Fluorine in PDB 6h6r: Fragment Derived Xiap Inhibitor

Enzymatic activity of Fragment Derived Xiap Inhibitor

All present enzymatic activity of Fragment Derived Xiap Inhibitor:
2.3.2.27;

Protein crystallography data

The structure of Fragment Derived Xiap Inhibitor, PDB code: 6h6r was solved by P.A.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.56 / 2.03
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.352, 71.352, 105.569, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.3

Other elements in 6h6r:

The structure of Fragment Derived Xiap Inhibitor also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Fragment Derived Xiap Inhibitor (pdb code 6h6r). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Fragment Derived Xiap Inhibitor, PDB code: 6h6r:

Fluorine binding site 1 out of 1 in 6h6r

Go back to Fluorine Binding Sites List in 6h6r
Fluorine binding site 1 out of 1 in the Fragment Derived Xiap Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Fragment Derived Xiap Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:36.3
occ:0.99
F22 A:FUE403 0.0 36.3 1.0
C21 A:FUE403 1.4 33.3 1.0
C20 A:FUE403 2.3 32.2 1.0
C23 A:FUE403 2.3 26.9 1.0
H61 A:FUE403 2.5 32.8 1.0
H62 A:FUE403 2.5 27.2 1.0
CD2 A:LEU292 3.0 48.2 1.0
NZ A:LYS299 3.5 82.9 1.0
CG A:LYS299 3.6 48.4 1.0
C24 A:FUE403 3.6 26.0 1.0
C19 A:FUE403 3.6 34.8 1.0
O A:VAL298 3.7 27.3 1.0
CD1 A:LEU292 3.7 39.2 1.0
CA A:GLY306 4.0 26.6 1.0
CG A:LEU292 4.0 39.0 1.0
C18 A:FUE403 4.1 29.8 1.0
O A:HOH547 4.2 56.6 1.0
CD A:LYS299 4.2 52.9 1.0
C A:VAL298 4.2 29.3 1.0
H63 A:FUE403 4.4 27.1 1.0
CE A:LYS299 4.4 71.1 1.0
H60 A:FUE403 4.4 34.9 1.0
CB A:LYS297 4.4 28.5 1.0
CD A:LYS297 4.5 41.1 1.0
O A:HOH577 4.5 53.5 1.0
CB A:LYS299 4.6 29.0 1.0
N A:VAL298 4.7 27.9 1.0
N A:LYS299 4.8 24.5 1.0
C A:GLY306 4.8 29.4 1.0
CG A:LYS297 4.8 36.6 1.0
N A:LEU307 4.9 26.9 1.0
CA A:LYS299 4.9 24.8 1.0
C A:LYS297 5.0 30.4 1.0
CA A:VAL298 5.0 27.6 1.0

Reference:

C.N.Johnson, J.S.Ahn, I.M.Buck, E.Chiarparin, J.E.H.Day, A.Hopkins, S.Howard, E.J.Lewis, V.Martins, A.Millemaggi, J.M.Munck, L.W.Page, T.Peakman, M.Reader, S.J.Rich, G.Saxty, T.Smyth, N.T.Thompson, G.A.Ward, P.A.Williams, N.E.Wilsher, G.Chessari. A Fragment-Derived Clinical Candidate For Antagonism of X-Linked and Cellular Inhibitor of Apoptosis Proteins: 1-(6-[(4-Fluorophenyl)Methyl]-5-(Hydroxymethyl)-3, 3-Dimethyl-1 H,2 H,3 H-Pyrrolo[3,2- B]Pyridin-1-Yl)-2-[(2 R,5 R)-5-Methyl-2-([(3R)-3-Methylmorpholin-4-Yl]Methyl) Piperazin-1-Yl]Ethan-1-One (ASTX660). J. Med. Chem. V. 61 7314 2018.
ISSN: ISSN 1520-4804
PubMed: 30091600
DOI: 10.1021/ACS.JMEDCHEM.8B00900
Page generated: Sun Dec 13 12:51:58 2020

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