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Fluorine in PDB 6gej: Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.

Enzymatic activity of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.

All present enzymatic activity of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.:
3.6.4.12;

Other elements in 6gej:

The structure of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms
Zinc (Zn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. (pdb code 6gej). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution., PDB code: 6gej:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 6gej

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Fluorine binding site 1 out of 6 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
M:F1602

b:12.6
occ:1.00
 F1 M:BEF1602 0.0 12.6 1.0
BE M:BEF1602 1.5 15.0 1.0
NZ M:LYS727 2.4 0.6 1.0
O3B M:ADP1601 2.4 10.8 1.0
F3 M:BEF1602 2.5 9.8 1.0
O1B M:ADP1601 2.6 31.8 1.0
F2 M:BEF1602 2.6 10.1 1.0
PB M:ADP1601 2.9 15.2 1.0
CA M:MET723 3.2 74.5 1.0
CB M:MET723 3.4 0.5 1.0
CE M:LYS727 3.8 0.6 1.0
O3A M:ADP1601 4.0 4.1 1.0
N M:MET723 4.0 74.5 1.0
O2B M:ADP1601 4.1 11.8 1.0
N M:GLY724 4.2 0.8 1.0
MG M:MG1603 4.2 14.8 1.0
C M:MET723 4.3 74.5 1.0
O M:ASP721 4.4 0.2 1.0
NE2 M:GLN1350 4.6 99.8 1.0
C M:GLU722 4.6 0.2 1.0
O M:GLU722 4.6 0.2 1.0
CD M:LYS727 4.7 0.6 1.0
CG M:MET723 4.8 0.5 1.0
NH2 M:ARG1357 4.9 0.1 1.0
CA M:GLY853 4.9 0.1 1.0
CG M:LYS727 5.0 0.6 1.0
NH2 M:ARG1354 5.0 91.4 1.0

Fluorine binding site 2 out of 6 in 6gej

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Fluorine binding site 2 out of 6 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
M:F1602

b:10.1
occ:1.00
 F2 M:BEF1602 0.0 10.1 1.0
BE M:BEF1602 1.6 15.0 1.0
O1B M:ADP1601 2.0 31.8 1.0
NH2 M:ARG1354 2.4 91.4 1.0
F3 M:BEF1602 2.5 9.8 1.0
F1 M:BEF1602 2.6 12.6 1.0
NH2 M:ARG1357 3.2 0.1 1.0
CZ M:ARG1354 3.2 91.4 1.0
PB M:ADP1601 3.3 15.2 1.0
NH1 M:ARG1354 3.3 91.4 1.0
CB M:MET723 3.3 0.5 1.0
O3A M:ADP1601 3.7 4.1 1.0
O3B M:ADP1601 3.7 10.8 1.0
CA M:MET723 3.8 74.5 1.0
NE2 M:GLN1350 3.8 99.8 1.0
N M:GLY724 4.1 0.8 1.0
CZ M:ARG1357 4.3 0.1 1.0
C M:MET723 4.3 74.5 1.0
NE M:ARG1354 4.5 91.4 1.0
O2B M:ADP1601 4.5 11.8 1.0
O M:LEU1326 4.5 92.6 1.0
MG M:MG1603 4.6 14.8 1.0
CG M:MET723 4.7 0.5 1.0
NH1 M:ARG1357 4.7 0.1 1.0
NZ M:LYS727 4.8 0.6 1.0

Fluorine binding site 3 out of 6 in 6gej

Go back to Fluorine Binding Sites List in 6gej
Fluorine binding site 3 out of 6 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
M:F1602

b:9.8
occ:1.00
 F3 M:BEF1602 0.0 9.8 1.0
BE M:BEF1602 1.5 15.0 1.0
MG M:MG1603 2.2 14.8 1.0
O3B M:ADP1601 2.3 10.8 1.0
O3A M:ADP1601 2.4 4.1 1.0
PB M:ADP1601 2.5 15.2 1.0
F2 M:BEF1602 2.5 10.1 1.0
F1 M:BEF1602 2.5 12.6 1.0
O1B M:ADP1601 2.5 31.8 1.0
NZ M:LYS727 3.5 0.6 1.0
PA M:ADP1601 3.9 7.5 1.0
O2B M:ADP1601 4.0 11.8 1.0
NH2 M:ARG1354 4.3 91.4 1.0
O1A M:ADP1601 4.4 4.3 1.0
NH2 M:ARG1357 4.5 0.1 1.0
O2A M:ADP1601 4.6 6.7 1.0
CE M:LYS727 4.7 0.6 1.0
O M:GLY1327 4.7 94.0 1.0
OD1 M:ASP824 4.8 0.5 1.0
O5' M:ADP1601 5.0 21.3 1.0

Fluorine binding site 4 out of 6 in 6gej

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Fluorine binding site 4 out of 6 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:F502

b:39.1
occ:1.00
 F1 R:BEF502 0.0 39.1 1.0
BE R:BEF502 1.5 39.1 1.0
F3 R:BEF502 2.5 39.1 1.0
F2 R:BEF502 2.6 39.1 1.0
O3B R:ADP501 2.7 39.1 1.0
PB R:ADP501 3.5 39.1 1.0
O1B R:ADP501 3.5 39.1 1.0
OG R:SER12 3.6 0.8 1.0
N R:SER12 3.7 0.5 1.0
CB R:ASN196 3.9 0.6 1.0
CA R:GLY11 4.1 0.8 1.0
MG R:MG503 4.1 39.1 1.0
O2B R:ADP501 4.2 39.1 1.0
CB R:SER12 4.2 1.0 1.0
C R:GLY11 4.3 1.0 1.0
CA R:SER12 4.6 1.0 1.0
N R:ASN196 4.7 0.0 1.0
ND2 R:ASN196 4.8 0.6 1.0
O R:ASN10 4.8 0.8 1.0
O3A R:ADP501 4.9 39.1 1.0
CG R:ASN196 4.9 0.6 1.0
CA R:ASN196 5.0 99.0 1.0

Fluorine binding site 5 out of 6 in 6gej

Go back to Fluorine Binding Sites List in 6gej
Fluorine binding site 5 out of 6 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:F502

b:39.1
occ:1.00
 F2 R:BEF502 0.0 39.1 1.0
BE R:BEF502 1.6 39.1 1.0
O3B R:ADP501 2.1 39.1 1.0
F3 R:BEF502 2.5 39.1 1.0
F1 R:BEF502 2.6 39.1 1.0
N R:ASN196 2.8 0.0 1.0
N R:PHE195 3.1 96.3 1.0
CB R:ASN196 3.2 0.6 1.0
CA R:GLY194 3.3 91.3 1.0
C R:GLY194 3.3 0.3 1.0
PB R:ADP501 3.5 39.1 1.0
CA R:ASN196 3.5 99.0 1.0
C R:PHE195 3.8 0.6 1.0
N R:CYS197 3.8 0.3 1.0
CA R:PHE195 3.9 0.8 1.0
O R:CYS197 4.0 98.7 1.0
O1B R:ADP501 4.0 39.1 1.0
O3A R:ADP501 4.1 39.1 1.0
O R:GLY194 4.1 92.3 1.0
C R:ASN196 4.2 0.8 1.0
N R:GLY194 4.4 91.6 1.0
CB R:PHE195 4.4 0.3 1.0
O2B R:ADP501 4.6 39.1 1.0
CG R:ASN196 4.6 0.6 1.0
OG R:SER12 4.9 0.8 1.0
MG R:MG503 4.9 39.1 1.0
C R:CYS197 4.9 95.3 1.0
O R:PHE195 4.9 0.6 1.0
ND2 R:ASN196 5.0 0.6 1.0

Fluorine binding site 6 out of 6 in 6gej

Go back to Fluorine Binding Sites List in 6gej
Fluorine binding site 6 out of 6 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:F502

b:39.1
occ:1.00
 F3 R:BEF502 0.0 39.1 1.0
BE R:BEF502 1.5 39.1 1.0
O1B R:ADP501 2.2 39.1 1.0
O3B R:ADP501 2.3 39.1 1.0
MG R:MG503 2.4 39.1 1.0
F2 R:BEF502 2.5 39.1 1.0
F1 R:BEF502 2.5 39.1 1.0
PB R:ADP501 2.7 39.1 1.0
O3A R:ADP501 3.4 39.1 1.0
O2B R:ADP501 4.1 39.1 1.0
CA R:GLY194 4.1 91.3 1.0
OD2 R:ASP192 4.5 90.0 1.0
N R:PHE195 4.8 96.3 1.0
C R:GLY194 4.9 0.3 1.0
PA R:ADP501 5.0 39.1 1.0

Reference:

O.Willhoft, M.Ghoneim, C.L.Lin, E.Y.D.Chua, M.Wilkinson, Y.Chaban, R.Ayala, E.A.Mccormack, L.Ocloo, D.S.Rueda, D.B.Wigley. Structure and Dynamics of the Yeast SWR1-Nucleosome Complex. Science V. 362 2018.
ISSN: ESSN 1095-9203
PubMed: 30309918
DOI: 10.1126/SCIENCE.AAT7716
Page generated: Thu Aug 1 20:28:32 2024

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