Fluorine in PDB 6g2r: Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Protein crystallography data
The structure of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside, PDB code: 6g2r
was solved by
R.P.Jakob,
W.Schoenemann,
J.Cramer,
T.Muehlethaler,
P.Daetwyler,
P.Zihlmann,
B.Fiege,
C.P.Sager,
M.Smiesko,
S.Rabbani,
D.Eris,
O.Schwardt,
T.Maier,
B.Ernst,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
52.97 /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.115,
60.800,
105.938,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.5 /
22.2
|
Other elements in 6g2r:
The structure of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
(pdb code 6g2r). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside, PDB code: 6g2r:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 1 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:38.7
occ:1.00
|
FAH
|
A:EJK301
|
0.0
|
38.7
|
1.0
|
CAH
|
A:EJK301
|
1.2
|
42.6
|
1.0
|
HAC
|
A:EJK301
|
2.2
|
56.6
|
1.0
|
H61
|
A:EPE303
|
2.2
|
33.7
|
1.0
|
CAI
|
A:EJK301
|
2.3
|
42.8
|
1.0
|
CAG
|
A:EJK301
|
2.3
|
45.4
|
1.0
|
H21
|
A:EPE303
|
2.6
|
36.6
|
1.0
|
FAI
|
A:EJK301
|
2.6
|
42.1
|
1.0
|
CAC
|
A:EJK301
|
2.7
|
47.2
|
1.0
|
CAD
|
A:EJK301
|
2.8
|
46.8
|
1.0
|
H101
|
A:EPE303
|
3.2
|
48.6
|
1.0
|
CAC
|
B:EJK301
|
3.2
|
37.7
|
1.0
|
C6
|
A:EPE303
|
3.3
|
28.1
|
1.0
|
FAH
|
B:EJK301
|
3.4
|
38.6
|
1.0
|
CAB
|
B:EJK301
|
3.5
|
35.7
|
1.0
|
HAC
|
B:EJK301
|
3.5
|
45.2
|
1.0
|
CAJ
|
A:EJK301
|
3.5
|
44.1
|
1.0
|
CAL
|
A:EJK301
|
3.5
|
45.6
|
1.0
|
C2
|
A:EPE303
|
3.6
|
30.5
|
1.0
|
H51
|
A:EPE303
|
3.7
|
35.6
|
1.0
|
CAD
|
B:EJK301
|
3.7
|
39.6
|
1.0
|
HD1
|
A:TYR48
|
3.8
|
45.5
|
1.0
|
HAB
|
B:EJK301
|
3.8
|
42.8
|
1.0
|
N1
|
A:EPE303
|
3.8
|
26.2
|
1.0
|
C5
|
A:EPE303
|
3.9
|
29.7
|
1.0
|
CD1
|
A:TYR48
|
4.0
|
38.0
|
1.0
|
CAA
|
B:EJK301
|
4.0
|
34.1
|
1.0
|
H62
|
A:EPE303
|
4.0
|
33.7
|
1.0
|
CAK
|
A:EJK301
|
4.0
|
43.1
|
1.0
|
CAB
|
A:EJK301
|
4.0
|
46.5
|
1.0
|
C10
|
A:EPE303
|
4.0
|
40.5
|
1.0
|
CAE
|
A:EJK301
|
4.1
|
46.6
|
1.0
|
HB2
|
A:TYR48
|
4.1
|
40.0
|
1.0
|
CAE
|
B:EJK301
|
4.1
|
37.5
|
1.0
|
H102
|
A:EPE303
|
4.2
|
48.6
|
1.0
|
N4
|
A:EPE303
|
4.2
|
26.5
|
1.0
|
CAH
|
B:EJK301
|
4.2
|
41.8
|
1.0
|
CAF
|
B:EJK301
|
4.2
|
33.4
|
1.0
|
CAG
|
B:EJK301
|
4.3
|
43.3
|
1.0
|
C9
|
A:EPE303
|
4.3
|
28.4
|
1.0
|
C3
|
A:EPE303
|
4.3
|
31.1
|
1.0
|
H22
|
A:EPE303
|
4.3
|
36.6
|
1.0
|
H92
|
A:EPE303
|
4.3
|
34.0
|
1.0
|
CE1
|
A:TYR48
|
4.3
|
39.3
|
1.0
|
HE1
|
A:TYR48
|
4.4
|
47.1
|
1.0
|
CG
|
A:TYR48
|
4.4
|
35.1
|
1.0
|
H31
|
A:EPE303
|
4.5
|
37.2
|
1.0
|
HAB
|
A:EJK301
|
4.5
|
55.7
|
1.0
|
H1
|
B:EJK301
|
4.6
|
31.2
|
1.0
|
HAE
|
A:EJK301
|
4.6
|
55.8
|
1.0
|
CBE
|
A:EJK301
|
4.7
|
43.2
|
1.0
|
FAL
|
A:EJK301
|
4.7
|
44.8
|
1.0
|
CB
|
A:TYR48
|
4.8
|
33.4
|
1.0
|
O1
|
B:EJK301
|
4.8
|
30.2
|
1.0
|
HD13
|
B:ILE13
|
4.8
|
37.3
|
1.0
|
HAE
|
B:EJK301
|
4.8
|
44.9
|
1.0
|
H52
|
A:EPE303
|
4.9
|
35.6
|
1.0
|
CAA
|
A:EJK301
|
5.0
|
46.1
|
1.0
|
CAF
|
A:EJK301
|
5.0
|
43.1
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 2 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:42.1
occ:1.00
|
FAI
|
A:EJK301
|
0.0
|
42.1
|
1.0
|
CAI
|
A:EJK301
|
1.4
|
42.8
|
1.0
|
CAJ
|
A:EJK301
|
2.4
|
44.1
|
1.0
|
CAH
|
A:EJK301
|
2.4
|
42.6
|
1.0
|
FAH
|
A:EJK301
|
2.6
|
38.7
|
1.0
|
H1
|
B:EJK301
|
2.7
|
31.2
|
1.0
|
CBE
|
A:EJK301
|
2.8
|
43.2
|
1.0
|
HD13
|
B:ILE13
|
2.8
|
37.3
|
1.0
|
H101
|
A:EPE303
|
3.0
|
48.6
|
1.0
|
HG21
|
B:ILE13
|
3.0
|
35.7
|
1.0
|
H61
|
A:EPE303
|
3.1
|
33.7
|
1.0
|
HE1
|
A:TYR48
|
3.4
|
47.1
|
1.0
|
HAB
|
B:EJK301
|
3.5
|
42.8
|
1.0
|
H102
|
A:EPE303
|
3.5
|
48.6
|
1.0
|
NBF
|
A:EJK301
|
3.5
|
43.5
|
1.0
|
O1
|
B:EJK301
|
3.5
|
30.2
|
1.0
|
C1
|
B:EJK301
|
3.5
|
26.0
|
1.0
|
CAA
|
B:EJK301
|
3.5
|
34.1
|
1.0
|
CAB
|
B:EJK301
|
3.5
|
35.7
|
1.0
|
CAK
|
A:EJK301
|
3.6
|
43.1
|
1.0
|
CAG
|
A:EJK301
|
3.7
|
45.4
|
1.0
|
CE1
|
A:TYR48
|
3.7
|
39.3
|
1.0
|
C10
|
A:EPE303
|
3.7
|
40.5
|
1.0
|
CD1
|
B:ILE13
|
3.8
|
31.1
|
1.0
|
CG2
|
B:ILE13
|
4.0
|
29.8
|
1.0
|
H62
|
A:EPE303
|
4.0
|
33.7
|
1.0
|
C6
|
A:EPE303
|
4.0
|
28.1
|
1.0
|
H21
|
B:EJK301
|
4.1
|
27.0
|
1.0
|
CAL
|
A:EJK301
|
4.1
|
45.6
|
1.0
|
HD11
|
B:ILE13
|
4.1
|
37.3
|
1.0
|
HG23
|
B:ILE13
|
4.2
|
35.7
|
1.0
|
HD12
|
B:ILE13
|
4.2
|
37.3
|
1.0
|
HH
|
A:TYR48
|
4.2
|
52.6
|
1.0
|
CD1
|
A:TYR48
|
4.2
|
38.0
|
1.0
|
HD1
|
A:TYR48
|
4.2
|
45.5
|
1.0
|
CAF
|
B:EJK301
|
4.3
|
33.4
|
1.0
|
CAC
|
B:EJK301
|
4.3
|
37.7
|
1.0
|
CZ
|
A:TYR48
|
4.3
|
42.2
|
1.0
|
C2
|
B:EJK301
|
4.4
|
22.6
|
1.0
|
HG22
|
B:ILE13
|
4.5
|
35.7
|
1.0
|
HG12
|
B:ILE13
|
4.5
|
34.6
|
1.0
|
OH
|
A:TYR48
|
4.6
|
43.9
|
1.0
|
O5
|
B:EJK301
|
4.6
|
22.6
|
1.0
|
CG1
|
B:ILE13
|
4.6
|
28.9
|
1.0
|
H21
|
A:EPE303
|
4.6
|
36.6
|
1.0
|
HAC
|
A:EJK301
|
4.6
|
56.6
|
1.0
|
H51
|
A:EPE303
|
4.7
|
35.6
|
1.0
|
O1S
|
A:EPE303
|
4.7
|
45.1
|
1.0
|
FAK
|
A:EJK301
|
4.7
|
42.4
|
1.0
|
HAC
|
B:EJK301
|
4.8
|
45.2
|
1.0
|
CB
|
B:ILE13
|
4.8
|
28.2
|
1.0
|
C9
|
A:EPE303
|
4.8
|
28.4
|
1.0
|
CAD
|
A:EJK301
|
4.8
|
46.8
|
1.0
|
N1
|
A:EPE303
|
4.9
|
26.2
|
1.0
|
HB
|
B:ILE13
|
4.9
|
33.8
|
1.0
|
CAE
|
B:EJK301
|
4.9
|
37.5
|
1.0
|
S
|
A:EPE303
|
5.0
|
48.8
|
1.0
|
O2
|
B:EJK301
|
5.0
|
24.7
|
1.0
|
C5
|
A:EPE303
|
5.0
|
29.7
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 3 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:42.4
occ:1.00
|
FAK
|
A:EJK301
|
0.0
|
42.4
|
1.0
|
CAK
|
A:EJK301
|
1.4
|
43.1
|
1.0
|
CAJ
|
A:EJK301
|
2.4
|
44.1
|
1.0
|
CAL
|
A:EJK301
|
2.4
|
45.6
|
1.0
|
FAL
|
A:EJK301
|
2.6
|
44.8
|
1.0
|
CBE
|
A:EJK301
|
2.8
|
43.2
|
1.0
|
O
|
A:HOH435
|
3.2
|
37.0
|
1.0
|
NBF
|
A:EJK301
|
3.5
|
43.5
|
1.0
|
HE2
|
A:TYR48
|
3.5
|
45.6
|
1.0
|
CAI
|
A:EJK301
|
3.6
|
42.8
|
1.0
|
CAG
|
A:EJK301
|
3.7
|
45.4
|
1.0
|
CE2
|
A:TYR48
|
3.7
|
38.0
|
1.0
|
O
|
B:HOH426
|
3.8
|
46.9
|
1.0
|
CL1
|
B:EJK301
|
3.8
|
33.3
|
1.0
|
OH
|
A:TYR48
|
3.9
|
43.9
|
1.0
|
CZ
|
A:TYR48
|
3.9
|
42.2
|
1.0
|
CAH
|
A:EJK301
|
4.1
|
42.6
|
1.0
|
HH
|
A:TYR48
|
4.4
|
52.6
|
1.0
|
OH
|
A:TYR137
|
4.4
|
44.4
|
1.0
|
CD2
|
A:TYR48
|
4.4
|
37.1
|
1.0
|
HAE
|
A:EJK301
|
4.5
|
55.8
|
1.0
|
CAF
|
B:EJK301
|
4.5
|
33.4
|
1.0
|
HD22
|
B:ASN138
|
4.5
|
32.6
|
1.0
|
HH
|
A:TYR137
|
4.6
|
53.2
|
1.0
|
HG1
|
A:THR51
|
4.7
|
57.9
|
1.0
|
HD2
|
A:TYR48
|
4.7
|
44.4
|
1.0
|
HD21
|
B:ASN138
|
4.7
|
32.6
|
1.0
|
FAI
|
A:EJK301
|
4.7
|
42.1
|
1.0
|
CE1
|
A:TYR48
|
4.8
|
39.3
|
1.0
|
CAD
|
A:EJK301
|
4.8
|
46.8
|
1.0
|
HG21
|
A:THR51
|
4.8
|
54.5
|
1.0
|
ND2
|
B:ASN138
|
5.0
|
27.2
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 4 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:44.8
occ:1.00
|
FAL
|
A:EJK301
|
0.0
|
44.8
|
1.0
|
CAL
|
A:EJK301
|
1.3
|
45.6
|
1.0
|
HAE
|
A:EJK301
|
2.1
|
55.8
|
1.0
|
CAK
|
A:EJK301
|
2.3
|
43.1
|
1.0
|
CAG
|
A:EJK301
|
2.4
|
45.4
|
1.0
|
FAK
|
A:EJK301
|
2.6
|
42.4
|
1.0
|
CAE
|
A:EJK301
|
2.7
|
46.6
|
1.0
|
CAD
|
A:EJK301
|
2.8
|
46.8
|
1.0
|
OH
|
A:TYR137
|
3.3
|
44.4
|
1.0
|
HH
|
A:TYR137
|
3.3
|
53.2
|
1.0
|
HD11
|
A:ILE52
|
3.3
|
35.0
|
1.0
|
CZ
|
A:TYR137
|
3.6
|
41.3
|
1.0
|
CAJ
|
A:EJK301
|
3.6
|
44.1
|
1.0
|
CAH
|
A:EJK301
|
3.6
|
42.6
|
1.0
|
HD2
|
A:TYR48
|
3.9
|
44.4
|
1.0
|
CAF
|
A:EJK301
|
3.9
|
43.1
|
1.0
|
CD2
|
A:TYR48
|
4.0
|
37.1
|
1.0
|
CE2
|
A:TYR137
|
4.0
|
40.0
|
1.0
|
HE2
|
A:TYR137
|
4.0
|
48.0
|
1.0
|
HAE
|
B:EJK301
|
4.0
|
44.9
|
1.0
|
CAI
|
A:EJK301
|
4.1
|
42.8
|
1.0
|
CE2
|
A:TYR48
|
4.1
|
38.0
|
1.0
|
CAC
|
A:EJK301
|
4.2
|
47.2
|
1.0
|
HE2
|
A:TYR48
|
4.2
|
45.6
|
1.0
|
CD1
|
A:ILE52
|
4.2
|
29.2
|
1.0
|
CE1
|
A:TYR137
|
4.2
|
42.5
|
1.0
|
HD12
|
A:ILE52
|
4.2
|
35.0
|
1.0
|
HE1
|
A:TYR137
|
4.3
|
50.9
|
1.0
|
CAE
|
B:EJK301
|
4.4
|
37.5
|
1.0
|
O
|
B:HOH426
|
4.4
|
46.9
|
1.0
|
CL1
|
B:EJK301
|
4.4
|
33.3
|
1.0
|
CG
|
A:TYR48
|
4.5
|
35.1
|
1.0
|
HG13
|
A:ILE52
|
4.5
|
35.1
|
1.0
|
CAF
|
B:EJK301
|
4.6
|
33.4
|
1.0
|
CL1
|
A:EJK301
|
4.6
|
42.5
|
1.0
|
HG21
|
A:THR51
|
4.7
|
54.5
|
1.0
|
FAH
|
A:EJK301
|
4.7
|
38.7
|
1.0
|
HAC
|
A:EJK301
|
4.7
|
56.6
|
1.0
|
CBE
|
A:EJK301
|
4.7
|
43.2
|
1.0
|
HB3
|
A:TYR48
|
4.8
|
40.0
|
1.0
|
HB
|
A:THR51
|
4.8
|
55.2
|
1.0
|
CZ
|
A:TYR48
|
4.8
|
42.2
|
1.0
|
HD13
|
A:ILE52
|
4.8
|
35.0
|
1.0
|
CG1
|
A:ILE52
|
4.9
|
29.3
|
1.0
|
CD2
|
A:TYR137
|
4.9
|
38.1
|
1.0
|
CAA
|
A:EJK301
|
4.9
|
46.1
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 5 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:38.6
occ:1.00
|
FAH
|
B:EJK301
|
0.0
|
38.6
|
1.0
|
CAH
|
B:EJK301
|
1.3
|
41.8
|
1.0
|
HAC
|
B:EJK301
|
2.2
|
45.2
|
1.0
|
CAI
|
B:EJK301
|
2.3
|
45.4
|
1.0
|
CAG
|
B:EJK301
|
2.4
|
43.3
|
1.0
|
H81
|
A:EPE303
|
2.4
|
38.1
|
1.0
|
FAI
|
B:EJK301
|
2.7
|
43.8
|
1.0
|
CAC
|
B:EJK301
|
2.7
|
37.7
|
1.0
|
CAD
|
B:EJK301
|
2.9
|
39.6
|
1.0
|
N4
|
A:EPE303
|
2.9
|
26.5
|
1.0
|
H31
|
A:EPE303
|
3.1
|
37.2
|
1.0
|
C8
|
A:EPE303
|
3.2
|
31.8
|
1.0
|
H51
|
A:EPE303
|
3.3
|
35.6
|
1.0
|
CAC
|
A:EJK301
|
3.3
|
47.2
|
1.0
|
FAH
|
A:EJK301
|
3.4
|
38.7
|
1.0
|
H82
|
A:EPE303
|
3.4
|
38.1
|
1.0
|
C7
|
A:EPE303
|
3.4
|
29.2
|
1.0
|
HAC
|
A:EJK301
|
3.4
|
56.6
|
1.0
|
C3
|
A:EPE303
|
3.5
|
31.1
|
1.0
|
H21
|
A:EPE303
|
3.5
|
36.6
|
1.0
|
H71
|
A:EPE303
|
3.5
|
35.0
|
1.0
|
CAB
|
A:EJK301
|
3.6
|
46.5
|
1.0
|
C5
|
A:EPE303
|
3.6
|
29.7
|
1.0
|
CAJ
|
B:EJK301
|
3.6
|
50.9
|
1.0
|
CAL
|
B:EJK301
|
3.7
|
46.3
|
1.0
|
HAB
|
A:EJK301
|
3.8
|
55.7
|
1.0
|
HD1
|
B:TYR48
|
3.8
|
38.9
|
1.0
|
CAD
|
A:EJK301
|
3.9
|
46.8
|
1.0
|
H61
|
A:EPE303
|
3.9
|
33.7
|
1.0
|
CD1
|
B:TYR48
|
3.9
|
32.5
|
1.0
|
CAB
|
B:EJK301
|
4.0
|
35.7
|
1.0
|
C2
|
A:EPE303
|
4.0
|
30.5
|
1.0
|
CE1
|
B:TYR48
|
4.0
|
32.3
|
1.0
|
HE1
|
B:TYR48
|
4.1
|
38.7
|
1.0
|
CAK
|
B:EJK301
|
4.1
|
49.7
|
1.0
|
CAE
|
B:EJK301
|
4.1
|
37.5
|
1.0
|
CAA
|
A:EJK301
|
4.2
|
46.1
|
1.0
|
CAH
|
A:EJK301
|
4.2
|
42.6
|
1.0
|
C6
|
A:EPE303
|
4.3
|
28.1
|
1.0
|
CAE
|
A:EJK301
|
4.3
|
46.6
|
1.0
|
CAG
|
A:EJK301
|
4.4
|
45.4
|
1.0
|
H72
|
A:EPE303
|
4.4
|
35.0
|
1.0
|
O8
|
A:EPE303
|
4.4
|
31.4
|
1.0
|
H32
|
A:EPE303
|
4.4
|
37.2
|
1.0
|
HAB
|
B:EJK301
|
4.5
|
42.8
|
1.0
|
HB2
|
B:TYR48
|
4.5
|
32.7
|
1.0
|
CAF
|
A:EJK301
|
4.5
|
43.1
|
1.0
|
CG
|
B:TYR48
|
4.5
|
28.6
|
1.0
|
H52
|
A:EPE303
|
4.5
|
35.6
|
1.0
|
HAE
|
B:EJK301
|
4.6
|
44.9
|
1.0
|
H1
|
A:EJK301
|
4.7
|
45.0
|
1.0
|
CZ
|
B:TYR48
|
4.7
|
34.5
|
1.0
|
HD13
|
A:ILE13
|
4.7
|
38.8
|
1.0
|
CBE
|
B:EJK301
|
4.8
|
54.5
|
1.0
|
N1
|
A:EPE303
|
4.8
|
26.2
|
1.0
|
FAL
|
B:EJK301
|
4.8
|
45.3
|
1.0
|
H22
|
A:EPE303
|
4.9
|
36.6
|
1.0
|
HO8
|
A:EPE303
|
4.9
|
37.6
|
1.0
|
O1
|
A:EJK301
|
5.0
|
41.7
|
1.0
|
CAA
|
B:EJK301
|
5.0
|
34.1
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 6 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:43.8
occ:1.00
|
FAI
|
B:EJK301
|
0.0
|
43.8
|
1.0
|
CAI
|
B:EJK301
|
1.3
|
45.4
|
1.0
|
CAH
|
B:EJK301
|
2.4
|
41.8
|
1.0
|
CAJ
|
B:EJK301
|
2.4
|
50.9
|
1.0
|
H81
|
A:EPE303
|
2.5
|
38.1
|
1.0
|
FAH
|
B:EJK301
|
2.7
|
38.6
|
1.0
|
HD13
|
A:ILE13
|
2.7
|
38.8
|
1.0
|
CBE
|
B:EJK301
|
2.8
|
54.5
|
1.0
|
H1
|
A:EJK301
|
2.8
|
45.0
|
1.0
|
H82
|
A:EPE303
|
3.0
|
38.1
|
1.0
|
C8
|
A:EPE303
|
3.2
|
31.8
|
1.0
|
HG21
|
A:ILE13
|
3.2
|
36.0
|
1.0
|
HE1
|
B:TYR48
|
3.4
|
38.7
|
1.0
|
NBF
|
B:EJK301
|
3.5
|
56.2
|
1.0
|
HAB
|
A:EJK301
|
3.5
|
55.7
|
1.0
|
CAK
|
B:EJK301
|
3.6
|
49.7
|
1.0
|
CAB
|
A:EJK301
|
3.6
|
46.5
|
1.0
|
CAG
|
B:EJK301
|
3.6
|
43.3
|
1.0
|
CD1
|
A:ILE13
|
3.6
|
32.4
|
1.0
|
H31
|
A:EPE303
|
3.7
|
37.2
|
1.0
|
CAA
|
A:EJK301
|
3.7
|
46.1
|
1.0
|
C1
|
A:EJK301
|
3.7
|
37.5
|
1.0
|
O1
|
A:EJK301
|
3.7
|
41.7
|
1.0
|
CE1
|
B:TYR48
|
3.8
|
32.3
|
1.0
|
HD11
|
A:ILE13
|
4.0
|
38.8
|
1.0
|
HD12
|
A:ILE13
|
4.0
|
38.8
|
1.0
|
O8
|
A:EPE303
|
4.0
|
31.4
|
1.0
|
OH
|
B:TYR48
|
4.1
|
35.3
|
1.0
|
CAL
|
B:EJK301
|
4.1
|
46.3
|
1.0
|
CZ
|
B:TYR48
|
4.1
|
34.5
|
1.0
|
CG2
|
A:ILE13
|
4.2
|
30.1
|
1.0
|
H21
|
A:EJK301
|
4.3
|
38.5
|
1.0
|
CAC
|
A:EJK301
|
4.3
|
47.2
|
1.0
|
C7
|
A:EPE303
|
4.4
|
29.2
|
1.0
|
HG23
|
A:ILE13
|
4.4
|
36.0
|
1.0
|
CAF
|
A:EJK301
|
4.4
|
43.1
|
1.0
|
N4
|
A:EPE303
|
4.5
|
26.5
|
1.0
|
CD1
|
B:TYR48
|
4.5
|
32.5
|
1.0
|
C3
|
A:EPE303
|
4.6
|
31.1
|
1.0
|
HG12
|
A:ILE13
|
4.6
|
36.2
|
1.0
|
C2
|
A:EJK301
|
4.6
|
32.1
|
1.0
|
CG1
|
A:ILE13
|
4.6
|
30.2
|
1.0
|
H22
|
A:EJK301
|
4.6
|
36.9
|
1.0
|
HH
|
B:TYR48
|
4.6
|
42.3
|
1.0
|
HAC
|
B:EJK301
|
4.6
|
45.2
|
1.0
|
HD1
|
B:TYR48
|
4.7
|
38.9
|
1.0
|
O5
|
A:EJK301
|
4.7
|
34.1
|
1.0
|
FAK
|
B:EJK301
|
4.7
|
51.2
|
1.0
|
HG22
|
A:ILE13
|
4.7
|
36.0
|
1.0
|
HAC
|
A:EJK301
|
4.8
|
56.6
|
1.0
|
H71
|
A:EPE303
|
4.8
|
35.0
|
1.0
|
CAD
|
B:EJK301
|
4.8
|
39.6
|
1.0
|
CB
|
A:ILE13
|
4.9
|
30.1
|
1.0
|
HO8
|
A:EPE303
|
4.9
|
37.6
|
1.0
|
HB
|
A:ILE13
|
5.0
|
36.1
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 7 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:51.2
occ:1.00
|
FAK
|
B:EJK301
|
0.0
|
51.2
|
1.0
|
CAK
|
B:EJK301
|
1.4
|
49.7
|
1.0
|
CAL
|
B:EJK301
|
2.4
|
46.3
|
1.0
|
CAJ
|
B:EJK301
|
2.4
|
50.9
|
1.0
|
FAL
|
B:EJK301
|
2.7
|
45.3
|
1.0
|
CBE
|
B:EJK301
|
2.8
|
54.5
|
1.0
|
O
|
B:HOH463
|
3.3
|
46.1
|
1.0
|
NBF
|
B:EJK301
|
3.5
|
56.2
|
1.0
|
HH
|
B:TYR48
|
3.5
|
42.3
|
1.0
|
HE2
|
B:TYR48
|
3.6
|
36.2
|
1.0
|
CAI
|
B:EJK301
|
3.6
|
45.4
|
1.0
|
CAG
|
B:EJK301
|
3.7
|
43.3
|
1.0
|
OH
|
B:TYR48
|
3.9
|
35.3
|
1.0
|
CE2
|
B:TYR48
|
3.9
|
30.2
|
1.0
|
OH
|
B:TYR137
|
4.0
|
40.4
|
1.0
|
CL1
|
A:EJK301
|
4.0
|
42.5
|
1.0
|
HH
|
B:TYR137
|
4.1
|
48.4
|
1.0
|
CZ
|
B:TYR48
|
4.1
|
34.5
|
1.0
|
CAH
|
B:EJK301
|
4.1
|
41.8
|
1.0
|
HAE
|
B:EJK301
|
4.5
|
44.9
|
1.0
|
CAF
|
A:EJK301
|
4.6
|
43.1
|
1.0
|
HG1
|
B:THR51
|
4.7
|
47.5
|
1.0
|
HG21
|
B:THR51
|
4.7
|
44.1
|
1.0
|
FAI
|
B:EJK301
|
4.7
|
43.8
|
1.0
|
CD2
|
B:TYR48
|
4.8
|
30.1
|
1.0
|
CZ
|
B:TYR137
|
4.8
|
38.2
|
1.0
|
CAD
|
B:EJK301
|
4.8
|
39.6
|
1.0
|
HD22
|
A:ASN138
|
4.9
|
39.2
|
1.0
|
HE1
|
B:TYR137
|
5.0
|
43.3
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 6g2r
Go back to
Fluorine Binding Sites List in 6g2r
Fluorine binding site 8 out
of 8 in the Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of Fimh in Complex with A Tetraflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:45.3
occ:1.00
|
FAL
|
B:EJK301
|
0.0
|
45.3
|
1.0
|
CAL
|
B:EJK301
|
1.4
|
46.3
|
1.0
|
HAE
|
B:EJK301
|
2.1
|
44.9
|
1.0
|
CAK
|
B:EJK301
|
2.3
|
49.7
|
1.0
|
CAG
|
B:EJK301
|
2.4
|
43.3
|
1.0
|
FAK
|
B:EJK301
|
2.7
|
51.2
|
1.0
|
CAE
|
B:EJK301
|
2.7
|
37.5
|
1.0
|
CAD
|
B:EJK301
|
2.8
|
39.6
|
1.0
|
HH
|
B:TYR137
|
3.1
|
48.4
|
1.0
|
OH
|
B:TYR137
|
3.1
|
40.4
|
1.0
|
HD11
|
B:ILE52
|
3.2
|
35.5
|
1.0
|
CZ
|
B:TYR137
|
3.4
|
38.2
|
1.0
|
CAJ
|
B:EJK301
|
3.6
|
50.9
|
1.0
|
HE2
|
B:TYR137
|
3.6
|
43.3
|
1.0
|
CE2
|
B:TYR137
|
3.7
|
36.1
|
1.0
|
CAH
|
B:EJK301
|
3.7
|
41.8
|
1.0
|
HE2
|
B:TYR48
|
3.9
|
36.2
|
1.0
|
CAF
|
B:EJK301
|
3.9
|
33.4
|
1.0
|
HD2
|
B:TYR48
|
4.0
|
36.1
|
1.0
|
CE2
|
B:TYR48
|
4.0
|
30.2
|
1.0
|
CD2
|
B:TYR48
|
4.0
|
30.1
|
1.0
|
CD1
|
B:ILE52
|
4.1
|
29.6
|
1.0
|
HAE
|
A:EJK301
|
4.1
|
55.8
|
1.0
|
CE1
|
B:TYR137
|
4.1
|
36.1
|
1.0
|
CAI
|
B:EJK301
|
4.1
|
45.4
|
1.0
|
CAC
|
B:EJK301
|
4.2
|
37.7
|
1.0
|
HD12
|
B:ILE52
|
4.2
|
35.5
|
1.0
|
HE1
|
B:TYR137
|
4.3
|
43.3
|
1.0
|
CAE
|
A:EJK301
|
4.4
|
46.6
|
1.0
|
HG13
|
B:ILE52
|
4.5
|
33.8
|
1.0
|
CD2
|
B:TYR137
|
4.6
|
33.9
|
1.0
|
CL1
|
A:EJK301
|
4.6
|
42.5
|
1.0
|
CAF
|
A:EJK301
|
4.6
|
43.1
|
1.0
|
CL1
|
B:EJK301
|
4.6
|
33.3
|
1.0
|
CZ
|
B:TYR48
|
4.7
|
34.5
|
1.0
|
HD13
|
B:ILE52
|
4.7
|
35.5
|
1.0
|
HG21
|
B:THR51
|
4.7
|
44.1
|
1.0
|
HAC
|
B:EJK301
|
4.7
|
45.2
|
1.0
|
CG
|
B:TYR48
|
4.8
|
28.6
|
1.0
|
HB
|
B:THR51
|
4.8
|
44.4
|
1.0
|
CBE
|
B:EJK301
|
4.8
|
54.5
|
1.0
|
CG1
|
B:ILE52
|
4.8
|
28.2
|
1.0
|
FAH
|
B:EJK301
|
4.8
|
38.6
|
1.0
|
CAA
|
B:EJK301
|
4.9
|
34.1
|
1.0
|
CD1
|
B:TYR137
|
4.9
|
33.8
|
1.0
|
HG12
|
B:ILE52
|
5.0
|
33.8
|
1.0
|
|
Reference:
W.Schonemann,
J.Cramer,
T.Muhlethaler,
B.Fiege,
M.Silbermann,
S.Rabbani,
P.Datwyler,
P.Zihlmann,
R.P.Jakob,
C.P.Sager,
M.Smiesko,
O.Schwardt,
T.Maier,
B.Ernst.
Improvement of Aglycone Pi-Stacking Yields Nanomolar to Sub-Nanomolar Fimh Antagonists. Chemmedchem V. 14 749 2019.
ISSN: ESSN 1860-7187
PubMed: 30710416
DOI: 10.1002/CMDC.201900051
Page generated: Thu Aug 1 20:22:51 2024
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