Fluorine in PDB 6lnz: uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex

Other elements in 6lnz:

The structure of uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex also contains other interesting chemical elements:

Platinum (Pt) 15 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex (pdb code 6lnz). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex, PDB code: 6lnz:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6lnz

Go back to Fluorine Binding Sites List in 6lnz
Fluorine binding site 1 out of 2 in the uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F101

b:0.0
occ:1.00
F2 A:EL9101 0.0 0.0 1.0
C5 A:EL9101 1.4 0.0 1.0
H8 A:EL9101 2.3 0.0 1.0
C4 A:EL9101 2.4 0.0 1.0
C6 A:EL9101 2.5 0.0 1.0
H4 A:EL9101 2.6 0.0 1.0
C8 A:EL9101 3.0 0.0 1.0
C7 A:EL9101 3.0 0.0 1.0
N7 A:DG21 3.6 0.0 1.0
C3 A:EL9101 3.6 0.0 1.0
N7 A:DG20 3.7 0.0 1.0
C1 A:EL9101 3.7 0.0 1.0
H22 A:DG16 3.8 0.0 1.0
C8 A:DG20 3.9 0.0 1.0
H8 A:DG20 4.0 0.0 1.0
C8 A:DG21 4.0 0.0 1.0
H8 A:DG21 4.1 0.0 1.0
C2 A:EL9101 4.1 0.0 1.0
H2' A:DG20 4.2 0.0 1.0
N2 A:DG16 4.2 0.0 1.0
C5 A:DG21 4.3 0.0 1.0
C5 A:DG20 4.3 0.0 1.0
C9 A:EL9101 4.3 0.0 1.0
N1 A:EL9101 4.4 0.0 1.0
H1 A:DG16 4.5 0.0 1.0
H21 A:DG16 4.5 0.0 1.0
N9 A:DG20 4.7 0.0 1.0
F1 A:EL9101 4.7 0.0 1.0
H9 A:EL9101 4.7 0.0 1.0
C2 A:DG16 4.8 0.0 1.0
C6 A:DG21 4.8 0.0 1.0
O6 A:DG21 4.8 0.0 1.0
N1 A:DG16 4.9 0.0 1.0
N9 A:DG21 4.9 0.0 1.0
C4 A:DG20 4.9 0.0 1.0
C6 A:DG20 4.9 0.0 1.0

Fluorine binding site 2 out of 2 in 6lnz

Go back to Fluorine Binding Sites List in 6lnz
Fluorine binding site 2 out of 2 in the uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of uc(Nmr) Solution Structure of Vegf G-Quadruplex Bound A Non-Planar Cyclometalated-Carbene Platinum(II) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F101

b:0.0
occ:1.00
F1 A:EL9101 0.0 0.0 1.0
C3 A:EL9101 1.4 0.0 1.0
C4 A:EL9101 2.4 0.0 1.0
C2 A:EL9101 2.4 0.0 1.0
H2 A:EL9101 2.6 0.0 1.0
H4 A:EL9101 2.6 0.0 1.0
H1' A:DG21 3.4 0.0 1.0
H9M A:EL9101 3.4 0.0 1.0
H15 A:EL9101 3.4 0.0 1.0
N3 A:DG20 3.5 0.0 1.0
C5 A:EL9101 3.6 0.0 1.0
C1 A:EL9101 3.7 0.0 1.0
O4' A:DG21 3.7 0.0 1.0
N9 A:DG21 3.7 0.0 1.0
C2 A:DG20 3.7 0.0 1.0
C4 A:DG21 3.8 0.0 1.0
C4 A:DG20 3.8 0.0 1.0
C1' A:DG21 3.8 0.0 1.0
N3 A:DG21 3.9 0.0 1.0
C15 A:EL9101 3.9 0.0 1.0
H2' A:DG20 4.0 0.0 1.0
C6 A:EL9101 4.2 0.0 1.0
N2 A:DG20 4.2 0.0 1.0
N1 A:DG20 4.2 0.0 1.0
C5 A:DG20 4.2 0.0 1.0
C8 A:DG21 4.3 0.0 1.0
H2'' A:DG20 4.3 0.0 1.0
H21 A:DG20 4.3 0.0 1.0
N9 A:DG20 4.3 0.0 1.0
C5 A:DG21 4.4 0.0 1.0
H9L A:EL9101 4.4 0.0 1.0
C6 A:DG20 4.5 0.0 1.0
C2' A:DG20 4.5 0.0 1.0
C2 A:DG21 4.6 0.0 1.0
H1' A:DG20 4.7 0.0 1.0
H22 A:DG20 4.7 0.0 1.0
H1 A:DG20 4.7 0.0 1.0
F2 A:EL9101 4.7 0.0 1.0
N7 A:DG21 4.8 0.0 1.0
C1' A:DG20 4.8 0.0 1.0
H8 A:DG21 4.8 0.0 1.0
C8 A:DG20 5.0 0.0 1.0

Reference:

B.C.Zhu, W.Liu, Z.W.Mao. Adaptive Binding, Solution Structure and Functional Regulation of Vegf G-Quadruplex Bound the Non-Planar Platinum(II) Complex To Be Published.
Page generated: Sun Jan 24 15:48:27 2021

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