Fluorine in PDB 6f4z: 2'F-Arag Modified Quadruplex with Flipped G-Tract and Central Tetrad

Fluorine Binding Sites:

The binding sites of Fluorine atom in the 2'F-Arag Modified Quadruplex with Flipped G-Tract and Central Tetrad (pdb code 6f4z). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the 2'F-Arag Modified Quadruplex with Flipped G-Tract and Central Tetrad, PDB code: 6f4z:

Fluorine binding site 1 out of 1 in 6f4z

Go back to Fluorine Binding Sites List in 6f4z
Fluorine binding site 1 out of 1 in the 2'F-Arag Modified Quadruplex with Flipped G-Tract and Central Tetrad


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of 2'F-Arag Modified Quadruplex with Flipped G-Tract and Central Tetrad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F15

b:0.0
occ:1.00
F A:GFL15 0.0 0.0 1.0
C2' A:GFL15 1.4 0.0 1.0
H2' A:GFL15 2.0 0.0 1.0
H8 A:GFL15 2.4 0.0 1.0
C3' A:GFL15 2.4 0.0 1.0
C1' A:GFL15 2.4 0.0 1.0
H3' A:GFL15 2.5 0.0 1.0
C8 A:GFL15 2.9 0.0 1.0
N9 A:GFL15 3.0 0.0 1.0
O4' A:GFL15 3.0 0.0 1.0
O5' A:GFL15 3.0 0.0 1.0
C4' A:GFL15 3.1 0.0 1.0
H1' A:GFL15 3.3 0.0 1.0
H2'' A:DG14 3.4 0.0 1.0
H22 A:DG3 3.5 0.0 1.0
O3' A:GFL15 3.5 0.0 1.0
C5' A:GFL15 3.6 0.0 1.0
N2 A:DG3 4.0 0.0 1.0
H21 A:DG3 4.1 0.0 1.0
H4' A:GFL15 4.1 0.0 1.0
H8 A:DG16 4.1 0.0 1.0
N7 A:GFL15 4.2 0.0 1.0
C4 A:GFL15 4.3 0.0 1.0
H5'1 A:GFL15 4.3 0.0 1.0
O2P A:GFL15 4.3 0.0 1.0
P A:GFL15 4.3 0.0 1.0
H5'2 A:GFL15 4.4 0.0 1.0
C2' A:DG14 4.5 0.0 1.0
N7 A:DG16 4.6 0.0 1.0
C8 A:DG16 4.7 0.0 1.0
C5 A:GFL15 4.9 0.0 1.0
H2' A:DG14 4.9 0.0 1.0
P A:DG16 4.9 0.0 1.0
C2 A:DG3 4.9 0.0 1.0
H1' A:DG14 5.0 0.0 1.0

Reference:

J.Dickerhoff, K.Weisz. Fluorine-Mediated Editing of A G-Quadruplex Folding Pathway. Chembiochem V. 19 927 2018.
ISSN: ESSN 1439-7633
PubMed: 29460996
DOI: 10.1002/CBIC.201800099
Page generated: Sun Dec 13 12:49:59 2020

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