Fluorine in PDB 6m5v: The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3

The structure of The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Zinc	(Zn)	2 atoms

The binding sites of Fluorine atom in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 (pdb code 6m5v). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3, PDB code: 6m5v:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:F802 b:58.9 occ:1.00 F1 A:BEF802 0.0 58.9 1.0 BE A:BEF802 1.8 58.9 1.0 F2 A:BEF802 3.1 58.9 1.0 F3 A:BEF802 3.1 58.9 1.0 NH1 A:ARG261 4.3 61.8 1.0

Fluorine binding site 2 out of 3 in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:F802 b:58.9 occ:1.00 F2 A:BEF802 0.0 58.9 1.0 BE A:BEF802 1.8 58.9 1.0 F1 A:BEF802 3.1 58.9 1.0 F3 A:BEF802 3.1 58.9 1.0 CB A:ARG260 3.2 61.8 1.0 O3B A:ADP801 3.5 64.4 1.0 N A:ARG261 3.7 61.8 1.0 NE A:ARG261 3.9 61.8 1.0 NH1 A:ARG261 3.9 61.8 1.0 C A:ARG260 4.1 61.8 1.0 CA A:ARG260 4.1 61.8 1.0 CB A:ARG261 4.2 61.8 1.0 CA A:ARG261 4.3 61.8 1.0 CZ A:ARG261 4.3 61.8 1.0 PB A:ADP801 4.9 64.4 1.0 CD A:ARG261 5.0 61.8 1.0 CG A:ARG261 5.0 61.8 1.0 O A:ARG260 5.0 61.8 1.0

Fluorine binding site 3 out of 3 in the The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Coordinate of the Hexameric Terminase Complex in the Presence of the Adp-BEF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:F802 b:58.9 occ:1.00 F3 A:BEF802 0.0 58.9 1.0 BE A:BEF802 1.8 58.9 1.0 F2 A:BEF802 3.1 58.9 1.0 F1 A:BEF802 3.1 58.9 1.0 O3B A:ADP801 3.5 64.4 1.0 MG A:MG803 4.6 53.4 1.0 CB A:ARG260 4.7 61.8 1.0 PB A:ADP801 4.8 64.4 1.0 NH1 A:ARG261 4.9 61.8 1.0 O1B A:ADP801 4.9 64.4 1.0

Y.Yang, P.Yang, N.Wang, Z.Chen, D.Su, Z.H.Zhou, Z.Rao, X.Wang. Architecture of the Herpesvirus Genome-Packaging Complex and Implications For Dna Translocation. Protein Cell V. 11 339 2020.
ISSN: ESSN 1674-8018
PubMed: 32328903
DOI: 10.1007/S13238-020-00710-0