Fluorine in PDB 6jbg: Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with 4'-Deoxy-4'-Fluoro Neamine Analog (Equatorial 4'-F)

The structure of Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with 4'-Deoxy-4'-Fluoro Neamine Analog (Equatorial 4'-F), PDB code: 6jbg was solved by H.Kanazawa, P.Auffinger, S.Hanessian, J.Kondo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.70 / 3.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	28.382, 83.720, 51.444, 90.00, 95.10, 90.00
R / Rfree (%)	16.1 / 22.5

The binding sites of Fluorine atom in the Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with 4'-Deoxy-4'-Fluoro Neamine Analog (Equatorial 4'-F) (pdb code 6jbg). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with 4'-Deoxy-4'-Fluoro Neamine Analog (Equatorial 4'-F), PDB code: 6jbg:

Fluorine binding site 1 out of 1 in the Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with 4'-Deoxy-4'-Fluoro Neamine Analog (Equatorial 4'-F)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with 4'-Deoxy-4'-Fluoro Neamine Analog (Equatorial 4'-F) within 5.0Å range: probe atom residue distance (Å) B Occ B:F301 b:45.7 occ:1.00 F99 B:S81301 0.0 45.7 1.0 C4 B:S81301 1.4 43.2 1.0 C3 B:S81301 2.3 40.6 1.0 C5 B:S81301 2.4 42.0 1.0 O23 B:S81301 2.7 41.7 1.0 C6 B:S81301 3.0 38.1 1.0 OP2 B:A41 3.1 37.3 1.0 C2' B:G39 3.5 36.8 1.0 O5' B:A40 3.6 38.4 1.0 C2 B:S81301 3.6 40.5 1.0 O5 B:S81301 3.6 39.1 1.0 P B:A41 3.8 40.2 1.0 OP1 B:A41 3.8 34.7 1.0 C3' B:G39 4.0 38.2 1.0 C1 B:S81301 4.1 40.2 1.0 O3' B:A40 4.1 38.1 1.0 O3' B:G39 4.2 43.6 1.0 O2' B:G39 4.2 37.1 1.0 C4 B:G39 4.3 41.8 1.0 N3 B:G39 4.3 39.2 1.0 N6 B:S81301 4.4 40.0 1.0 N9 B:G39 4.4 40.5 1.0 OP2 B:A40 4.4 44.6 1.0 P B:A40 4.4 45.2 1.0 O1 B:S81301 4.5 42.3 1.0 C5' B:A40 4.5 31.8 1.0 C1' B:G39 4.5 39.2 1.0 N2 B:S81301 4.7 44.5 1.0 C3' B:A40 4.8 36.1 1.0 C2 B:G39 4.8 37.0 1.0 C5 B:G39 4.8 42.3 1.0 C8 B:G39 5.0 40.5 1.0

J.Kondo, S.Hanessian, H.Kanazawa. Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with 4'-Deoxy-4'-Fluoro Neamine Analog (Axial 4'-F) To Be Published.