Fluorine in PDB 6juu: Crystal Structure of Zak in Complex with Compound 6R
Enzymatic activity of Crystal Structure of Zak in Complex with Compound 6R
All present enzymatic activity of Crystal Structure of Zak in Complex with Compound 6R:
2.7.11.25;
Protein crystallography data
The structure of Crystal Structure of Zak in Complex with Compound 6R, PDB code: 6juu
was solved by
L.L.Kong,
C.H.Yun,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.43 /
1.90
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
130.806,
48.509,
42.489,
90.00,
105.21,
90.00
|
R / Rfree (%)
|
16.6 /
21
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Zak in Complex with Compound 6R
(pdb code 6juu). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Crystal Structure of Zak in Complex with Compound 6R, PDB code: 6juu:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 6juu
Go back to
Fluorine Binding Sites List in 6juu
Fluorine binding site 1 out
of 2 in the Crystal Structure of Zak in Complex with Compound 6R
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Zak in Complex with Compound 6R within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:15.1
occ:1.00
|
F01
|
A:C9R401
|
0.0
|
15.1
|
1.0
|
C02
|
A:C9R401
|
1.4
|
13.6
|
1.0
|
C03
|
A:C9R401
|
2.3
|
11.6
|
1.0
|
C22
|
A:C9R401
|
2.4
|
14.4
|
1.0
|
N04
|
A:C9R401
|
2.6
|
13.8
|
1.0
|
N23
|
A:C9R401
|
2.7
|
14.4
|
1.0
|
N24
|
A:C9R401
|
2.8
|
15.3
|
1.0
|
N
|
A:ASP151
|
3.0
|
10.6
|
1.0
|
CB
|
A:CYS150
|
3.0
|
9.0
|
1.0
|
CA
|
A:CYS150
|
3.4
|
10.4
|
1.0
|
C18
|
A:C9R401
|
3.6
|
13.2
|
1.0
|
C
|
A:CYS150
|
3.6
|
12.1
|
1.0
|
C20
|
A:C9R401
|
3.6
|
12.7
|
1.0
|
C38
|
A:C9R401
|
3.7
|
10.3
|
1.0
|
SG
|
A:CYS150
|
3.7
|
12.8
|
1.0
|
N25
|
A:C9R401
|
3.9
|
16.2
|
1.0
|
CG2
|
A:ILE66
|
3.9
|
8.5
|
1.0
|
CA
|
A:ASP151
|
3.9
|
12.2
|
1.0
|
C19
|
A:C9R401
|
4.1
|
12.7
|
1.0
|
CE
|
A:LYS45
|
4.2
|
18.9
|
1.0
|
S05
|
A:C9R401
|
4.2
|
16.1
|
1.0
|
C26
|
A:C9R401
|
4.3
|
11.9
|
1.0
|
OD1
|
A:ASP151
|
4.3
|
28.0
|
1.0
|
CB
|
A:ASP151
|
4.5
|
14.4
|
1.0
|
F21
|
A:C9R401
|
4.7
|
12.7
|
1.0
|
CB
|
A:ILE66
|
4.7
|
10.5
|
1.0
|
O
|
A:CYS150
|
4.8
|
12.6
|
1.0
|
N
|
A:CYS150
|
4.8
|
9.0
|
1.0
|
CG
|
A:ASP151
|
4.8
|
23.8
|
1.0
|
NZ
|
A:LYS45
|
4.8
|
18.1
|
1.0
|
O16
|
A:C9R401
|
4.9
|
15.5
|
1.0
|
O17
|
A:C9R401
|
4.9
|
15.2
|
1.0
|
C07
|
A:C9R401
|
4.9
|
12.6
|
1.0
|
CG1
|
A:ILE66
|
5.0
|
10.5
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 6juu
Go back to
Fluorine Binding Sites List in 6juu
Fluorine binding site 2 out
of 2 in the Crystal Structure of Zak in Complex with Compound 6R
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Zak in Complex with Compound 6R within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:12.7
occ:1.00
|
F21
|
A:C9R401
|
0.0
|
12.7
|
1.0
|
C20
|
A:C9R401
|
1.4
|
12.7
|
1.0
|
C22
|
A:C9R401
|
2.3
|
14.4
|
1.0
|
C19
|
A:C9R401
|
2.4
|
12.7
|
1.0
|
N23
|
A:C9R401
|
2.8
|
14.4
|
1.0
|
C38
|
A:C9R401
|
3.1
|
10.3
|
1.0
|
N
|
A:LYS45
|
3.4
|
12.8
|
1.0
|
OG1
|
A:THR82
|
3.5
|
14.4
|
1.0
|
O
|
A:ALA43
|
3.5
|
12.0
|
1.0
|
CB
|
A:ALA43
|
3.6
|
9.0
|
1.0
|
C
|
A:ALA43
|
3.6
|
13.6
|
1.0
|
C02
|
A:C9R401
|
3.6
|
13.6
|
1.0
|
CB
|
A:LYS45
|
3.6
|
11.7
|
1.0
|
C18
|
A:C9R401
|
3.7
|
13.2
|
1.0
|
O
|
A:ILE80
|
3.8
|
10.8
|
1.0
|
N24
|
A:C9R401
|
3.8
|
15.3
|
1.0
|
N
|
A:VAL44
|
3.8
|
11.7
|
1.0
|
C
|
A:VAL44
|
3.8
|
14.2
|
1.0
|
CG2
|
A:THR82
|
4.0
|
9.3
|
1.0
|
CG1
|
A:VAL30
|
4.0
|
12.9
|
1.0
|
CA
|
A:LYS45
|
4.0
|
14.5
|
1.0
|
CA
|
A:VAL44
|
4.1
|
10.8
|
1.0
|
C03
|
A:C9R401
|
4.1
|
11.6
|
1.0
|
C26
|
A:C9R401
|
4.2
|
11.9
|
1.0
|
CA
|
A:ALA43
|
4.2
|
13.8
|
1.0
|
CB
|
A:THR82
|
4.3
|
11.3
|
1.0
|
CG2
|
A:VAL30
|
4.3
|
17.8
|
1.0
|
N
|
A:THR82
|
4.4
|
9.8
|
1.0
|
N25
|
A:C9R401
|
4.5
|
16.2
|
1.0
|
O
|
A:VAL44
|
4.6
|
15.9
|
1.0
|
C
|
A:ILE80
|
4.7
|
12.6
|
1.0
|
F01
|
A:C9R401
|
4.7
|
15.1
|
1.0
|
CE
|
A:LYS45
|
4.7
|
18.9
|
1.0
|
CB
|
A:VAL30
|
4.8
|
16.0
|
1.0
|
CA
|
A:THR82
|
4.9
|
11.8
|
1.0
|
CG
|
A:LYS45
|
4.9
|
16.9
|
1.0
|
C
|
A:VAL81
|
5.0
|
13.5
|
1.0
|
|
Reference:
L.L.Kong,
C.H.Yun.
Crystal Structure of Zak in Complex with Compound 6R To Be Published.
Page generated: Sun Dec 13 12:54:46 2020
|