Fluorine in PDB 6fh7: Crystal Structure of BAZ2B Bromodomain in Complex with 1- Methylpyridinone Compound 2

Protein crystallography data

The structure of Crystal Structure of BAZ2B Bromodomain in Complex with 1- Methylpyridinone Compound 2, PDB code: 6fh7 was solved by A.Dalle Vedove, D.Spiliotopoulos, G.Lolli, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.20 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 79.570, 96.393, 57.952, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 23.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of BAZ2B Bromodomain in Complex with 1- Methylpyridinone Compound 2 (pdb code 6fh7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of BAZ2B Bromodomain in Complex with 1- Methylpyridinone Compound 2, PDB code: 6fh7:

Fluorine binding site 1 out of 1 in 6fh7

Go back to Fluorine Binding Sites List in 6fh7
Fluorine binding site 1 out of 1 in the Crystal Structure of BAZ2B Bromodomain in Complex with 1- Methylpyridinone Compound 2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of BAZ2B Bromodomain in Complex with 1- Methylpyridinone Compound 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2001

b:79.2
occ:0.94
F22 A:EN22001 0.0 79.2 0.9
C21 A:EN22001 1.4 79.9 0.9
C20 A:EN22001 2.4 82.1 0.9
C23 A:EN22001 2.4 65.1 0.9
CD1 A:LEU1891 3.7 36.5 1.0
C19 A:EN22001 3.7 74.9 0.9
C24 A:EN22001 3.7 70.3 0.9
CG A:LEU1891 4.1 37.0 1.0
C18 A:EN22001 4.2 68.7 0.9
CB A:LEU1890 4.2 30.7 1.0
CD1 A:LEU1890 4.3 36.4 1.0
CG A:LEU1890 4.9 32.8 1.0

Reference:

A.Dalle Vedove, D.Spiliotopoulos, V.G.D'agostino, J.R.Marchand, A.Unzue, C.Nevado, G.Lolli, A.Caflisch. Structural Analysis of Small-Molecule Binding to the BAZ2A and BAZ2B Bromodomains. Chemmedchem V. 13 1479 2018.
ISSN: ESSN 1860-7187
PubMed: 29770599
DOI: 10.1002/CMDC.201800234
Page generated: Sun Dec 13 12:50:15 2020

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