Fluorine in PDB 6ltk: HSP90 in Complex with Snx-2112
Protein crystallography data
The structure of HSP90 in Complex with Snx-2112, PDB code: 6ltk
was solved by
H.L.Cao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.24 /
2.14
|
Space group
|
I 2 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.7,
88.868,
96.55,
90,
90,
90
|
R / Rfree (%)
|
19.1 /
22.3
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the HSP90 in Complex with Snx-2112
(pdb code 6ltk). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
HSP90 in Complex with Snx-2112, PDB code: 6ltk:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 6ltk
Go back to
Fluorine Binding Sites List in 6ltk
Fluorine binding site 1 out
of 3 in the HSP90 in Complex with Snx-2112
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of HSP90 in Complex with Snx-2112 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:49.3
occ:1.00
|
F1
|
A:E0G301
|
0.0
|
49.3
|
1.0
|
C23
|
A:E0G301
|
1.4
|
48.7
|
1.0
|
F3
|
A:E0G301
|
2.2
|
49.4
|
1.0
|
F2
|
A:E0G301
|
2.2
|
54.5
|
1.0
|
C14
|
A:E0G301
|
2.4
|
45.7
|
1.0
|
O1
|
A:E0G301
|
3.0
|
48.0
|
1.0
|
C15
|
A:E0G301
|
3.1
|
40.5
|
1.0
|
O
|
A:LEU107
|
3.2
|
56.0
|
1.0
|
C20
|
A:E0G301
|
3.4
|
52.1
|
1.0
|
N4
|
A:E0G301
|
3.4
|
43.6
|
1.0
|
CB
|
A:ALA111
|
3.5
|
55.6
|
1.0
|
C
|
A:LEU107
|
3.7
|
55.3
|
1.0
|
CB
|
A:LEU107
|
3.7
|
47.8
|
1.0
|
CA
|
A:LEU107
|
4.2
|
51.8
|
1.0
|
C16
|
A:E0G301
|
4.3
|
42.7
|
1.0
|
N
|
A:GLY108
|
4.4
|
47.1
|
1.0
|
N3
|
A:E0G301
|
4.4
|
48.4
|
1.0
|
CA
|
A:ALA111
|
4.5
|
72.0
|
1.0
|
O
|
A:GLY135
|
4.6
|
52.2
|
1.0
|
N
|
A:ALA111
|
4.7
|
61.4
|
1.0
|
CG
|
A:LEU107
|
4.7
|
50.0
|
1.0
|
CE2
|
A:TYR139
|
4.8
|
46.0
|
1.0
|
CD2
|
A:LEU107
|
4.8
|
46.2
|
1.0
|
CA
|
A:GLY108
|
4.8
|
59.0
|
1.0
|
C19
|
A:E0G301
|
4.9
|
42.9
|
1.0
|
CD1
|
A:LEU107
|
4.9
|
51.1
|
1.0
|
O
|
A:HOH441
|
4.9
|
45.7
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 6ltk
Go back to
Fluorine Binding Sites List in 6ltk
Fluorine binding site 2 out
of 3 in the HSP90 in Complex with Snx-2112
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of HSP90 in Complex with Snx-2112 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:54.5
occ:1.00
|
F2
|
A:E0G301
|
0.0
|
54.5
|
1.0
|
C23
|
A:E0G301
|
1.4
|
48.7
|
1.0
|
F3
|
A:E0G301
|
2.2
|
49.4
|
1.0
|
F1
|
A:E0G301
|
2.2
|
49.3
|
1.0
|
C14
|
A:E0G301
|
2.4
|
45.7
|
1.0
|
C15
|
A:E0G301
|
3.1
|
40.5
|
1.0
|
O1
|
A:E0G301
|
3.1
|
48.0
|
1.0
|
CE2
|
A:TYR139
|
3.4
|
46.0
|
1.0
|
N4
|
A:E0G301
|
3.4
|
43.6
|
1.0
|
C20
|
A:E0G301
|
3.5
|
52.1
|
1.0
|
O
|
A:HOH441
|
3.6
|
45.7
|
1.0
|
CD2
|
A:TYR139
|
3.7
|
44.8
|
1.0
|
CA
|
A:VAL136
|
3.8
|
49.1
|
1.0
|
O
|
A:GLY135
|
3.8
|
52.2
|
1.0
|
CB
|
A:ALA111
|
4.0
|
55.6
|
1.0
|
CG1
|
A:VAL136
|
4.1
|
53.0
|
1.0
|
CB
|
A:VAL136
|
4.2
|
51.4
|
1.0
|
C16
|
A:E0G301
|
4.3
|
42.7
|
1.0
|
CB
|
A:PHE138
|
4.4
|
41.8
|
1.0
|
C
|
A:VAL136
|
4.4
|
43.5
|
1.0
|
N3
|
A:E0G301
|
4.4
|
48.4
|
1.0
|
CZ
|
A:TYR139
|
4.5
|
47.6
|
1.0
|
C
|
A:GLY135
|
4.7
|
55.5
|
1.0
|
O
|
A:VAL136
|
4.7
|
46.9
|
1.0
|
N
|
A:VAL136
|
4.7
|
48.3
|
1.0
|
OH
|
A:TYR139
|
4.9
|
53.2
|
1.0
|
C19
|
A:E0G301
|
4.9
|
42.9
|
1.0
|
N
|
A:PHE138
|
5.0
|
42.1
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 6ltk
Go back to
Fluorine Binding Sites List in 6ltk
Fluorine binding site 3 out
of 3 in the HSP90 in Complex with Snx-2112
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of HSP90 in Complex with Snx-2112 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F301
b:49.4
occ:1.00
|
F3
|
A:E0G301
|
0.0
|
49.4
|
1.0
|
C23
|
A:E0G301
|
1.4
|
48.7
|
1.0
|
F1
|
A:E0G301
|
2.2
|
49.3
|
1.0
|
F2
|
A:E0G301
|
2.2
|
54.5
|
1.0
|
C14
|
A:E0G301
|
2.4
|
45.7
|
1.0
|
O
|
A:GLY135
|
2.7
|
52.2
|
1.0
|
N4
|
A:E0G301
|
2.7
|
43.6
|
1.0
|
O
|
A:HOH441
|
3.0
|
45.7
|
1.0
|
C15
|
A:E0G301
|
3.7
|
40.5
|
1.0
|
C
|
A:GLY135
|
3.9
|
55.5
|
1.0
|
O
|
A:HOH447
|
4.0
|
60.0
|
1.0
|
N3
|
A:E0G301
|
4.1
|
48.4
|
1.0
|
CA
|
A:VAL136
|
4.3
|
49.1
|
1.0
|
C16
|
A:E0G301
|
4.6
|
42.7
|
1.0
|
N
|
A:VAL136
|
4.6
|
48.3
|
1.0
|
O1
|
A:E0G301
|
4.6
|
48.0
|
1.0
|
CB
|
A:ALA111
|
4.6
|
55.6
|
1.0
|
C20
|
A:E0G301
|
4.7
|
52.1
|
1.0
|
CG1
|
A:VAL136
|
4.8
|
53.0
|
1.0
|
O
|
A:LEU107
|
4.9
|
56.0
|
1.0
|
|
Reference:
H.L.Cao,
H.L.Cao.
N/A N/A.
Page generated: Thu Aug 1 22:08:21 2024
|