 27.6 1.0
N B:ALA163 4.3 26.7 1.0
CG2 B:ILE78 4.4 18.5 1.0
C29 B:BW8401 4.5 45.3 1.0
C30 B:BW8401 4.5 51.0 1.0
N B:ASP164 4.6 32.0 1.0
CD1 B:LEU70 4.6 27.4 1.0
CB B:ASP164 4.6 26.5 1.0
O33 B:BW8401 4.8 30.8 1.0
CB B:ILE162 4.8 30.4 1.0
N20 B:BW8401 4.9 25.4 1.0
CD1 B:LEU135 5.0 20.7 1.0

Reference:

C.Suebsuwong, D.M.Pinkas, S.S.Ray, J.C.Bufton, B.Dai, A.N.Bullock, A.Degterev, G.D.Cuny. Activation Loop Targeting Strategy For Design of Receptor-Interacting Protein Kinase 2 (RIPK2) Inhibitors. Bioorg. Med. Chem. Lett. V. 28 577 2018.
ISSN: ESSN 1464-3405
PubMed: 29409752
DOI: 10.1016/J.BMCL.2018.01.044
Page generated: Thu Aug 1 19:45:25 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy