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Fluorine in PDB 6jyl: The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State

Other elements in 6jyl:

The structure of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State (pdb code 6jyl). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State, PDB code: 6jyl:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6jyl

Go back to Fluorine Binding Sites List in 6jyl
Fluorine binding site 1 out of 3 in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
K:F1202

b:1.0
occ:1.00
F1 K:BEF1202 0.0 1.0 1.0
BE K:BEF1202 1.7 1.0 1.0
F3 K:BEF1202 2.6 1.0 1.0
F2 K:BEF1202 2.8 1.0 1.0
MG K:MG1203 2.9 0.7 1.0
OE2 K:GLU325 2.9 0.6 1.0
O3B K:ADP1201 3.3 0.1 1.0
OD2 K:ASP324 3.6 0.1 1.0
OD1 K:ASP324 3.9 0.1 1.0
CD K:GLU325 4.1 0.6 1.0
O1B K:ADP1201 4.1 0.1 1.0
CG K:ASP324 4.2 0.1 1.0
PB K:ADP1201 4.2 0.1 1.0
CA K:GLY584 4.2 0.5 1.0
CE K:LYS227 4.5 0.8 1.0
NZ K:LYS227 4.6 0.8 1.0
CG K:GLU325 4.6 0.6 1.0
O K:LEU583 4.7 0.3 1.0
O1A K:ADP1201 4.9 0.1 1.0

Fluorine binding site 2 out of 3 in 6jyl

Go back to Fluorine Binding Sites List in 6jyl
Fluorine binding site 2 out of 3 in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
K:F1202

b:1.0
occ:1.00
F2 K:BEF1202 0.0 1.0 1.0
BE K:BEF1202 1.7 1.0 1.0
O1B K:ADP1201 2.5 0.1 1.0
F3 K:BEF1202 2.7 1.0 1.0
NH1 K:ARG614 2.8 0.1 1.0
F1 K:BEF1202 2.8 1.0 1.0
NH1 K:ARG611 2.9 0.5 1.0
PB K:ADP1201 3.6 0.1 1.0
CB K:MET223 3.6 0.1 1.0
O3B K:ADP1201 3.8 0.1 1.0
OE1 K:GLN607 3.8 0.1 1.0
CZ K:ARG611 4.1 0.5 1.0
CZ K:ARG614 4.1 0.1 1.0
N K:GLY224 4.2 0.5 1.0
MG K:MG1203 4.3 0.7 1.0
CA K:MET223 4.3 0.1 1.0
O2B K:ADP1201 4.4 0.1 1.0
CA K:GLY584 4.4 0.5 1.0
OE2 K:GLU325 4.4 0.6 1.0
NH2 K:ARG611 4.4 0.5 1.0
O1A K:ADP1201 4.5 0.1 1.0
NZ K:LYS227 4.7 0.8 1.0
CG K:MET223 4.7 0.1 1.0
NH2 K:ARG614 4.7 0.1 1.0
C K:MET223 4.7 0.1 1.0
O3A K:ADP1201 4.8 0.1 1.0
N K:GLY584 4.9 0.5 1.0
CD K:GLN607 4.9 0.1 1.0
SD K:MET223 5.0 0.1 1.0

Fluorine binding site 3 out of 3 in 6jyl

Go back to Fluorine Binding Sites List in 6jyl
Fluorine binding site 3 out of 3 in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
K:F1202

b:1.0
occ:1.00
F3 K:BEF1202 0.0 1.0 1.0
BE K:BEF1202 1.7 1.0 1.0
MG K:MG1203 2.4 0.7 1.0
F1 K:BEF1202 2.6 1.0 1.0
F2 K:BEF1202 2.7 1.0 1.0
O1A K:ADP1201 3.0 0.1 1.0
O K:GLY584 3.1 0.5 1.0
CA K:GLY584 3.2 0.5 1.0
O1B K:ADP1201 3.3 0.1 1.0
O3B K:ADP1201 3.4 0.1 1.0
C K:GLY584 3.5 0.5 1.0
NH1 K:ARG614 3.7 0.1 1.0
PB K:ADP1201 3.9 0.1 1.0
NH1 K:ARG611 4.1 0.5 1.0
PA K:ADP1201 4.2 0.1 1.0
NH2 K:ARG614 4.4 0.1 1.0
N K:GLY584 4.4 0.5 1.0
CZ K:ARG614 4.5 0.1 1.0
O3A K:ADP1201 4.6 0.1 1.0
N K:ILE585 4.7 0.8 1.0
O2A K:ADP1201 4.8 0.1 1.0
OE2 K:GLU325 4.8 0.6 1.0
O K:ILE585 4.8 0.8 1.0

Reference:

L.Yan, H.Wu, X.Li, N.Gao, Z.Chen. Structures of the Iswi-Nucleosome Complex Reveal A Conserved Mechanism of Chromatin Remodeling. Nat.Struct.Mol.Biol. V. 26 258 2019.
ISSN: ESSN 1545-9985
PubMed: 30872815
DOI: 10.1038/S41594-019-0199-9
Page generated: Thu Aug 1 21:44:25 2024

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