Fluorine in PDB 6h8z: T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A.

Enzymatic activity of T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A.

All present enzymatic activity of T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A.:
5.4.2.6;

Protein crystallography data

The structure of T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A., PDB code: 6h8z was solved by A.J.Robertson, C.Bisson, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.08 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.267, 53.887, 82.269, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 28.4

Other elements in 6h8z:

The structure of T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A. also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A. (pdb code 6h8z). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A., PDB code: 6h8z:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6h8z

Go back to Fluorine Binding Sites List in 6h8z
Fluorine binding site 1 out of 3 in the T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:23.6
occ:1.00
F1 A:MGF302 0.0 23.6 1.0
MG A:MGF302 1.9 38.2 1.0
OG A:SER114 2.5 20.0 1.0
N A:ASP10 2.5 19.8 1.0
OD1 A:ASP8 2.9 21.0 1.0
F2 A:MGF302 3.0 25.9 1.0
N A:LEU9 3.0 19.3 1.0
F3 A:MGF302 3.1 27.8 1.0
CB A:LEU9 3.2 22.2 1.0
CB A:SER114 3.3 21.8 1.0
CA A:LEU9 3.3 20.1 1.0
C A:LEU9 3.4 20.8 1.0
CB A:ASP10 3.5 22.9 1.0
CA A:ASP10 3.5 21.9 1.0
CG A:ASP8 3.7 21.9 1.0
CA A:SER114 3.8 20.4 1.0
N A:ALA115 4.1 22.4 1.0
OD2 A:ASP8 4.1 23.8 1.0
C A:ASP8 4.2 20.4 1.0
CG A:LEU9 4.3 26.3 1.0
MG A:MG301 4.3 21.7 1.0
O A:ASP10 4.4 20.0 1.0
C A:SER114 4.4 22.2 1.0
C A:ASP10 4.4 19.8 1.0
N A:SER116 4.5 23.5 1.0
CD2 A:LEU9 4.6 27.2 1.0
O A:LEU9 4.6 21.6 1.0
CA A:ASP8 4.7 20.0 1.0
CB A:ASP8 4.8 21.2 1.0
CB A:SER116 4.8 23.8 1.0
NZ A:LYS145 4.9 26.1 1.0

Fluorine binding site 2 out of 3 in 6h8z

Go back to Fluorine Binding Sites List in 6h8z
Fluorine binding site 2 out of 3 in the T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:25.9
occ:1.00
F2 A:MGF302 0.0 25.9 1.0
MG A:MG301 1.7 21.7 1.0
MG A:MGF302 1.9 38.2 1.0
O A:HOH433 2.5 21.2 1.0
O A:HOH438 2.5 25.3 1.0
OD2 A:ASP8 2.8 23.8 1.0
O A:ASP10 2.8 20.0 1.0
OD1 A:ASP8 2.9 21.0 1.0
F1 A:MGF302 3.0 23.6 1.0
CG A:ASP8 3.2 21.9 1.0
CB A:ASP10 3.3 22.9 1.0
F3 A:MGF302 3.3 27.8 1.0
O A:HOH467 3.4 30.6 1.0
C A:ASP10 3.5 19.8 1.0
CA A:ASP10 3.6 21.9 1.0
N A:ASP10 3.6 19.8 1.0
OD1 A:ASP170 3.7 24.4 1.0
OD2 A:ASP10 4.0 26.4 1.0
CG A:ASP10 4.2 25.9 1.0
C A:LEU9 4.6 20.8 1.0
CG A:ASP170 4.7 26.4 1.0
NZ A:LYS145 4.7 26.1 1.0
CB A:ASP8 4.7 21.2 1.0
N A:LEU9 4.7 19.3 1.0
OD2 A:ASP170 4.7 24.4 1.0
N A:GLY11 4.8 23.8 1.0
OE1 A:GLU169 4.8 23.1 1.0
OE2 A:GLU169 4.9 21.4 1.0

Fluorine binding site 3 out of 3 in 6h8z

Go back to Fluorine Binding Sites List in 6h8z
Fluorine binding site 3 out of 3 in the T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of T16A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer Complexed with Magnesium Trifluoride to 1.6 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:27.8
occ:1.00
F3 A:MGF302 0.0 27.8 1.0
MG A:MGF302 1.9 38.2 1.0
N A:ALA115 2.6 22.4 1.0
O A:HOH467 2.6 30.6 1.0
NZ A:LYS145 2.7 26.1 1.0
OD1 A:ASP8 3.0 21.0 1.0
F1 A:MGF302 3.1 23.6 1.0
CB A:ALA115 3.2 23.2 1.0
F2 A:MGF302 3.3 25.9 1.0
CA A:ALA115 3.5 23.6 1.0
CE A:LYS145 3.5 26.7 1.0
C A:SER114 3.5 22.2 1.0
CA A:SER114 3.5 20.4 1.0
OG A:SER114 3.9 20.0 1.0
CD A:LYS145 4.0 28.0 1.0
CG A:ASP8 4.1 21.9 1.0
O A:HOH433 4.2 21.2 1.0
CB A:SER114 4.2 21.8 1.0
O A:ALA113 4.3 20.2 1.0
C A:ALA115 4.5 23.1 1.0
N A:SER116 4.5 23.5 1.0
OE2 A:GLU169 4.6 21.4 1.0
O A:SER114 4.7 21.6 1.0
OD2 A:ASP8 4.7 23.8 1.0
N A:SER114 4.7 21.1 1.0
MG A:MG301 4.7 21.7 1.0
O A:HOH454 4.9 28.6 1.0
C A:ALA113 5.0 22.1 1.0

Reference:

A.J.Robertson, C.Bisson, J.P.Waltho. Transition State of Phospho-Enzyme Hydrolysis in Beta-Phosphoglucomutase. To Be Published.
Page generated: Sun Dec 13 12:52:12 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy