Fluorine in PDB 6g2s: Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Protein crystallography data
The structure of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside, PDB code: 6g2s
was solved by
R.P.Jakob,
W.Schoenemann,
J.Cramer,
T.Muehlethaler,
P.Daetwyler,
P.Zihlmann,
B.Fiege,
C.P.Sager,
M.Smiesko,
S.Rabbani,
D.Eris,
O.Schwardt,
T.Maier,
B.Ernst,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.01 /
2.20
|
Space group
|
P 32
|
Cell size a, b, c (Å), α, β, γ (°)
|
86.010,
86.010,
203.140,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.7 /
22.2
|
Fluorine Binding Sites:
Fluorine binding site 1 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 1 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:49.1
occ:1.00
|
FAH
|
A:EJN301
|
0.0
|
49.1
|
1.0
|
CAH
|
A:EJN301
|
1.3
|
46.5
|
1.0
|
CAI
|
A:EJN301
|
2.3
|
47.5
|
1.0
|
CAG
|
A:EJN301
|
2.4
|
47.5
|
1.0
|
FAI
|
A:EJN301
|
2.7
|
47.8
|
1.0
|
HAC
|
A:EJN301
|
2.8
|
55.3
|
1.0
|
CAD
|
A:EJN301
|
2.8
|
46.7
|
1.0
|
CAC
|
A:EJN301
|
3.0
|
46.1
|
1.0
|
CAJ
|
A:EJN301
|
3.6
|
49.4
|
1.0
|
CAL
|
A:EJN301
|
3.6
|
48.7
|
1.0
|
CAE
|
A:EJN301
|
3.9
|
45.6
|
1.0
|
CAK
|
A:EJN301
|
4.1
|
48.1
|
1.0
|
HD2
|
A:TYR48
|
4.1
|
40.3
|
1.0
|
CAB
|
A:EJN301
|
4.2
|
45.9
|
1.0
|
HAE
|
A:EJN301
|
4.3
|
54.8
|
1.0
|
CD2
|
A:TYR48
|
4.7
|
33.6
|
1.0
|
HAB
|
A:EJN301
|
4.7
|
55.1
|
1.0
|
FAJ
|
A:EJN301
|
4.7
|
53.2
|
1.0
|
FAL
|
A:EJN301
|
4.7
|
49.5
|
1.0
|
HB2
|
A:TYR48
|
4.8
|
39.9
|
1.0
|
CAF
|
A:EJN301
|
4.9
|
45.5
|
1.0
|
CAA
|
A:EJN301
|
5.0
|
45.0
|
1.0
|
|
Fluorine binding site 2 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 2 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:47.8
occ:1.00
|
FAI
|
A:EJN301
|
0.0
|
47.8
|
1.0
|
CAI
|
A:EJN301
|
1.3
|
47.5
|
1.0
|
CAH
|
A:EJN301
|
2.4
|
46.5
|
1.0
|
CAJ
|
A:EJN301
|
2.4
|
49.4
|
1.0
|
FAH
|
A:EJN301
|
2.7
|
49.1
|
1.0
|
FAJ
|
A:EJN301
|
2.7
|
53.2
|
1.0
|
HE2
|
A:TYR48
|
3.6
|
41.7
|
1.0
|
CAK
|
A:EJN301
|
3.6
|
48.1
|
1.0
|
CAG
|
A:EJN301
|
3.6
|
47.5
|
1.0
|
CE2
|
A:TYR48
|
4.0
|
34.7
|
1.0
|
CAL
|
A:EJN301
|
4.1
|
48.7
|
1.0
|
HD2
|
A:TYR48
|
4.1
|
40.3
|
1.0
|
CD2
|
A:TYR48
|
4.3
|
33.6
|
1.0
|
FAK
|
A:EJN301
|
4.7
|
50.5
|
1.0
|
CZ
|
A:TYR48
|
4.8
|
35.3
|
1.0
|
HAC
|
A:EJN301
|
4.9
|
55.3
|
1.0
|
CAD
|
A:EJN301
|
4.9
|
46.7
|
1.0
|
|
Fluorine binding site 3 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 3 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:53.2
occ:1.00
|
FAJ
|
A:EJN301
|
0.0
|
53.2
|
1.0
|
CAJ
|
A:EJN301
|
1.3
|
49.4
|
1.0
|
CAK
|
A:EJN301
|
2.4
|
48.1
|
1.0
|
CAI
|
A:EJN301
|
2.4
|
47.5
|
1.0
|
FAK
|
A:EJN301
|
2.7
|
50.5
|
1.0
|
FAI
|
A:EJN301
|
2.7
|
47.8
|
1.0
|
CZ
|
A:TYR48
|
3.4
|
35.3
|
1.0
|
CE2
|
A:TYR48
|
3.4
|
34.7
|
1.0
|
OH
|
A:TYR48
|
3.5
|
39.9
|
1.0
|
HE2
|
A:TYR48
|
3.5
|
41.7
|
1.0
|
CAH
|
A:EJN301
|
3.6
|
46.5
|
1.0
|
CAL
|
A:EJN301
|
3.6
|
48.7
|
1.0
|
HH
|
A:TYR48
|
3.8
|
47.9
|
1.0
|
CE1
|
A:TYR48
|
4.0
|
35.9
|
1.0
|
CD2
|
A:TYR48
|
4.1
|
33.6
|
1.0
|
CAG
|
A:EJN301
|
4.1
|
47.5
|
1.0
|
HE1
|
A:TYR48
|
4.3
|
43.1
|
1.0
|
HD2
|
A:TYR48
|
4.5
|
40.3
|
1.0
|
CD1
|
A:TYR48
|
4.5
|
34.4
|
1.0
|
CG
|
A:TYR48
|
4.6
|
34.6
|
1.0
|
FAH
|
A:EJN301
|
4.7
|
49.1
|
1.0
|
FAL
|
A:EJN301
|
4.7
|
49.5
|
1.0
|
|
Fluorine binding site 4 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 4 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:50.5
occ:1.00
|
FAK
|
A:EJN301
|
0.0
|
50.5
|
1.0
|
CAK
|
A:EJN301
|
1.3
|
48.1
|
1.0
|
CAJ
|
A:EJN301
|
2.4
|
49.4
|
1.0
|
CAL
|
A:EJN301
|
2.4
|
48.7
|
1.0
|
FAL
|
A:EJN301
|
2.7
|
49.5
|
1.0
|
FAJ
|
A:EJN301
|
2.7
|
53.2
|
1.0
|
HG1
|
A:THR51
|
3.2
|
52.8
|
1.0
|
CD1
|
A:TYR48
|
3.6
|
34.4
|
1.0
|
CE1
|
A:TYR48
|
3.6
|
35.9
|
1.0
|
CAI
|
A:EJN301
|
3.6
|
47.5
|
1.0
|
CAG
|
A:EJN301
|
3.6
|
47.5
|
1.0
|
HB
|
A:THR51
|
3.7
|
52.9
|
1.0
|
HD1
|
A:TYR48
|
3.8
|
41.3
|
1.0
|
HE1
|
A:TYR48
|
3.8
|
43.1
|
1.0
|
OG1
|
A:THR51
|
3.9
|
44.0
|
1.0
|
CG
|
A:TYR48
|
3.9
|
34.6
|
1.0
|
CZ
|
A:TYR48
|
4.0
|
35.3
|
1.0
|
HG21
|
A:THR51
|
4.0
|
54.6
|
1.0
|
CAH
|
A:EJN301
|
4.1
|
46.5
|
1.0
|
CB
|
A:THR51
|
4.2
|
44.1
|
1.0
|
CD2
|
A:TYR48
|
4.3
|
33.6
|
1.0
|
CE2
|
A:TYR48
|
4.3
|
34.7
|
1.0
|
HB3
|
A:TYR48
|
4.4
|
39.9
|
1.0
|
CG2
|
A:THR51
|
4.6
|
45.5
|
1.0
|
CB
|
A:TYR48
|
4.7
|
33.3
|
1.0
|
OH
|
A:TYR48
|
4.7
|
39.9
|
1.0
|
FAI
|
A:EJN301
|
4.7
|
47.8
|
1.0
|
HH
|
A:TYR48
|
4.7
|
47.9
|
1.0
|
CAD
|
A:EJN301
|
4.9
|
46.7
|
1.0
|
HD2
|
A:TYR48
|
4.9
|
40.3
|
1.0
|
HB2
|
A:TYR48
|
4.9
|
39.9
|
1.0
|
HE2
|
A:TYR48
|
4.9
|
41.7
|
1.0
|
|
Fluorine binding site 5 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 5 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:49.5
occ:1.00
|
FAL
|
A:EJN301
|
0.0
|
49.5
|
1.0
|
CAL
|
A:EJN301
|
1.3
|
48.7
|
1.0
|
CAK
|
A:EJN301
|
2.3
|
48.1
|
1.0
|
CAG
|
A:EJN301
|
2.4
|
47.5
|
1.0
|
HD11
|
A:ILE52
|
2.6
|
40.7
|
1.0
|
FAK
|
A:EJN301
|
2.7
|
50.5
|
1.0
|
HAE
|
A:EJN301
|
2.8
|
54.8
|
1.0
|
CAD
|
A:EJN301
|
2.8
|
46.7
|
1.0
|
CAE
|
A:EJN301
|
3.0
|
45.6
|
1.0
|
HD12
|
A:ILE52
|
3.1
|
40.7
|
1.0
|
CD1
|
A:ILE52
|
3.2
|
33.9
|
1.0
|
HB3
|
A:TYR48
|
3.3
|
39.9
|
1.0
|
HG13
|
A:ILE52
|
3.6
|
41.9
|
1.0
|
CAJ
|
A:EJN301
|
3.6
|
49.4
|
1.0
|
CAH
|
A:EJN301
|
3.6
|
46.5
|
1.0
|
HB
|
A:THR51
|
3.7
|
52.9
|
1.0
|
HB2
|
A:TYR48
|
3.8
|
39.9
|
1.0
|
CB
|
A:TYR48
|
3.9
|
33.3
|
1.0
|
CAC
|
A:EJN301
|
3.9
|
46.1
|
1.0
|
CG1
|
A:ILE52
|
4.0
|
34.9
|
1.0
|
HD13
|
A:ILE52
|
4.0
|
40.7
|
1.0
|
CG
|
A:TYR48
|
4.1
|
34.6
|
1.0
|
CAI
|
A:EJN301
|
4.1
|
47.5
|
1.0
|
OH
|
A:TYR137
|
4.1
|
50.6
|
1.0
|
CAF
|
A:EJN301
|
4.2
|
45.5
|
1.0
|
CZ
|
A:TYR137
|
4.2
|
50.2
|
1.0
|
HG21
|
A:THR51
|
4.2
|
54.6
|
1.0
|
HD1
|
A:TYR48
|
4.3
|
41.3
|
1.0
|
CD1
|
A:TYR48
|
4.3
|
34.4
|
1.0
|
HE1
|
A:TYR137
|
4.4
|
60.1
|
1.0
|
CE1
|
A:TYR137
|
4.4
|
50.1
|
1.0
|
HAC
|
A:EJN301
|
4.4
|
55.3
|
1.0
|
HH
|
A:TYR137
|
4.4
|
60.7
|
1.0
|
HG12
|
A:ILE52
|
4.4
|
41.9
|
1.0
|
CB
|
A:THR51
|
4.6
|
44.1
|
1.0
|
HG1
|
A:THR51
|
4.7
|
52.8
|
1.0
|
CD2
|
A:TYR48
|
4.7
|
33.6
|
1.0
|
FAJ
|
A:EJN301
|
4.7
|
53.2
|
1.0
|
HG22
|
A:THR51
|
4.7
|
54.6
|
1.0
|
CG2
|
A:THR51
|
4.7
|
45.5
|
1.0
|
FAH
|
A:EJN301
|
4.7
|
49.1
|
1.0
|
HAF
|
A:EJN301
|
4.7
|
54.6
|
1.0
|
CE2
|
A:TYR137
|
4.8
|
49.7
|
1.0
|
HD2
|
A:TYR48
|
4.9
|
40.3
|
1.0
|
CAB
|
A:EJN301
|
4.9
|
45.9
|
1.0
|
CAA
|
A:EJN301
|
5.0
|
45.0
|
1.0
|
|
Fluorine binding site 6 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 6 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:49.5
occ:1.00
|
FAH
|
B:EJN301
|
0.0
|
49.5
|
1.0
|
CAH
|
B:EJN301
|
1.3
|
48.0
|
1.0
|
CAI
|
B:EJN301
|
2.3
|
47.5
|
1.0
|
CAG
|
B:EJN301
|
2.4
|
46.6
|
1.0
|
HG21
|
D:ILE13
|
2.7
|
28.3
|
1.0
|
FAI
|
B:EJN301
|
2.7
|
49.5
|
1.0
|
HAC
|
B:EJN301
|
2.8
|
52.9
|
1.0
|
H21
|
D:EJN301
|
2.8
|
56.2
|
1.0
|
CAD
|
B:EJN301
|
2.8
|
44.4
|
1.0
|
CAC
|
B:EJN301
|
3.0
|
44.0
|
1.0
|
HG22
|
D:ILE13
|
3.1
|
28.3
|
1.0
|
O
|
D:HOH451
|
3.1
|
49.3
|
1.0
|
CG2
|
D:ILE13
|
3.2
|
23.6
|
1.0
|
HG23
|
D:ILE13
|
3.2
|
28.3
|
1.0
|
CAJ
|
B:EJN301
|
3.6
|
47.7
|
1.0
|
CAL
|
B:EJN301
|
3.6
|
45.8
|
1.0
|
C2
|
D:EJN301
|
3.8
|
46.8
|
1.0
|
H1
|
D:EJN301
|
3.9
|
55.6
|
1.0
|
O1
|
D:EJN301
|
3.9
|
49.5
|
1.0
|
CAE
|
B:EJN301
|
3.9
|
44.0
|
1.0
|
HD2
|
B:TYR48
|
4.0
|
36.2
|
1.0
|
C1
|
D:EJN301
|
4.1
|
46.4
|
1.0
|
CAK
|
B:EJN301
|
4.1
|
46.6
|
1.0
|
CAB
|
B:EJN301
|
4.2
|
43.8
|
1.0
|
HE2
|
D:PHE142
|
4.3
|
34.1
|
1.0
|
HAE
|
B:EJN301
|
4.4
|
52.8
|
1.0
|
O2
|
D:EJN301
|
4.5
|
46.0
|
1.0
|
OD2
|
D:ASP140
|
4.6
|
40.7
|
1.0
|
CD2
|
B:TYR48
|
4.6
|
30.2
|
1.0
|
H22
|
D:EJN301
|
4.6
|
55.2
|
1.0
|
CB
|
D:ILE13
|
4.6
|
26.1
|
1.0
|
HD13
|
D:ILE13
|
4.6
|
37.5
|
1.0
|
HZ
|
D:PHE142
|
4.6
|
32.6
|
1.0
|
FAJ
|
B:EJN301
|
4.7
|
52.6
|
1.0
|
HB2
|
B:TYR48
|
4.7
|
35.1
|
1.0
|
HAB
|
B:EJN301
|
4.7
|
52.5
|
1.0
|
FAL
|
B:EJN301
|
4.7
|
48.8
|
1.0
|
H31
|
D:EJN301
|
4.7
|
53.7
|
1.0
|
C3
|
D:EJN301
|
4.8
|
44.8
|
1.0
|
CAA
|
D:EJN301
|
4.9
|
51.3
|
1.0
|
HB
|
D:ILE13
|
4.9
|
31.3
|
1.0
|
CAF
|
B:EJN301
|
4.9
|
44.0
|
1.0
|
HE2
|
B:TYR48
|
4.9
|
35.8
|
1.0
|
CE2
|
D:PHE142
|
5.0
|
28.4
|
1.0
|
CAA
|
B:EJN301
|
5.0
|
43.0
|
1.0
|
|
Fluorine binding site 7 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 7 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:49.5
occ:1.00
|
FAI
|
B:EJN301
|
0.0
|
49.5
|
1.0
|
CAI
|
B:EJN301
|
1.3
|
47.5
|
1.0
|
CAH
|
B:EJN301
|
2.4
|
48.0
|
1.0
|
CAJ
|
B:EJN301
|
2.4
|
47.7
|
1.0
|
HZ
|
D:PHE142
|
2.4
|
32.6
|
1.0
|
FAH
|
B:EJN301
|
2.7
|
49.5
|
1.0
|
FAJ
|
B:EJN301
|
2.7
|
52.6
|
1.0
|
CZ
|
D:PHE142
|
3.0
|
27.2
|
1.0
|
HE2
|
D:PHE142
|
3.2
|
34.1
|
1.0
|
HG22
|
D:ILE13
|
3.3
|
28.3
|
1.0
|
CE2
|
D:PHE142
|
3.4
|
28.4
|
1.0
|
HE2
|
B:TYR48
|
3.5
|
35.8
|
1.0
|
CAK
|
B:EJN301
|
3.6
|
46.6
|
1.0
|
CAG
|
B:EJN301
|
3.6
|
46.6
|
1.0
|
HA2
|
D:GLY14
|
3.7
|
26.9
|
1.0
|
CE2
|
B:TYR48
|
3.9
|
29.9
|
1.0
|
HG23
|
D:ILE13
|
3.9
|
28.3
|
1.0
|
CG2
|
D:ILE13
|
4.0
|
23.6
|
1.0
|
H21
|
D:EJN301
|
4.0
|
56.2
|
1.0
|
CE1
|
D:PHE142
|
4.0
|
27.1
|
1.0
|
HA3
|
D:GLY14
|
4.1
|
26.9
|
1.0
|
CAL
|
B:EJN301
|
4.1
|
45.8
|
1.0
|
HD2
|
B:TYR48
|
4.1
|
36.2
|
1.0
|
HG21
|
D:ILE13
|
4.1
|
28.3
|
1.0
|
CD2
|
B:TYR48
|
4.2
|
30.2
|
1.0
|
HE1
|
D:PHE142
|
4.2
|
32.5
|
1.0
|
CA
|
D:GLY14
|
4.2
|
22.4
|
1.0
|
O
|
D:HOH451
|
4.3
|
49.3
|
1.0
|
OD2
|
D:ASP140
|
4.4
|
40.7
|
1.0
|
HD23
|
F:LEU68
|
4.4
|
43.9
|
1.0
|
HD21
|
F:LEU68
|
4.4
|
43.9
|
1.0
|
N
|
D:GLY14
|
4.5
|
20.6
|
1.0
|
CD2
|
D:PHE142
|
4.6
|
29.6
|
1.0
|
OD1
|
D:ASP140
|
4.6
|
43.8
|
1.0
|
H
|
D:GLY14
|
4.6
|
24.8
|
1.0
|
CZ
|
B:TYR48
|
4.6
|
33.0
|
1.0
|
O
|
D:HOH455
|
4.7
|
41.1
|
1.0
|
CG
|
D:ASP140
|
4.7
|
41.2
|
1.0
|
FAK
|
B:EJN301
|
4.7
|
49.3
|
1.0
|
HAC
|
B:EJN301
|
4.9
|
52.9
|
1.0
|
CAD
|
B:EJN301
|
4.9
|
44.4
|
1.0
|
CD2
|
F:LEU68
|
4.9
|
36.5
|
1.0
|
C
|
D:ILE13
|
4.9
|
20.2
|
1.0
|
OH
|
B:TYR48
|
5.0
|
32.8
|
1.0
|
H22
|
D:EJN301
|
5.0
|
55.2
|
1.0
|
|
Fluorine binding site 8 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 8 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:52.6
occ:1.00
|
FAJ
|
B:EJN301
|
0.0
|
52.6
|
1.0
|
CAJ
|
B:EJN301
|
1.3
|
47.7
|
1.0
|
CAI
|
B:EJN301
|
2.4
|
47.5
|
1.0
|
CAK
|
B:EJN301
|
2.4
|
46.6
|
1.0
|
FAI
|
B:EJN301
|
2.7
|
49.5
|
1.0
|
FAK
|
B:EJN301
|
2.7
|
49.3
|
1.0
|
HB3
|
F:SER69
|
3.1
|
34.1
|
1.0
|
HD23
|
F:LEU68
|
3.2
|
43.9
|
1.0
|
CZ
|
B:TYR48
|
3.3
|
33.0
|
1.0
|
CE2
|
B:TYR48
|
3.4
|
29.9
|
1.0
|
OH
|
B:TYR48
|
3.4
|
32.8
|
1.0
|
HE2
|
B:TYR48
|
3.5
|
35.8
|
1.0
|
CAH
|
B:EJN301
|
3.6
|
48.0
|
1.0
|
CAL
|
B:EJN301
|
3.6
|
45.8
|
1.0
|
HD21
|
F:LEU68
|
3.7
|
43.9
|
1.0
|
HG
|
F:LEU68
|
3.7
|
45.2
|
1.0
|
HH
|
B:TYR48
|
3.8
|
39.3
|
1.0
|
HZ
|
D:PHE142
|
3.8
|
32.6
|
1.0
|
CD2
|
F:LEU68
|
3.8
|
36.5
|
1.0
|
CE1
|
B:TYR48
|
3.9
|
31.6
|
1.0
|
O
|
D:HOH455
|
4.0
|
41.1
|
1.0
|
CD2
|
B:TYR48
|
4.1
|
30.2
|
1.0
|
CB
|
F:SER69
|
4.1
|
28.4
|
1.0
|
CAG
|
B:EJN301
|
4.1
|
46.6
|
1.0
|
HE1
|
B:TYR48
|
4.2
|
37.9
|
1.0
|
CG
|
F:LEU68
|
4.3
|
37.6
|
1.0
|
HB2
|
F:SER69
|
4.4
|
34.1
|
1.0
|
HA
|
F:SER69
|
4.4
|
35.0
|
1.0
|
CD1
|
B:TYR48
|
4.4
|
31.7
|
1.0
|
CZ
|
D:PHE142
|
4.5
|
27.2
|
1.0
|
HD2
|
B:TYR48
|
4.5
|
36.2
|
1.0
|
CG
|
B:TYR48
|
4.5
|
32.3
|
1.0
|
HE1
|
D:PHE142
|
4.5
|
32.5
|
1.0
|
HB3
|
F:LEU68
|
4.6
|
42.0
|
1.0
|
HD22
|
F:LEU68
|
4.7
|
43.9
|
1.0
|
FAL
|
B:EJN301
|
4.7
|
48.8
|
1.0
|
FAH
|
B:EJN301
|
4.7
|
49.5
|
1.0
|
CA
|
F:SER69
|
4.7
|
29.2
|
1.0
|
CE1
|
D:PHE142
|
4.9
|
27.1
|
1.0
|
HG
|
F:SER69
|
4.9
|
39.0
|
1.0
|
N
|
F:SER69
|
5.0
|
31.2
|
1.0
|
OG
|
F:SER69
|
5.0
|
32.5
|
1.0
|
|
Fluorine binding site 9 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 9 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:49.3
occ:1.00
|
FAK
|
B:EJN301
|
0.0
|
49.3
|
1.0
|
CAK
|
B:EJN301
|
1.3
|
46.6
|
1.0
|
CAL
|
B:EJN301
|
2.4
|
45.8
|
1.0
|
CAJ
|
B:EJN301
|
2.4
|
47.7
|
1.0
|
HB3
|
F:SER69
|
2.6
|
34.1
|
1.0
|
FAL
|
B:EJN301
|
2.7
|
48.8
|
1.0
|
FAJ
|
B:EJN301
|
2.7
|
52.6
|
1.0
|
HB2
|
F:SER69
|
2.8
|
34.1
|
1.0
|
CB
|
F:SER69
|
3.1
|
28.4
|
1.0
|
HB
|
B:THR51
|
3.4
|
47.1
|
1.0
|
CD1
|
B:TYR48
|
3.5
|
31.7
|
1.0
|
CE1
|
B:TYR48
|
3.5
|
31.6
|
1.0
|
CAI
|
B:EJN301
|
3.6
|
47.5
|
1.0
|
CAG
|
B:EJN301
|
3.6
|
46.6
|
1.0
|
HD1
|
B:TYR48
|
3.6
|
38.0
|
1.0
|
HG
|
F:SER69
|
3.7
|
39.0
|
1.0
|
HG21
|
B:THR51
|
3.7
|
48.0
|
1.0
|
HE1
|
B:TYR48
|
3.7
|
37.9
|
1.0
|
OG1
|
B:THR51
|
3.8
|
40.4
|
1.0
|
CG
|
B:TYR48
|
3.9
|
32.3
|
1.0
|
OG
|
F:SER69
|
4.0
|
32.5
|
1.0
|
CZ
|
B:TYR48
|
4.0
|
33.0
|
1.0
|
CB
|
B:THR51
|
4.0
|
39.2
|
1.0
|
CAH
|
B:EJN301
|
4.1
|
48.0
|
1.0
|
HA
|
F:SER69
|
4.2
|
35.0
|
1.0
|
CD2
|
B:TYR48
|
4.3
|
30.2
|
1.0
|
HB3
|
B:TYR48
|
4.3
|
35.1
|
1.0
|
CG2
|
B:THR51
|
4.3
|
40.0
|
1.0
|
CE2
|
B:TYR48
|
4.3
|
29.9
|
1.0
|
CA
|
F:SER69
|
4.3
|
29.2
|
1.0
|
HG1
|
B:THR51
|
4.5
|
48.4
|
1.0
|
CB
|
B:TYR48
|
4.6
|
29.3
|
1.0
|
OH
|
B:TYR48
|
4.7
|
32.8
|
1.0
|
HH
|
B:TYR48
|
4.7
|
39.3
|
1.0
|
FAI
|
B:EJN301
|
4.7
|
49.5
|
1.0
|
HG22
|
B:THR51
|
4.8
|
48.0
|
1.0
|
HD2
|
B:TYR48
|
4.9
|
36.2
|
1.0
|
CAD
|
B:EJN301
|
4.9
|
44.4
|
1.0
|
HB2
|
B:TYR48
|
4.9
|
35.1
|
1.0
|
HE2
|
B:TYR48
|
4.9
|
35.8
|
1.0
|
HAE
|
B:EJN301
|
4.9
|
52.8
|
1.0
|
|
Fluorine binding site 10 out
of 45 in 6g2s
Go back to
Fluorine Binding Sites List in 6g2s
Fluorine binding site 10 out
of 45 in the Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Crystal Structure of Fimh in Complex with A Pentaflourinated Biphenyl Alpha D-Mannoside within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F301
b:48.8
occ:1.00
|
FAL
|
B:EJN301
|
0.0
|
48.8
|
1.0
|
CAL
|
B:EJN301
|
1.3
|
45.8
|
1.0
|
CAK
|
B:EJN301
|
2.3
|
46.6
|
1.0
|
CAG
|
B:EJN301
|
2.4
|
46.6
|
1.0
|
FAK
|
B:EJN301
|
2.7
|
49.3
|
1.0
|
HD11
|
B:ILE52
|
2.7
|
38.9
|
1.0
|
HAE
|
B:EJN301
|
2.7
|
52.8
|
1.0
|
CAD
|
B:EJN301
|
2.8
|
44.4
|
1.0
|
HD12
|
B:ILE52
|
3.0
|
38.9
|
1.0
|
CAE
|
B:EJN301
|
3.0
|
44.0
|
1.0
|
HB3
|
B:TYR48
|
3.1
|
35.1
|
1.0
|
CD1
|
B:ILE52
|
3.3
|
32.4
|
1.0
|
HG13
|
B:ILE52
|
3.3
|
38.4
|
1.0
|
HB
|
B:THR51
|
3.5
|
47.1
|
1.0
|
CAJ
|
B:EJN301
|
3.6
|
47.7
|
1.0
|
CAH
|
B:EJN301
|
3.6
|
48.0
|
1.0
|
HB2
|
B:TYR48
|
3.6
|
35.1
|
1.0
|
CB
|
B:TYR48
|
3.7
|
29.3
|
1.0
|
CG1
|
B:ILE52
|
3.8
|
32.0
|
1.0
|
CG
|
B:TYR48
|
3.9
|
32.3
|
1.0
|
CAC
|
B:EJN301
|
3.9
|
44.0
|
1.0
|
HG21
|
B:THR51
|
4.0
|
48.0
|
1.0
|
CAI
|
B:EJN301
|
4.1
|
47.5
|
1.0
|
HD13
|
B:ILE52
|
4.1
|
38.9
|
1.0
|
HD1
|
B:TYR48
|
4.1
|
38.0
|
1.0
|
CAF
|
B:EJN301
|
4.1
|
44.0
|
1.0
|
CD1
|
B:TYR48
|
4.2
|
31.7
|
1.0
|
CB
|
B:THR51
|
4.3
|
39.2
|
1.0
|
HG12
|
B:ILE52
|
4.4
|
38.4
|
1.0
|
HAC
|
B:EJN301
|
4.4
|
52.9
|
1.0
|
HG22
|
B:THR51
|
4.4
|
48.0
|
1.0
|
OH
|
B:TYR137
|
4.4
|
47.0
|
1.0
|
CZ
|
B:TYR137
|
4.4
|
47.0
|
1.0
|
CG2
|
B:THR51
|
4.5
|
40.0
|
1.0
|
CD2
|
B:TYR48
|
4.5
|
30.2
|
1.0
|
CE1
|
B:TYR137
|
4.6
|
46.5
|
1.0
|
HH
|
B:TYR137
|
4.6
|
56.4
|
1.0
|
HE1
|
B:TYR137
|
4.6
|
55.9
|
1.0
|
HAF
|
B:EJN301
|
4.7
|
52.8
|
1.0
|
FAJ
|
B:EJN301
|
4.7
|
52.6
|
1.0
|
FAH
|
B:EJN301
|
4.7
|
49.5
|
1.0
|
HD2
|
B:TYR48
|
4.8
|
36.2
|
1.0
|
CAB
|
B:EJN301
|
4.9
|
43.8
|
1.0
|
HB
|
B:ILE52
|
4.9
|
39.8
|
1.0
|
O
|
B:TYR48
|
4.9
|
26.8
|
1.0
|
CE2
|
B:TYR137
|
4.9
|
47.0
|
1.0
|
CAA
|
B:EJN301
|
4.9
|
43.0
|
1.0
|
OG1
|
B:THR51
|
5.0
|
40.4
|
1.0
|
CE1
|
B:TYR48
|
5.0
|
31.6
|
1.0
|
|
Reference:
W.Schonemann,
J.Cramer,
T.Muhlethaler,
B.Fiege,
M.Silbermann,
S.Rabbani,
P.Datwyler,
P.Zihlmann,
R.P.Jakob,
C.P.Sager,
M.Smiesko,
O.Schwardt,
T.Maier,
B.Ernst.
Improvement of Aglycone Pi-Stacking Yields Nanomolar to Sub-Nanomolar Fimh Antagonists. Chemmedchem V. 14 749 2019.
ISSN: ESSN 1860-7187
PubMed: 30710416
DOI: 10.1002/CMDC.201900051
Page generated: Thu Aug 1 20:22:52 2024
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