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Fluorine in PDB 6h7z: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1, PDB code: 6h7z was solved by L.Motlova, Z.Novakova, C.Barinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.222, 130.389, 158.469, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20.6

Other elements in 6h7z:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Calcium (Ca) 1 atom
Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1 (pdb code 6h7z). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1, PDB code: 6h7z:

Fluorine binding site 1 out of 1 in 6h7z

Go back to Fluorine Binding Sites List in 6h7z
Fluorine binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor Rna 2-65-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F832

b:33.7
occ:1.00
 FAX A:FVW832 0.0 33.7 1.0
CAU A:FVW832 1.2 32.8 1.0
NAV A:FVW832 2.2 31.8 1.0
CAT A:FVW832 2.3 30.7 1.0
N A:LYS207 3.2 17.9 1.0
O A:HOH1141 3.3 15.8 1.0
C A:GLY206 3.3 17.3 1.0
CAW A:FVW832 3.4 31.6 1.0
CA A:GLY206 3.5 16.4 1.0
CAS A:FVW832 3.5 30.6 1.0
O A:VAL208 3.5 15.0 1.0
N A:VAL208 3.6 17.6 1.0
OG A:SER547 3.6 53.9 1.0
O A:HOH1013 3.7 16.4 1.0
O A:HOH934 3.7 31.4 1.0
C A:LYS207 3.8 18.3 1.0
C A:VAL208 3.9 15.4 1.0
O A:GLY206 3.9 17.5 1.0
CAR A:FVW832 3.9 31.5 1.0
N A:GLY206 4.0 16.1 1.0
CA A:LYS207 4.1 19.6 1.0
CE2 A:TYR700 4.1 15.4 1.0
CA A:VAL208 4.2 16.3 1.0
CD2 A:TYR700 4.4 15.3 1.0
O A:LYS207 4.5 18.1 1.0
OH A:TYR234 4.6 19.1 1.0
N A:PHE209 4.7 14.4 1.0
O A:HOH1208 4.8 10.3 1.0
CB A:SER547 5.0 51.0 1.0

Reference:

R.Nakajima, Z.Novakova, W.Tueckmantel, L.Motlova, C.Barinka, A.P.Kozikowski. 2-Aminoadipic Acid-C(O)-Glutamate Based Prostate-Specific Membrane Antigen Ligands For Potential Use As Theranostics. Acs Med Chem Lett V. 9 1099 2018.
ISSN: ISSN 1948-5875
PubMed: 30429952
DOI: 10.1021/ACSMEDCHEMLETT.8B00318
Page generated: Thu Aug 1 20:54:11 2024

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