Fluorine in PDB 6n0q: Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Enzymatic activity of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
All present enzymatic activity of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.:
2.7.11.1;
Protein crystallography data
The structure of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide., PDB code: 6n0q
was solved by
M.Mamo,
B.A.Appleton,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
51.53 /
2.04
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
94.320,
94.320,
162.340,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.1 /
21.3
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
(pdb code 6n0q). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide., PDB code: 6n0q:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 6n0q
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Fluorine Binding Sites List in 6n0q
Fluorine binding site 1 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:43.2
occ:0.54
|
F29
|
A:K7S801
|
0.0
|
43.2
|
0.5
|
F29
|
A:K7S801
|
0.6
|
56.0
|
0.5
|
C28
|
A:K7S801
|
1.1
|
56.2
|
0.5
|
C28
|
A:K7S801
|
1.3
|
42.6
|
0.5
|
F31
|
A:K7S801
|
1.6
|
55.5
|
0.5
|
F30
|
A:K7S801
|
2.1
|
56.6
|
0.5
|
F31
|
A:K7S801
|
2.1
|
41.0
|
0.5
|
F30
|
A:K7S801
|
2.1
|
42.9
|
0.5
|
C25
|
A:K7S801
|
2.3
|
55.8
|
0.5
|
C25
|
A:K7S801
|
2.4
|
40.8
|
0.5
|
C26
|
A:K7S801
|
3.0
|
54.4
|
0.5
|
C26
|
A:K7S801
|
3.2
|
37.6
|
0.5
|
C24
|
A:K7S801
|
3.3
|
56.2
|
0.5
|
C24
|
A:K7S801
|
3.4
|
41.3
|
0.5
|
CD2
|
A:LEU567
|
3.7
|
27.2
|
1.0
|
CG2
|
A:ILE513
|
4.2
|
23.3
|
1.0
|
CD1
|
A:LEU567
|
4.3
|
27.4
|
1.0
|
CD2
|
A:LEU505
|
4.3
|
37.5
|
1.0
|
C21
|
A:K7S801
|
4.4
|
53.9
|
0.5
|
C21
|
A:K7S801
|
4.4
|
36.4
|
0.5
|
CG1
|
A:VAL504
|
4.5
|
35.0
|
1.0
|
C23
|
A:K7S801
|
4.6
|
56.1
|
0.5
|
C23
|
A:K7S801
|
4.6
|
41.1
|
0.5
|
CG2
|
A:THR508
|
4.6
|
24.4
|
1.0
|
CG
|
A:LEU567
|
4.7
|
26.9
|
1.0
|
CG2
|
A:ILE572
|
4.8
|
28.9
|
1.0
|
C22
|
A:K7S801
|
5.0
|
55.5
|
0.5
|
|
Fluorine binding site 2 out
of 12 in 6n0q
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Fluorine Binding Sites List in 6n0q
Fluorine binding site 2 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:56.0
occ:0.46
|
F29
|
A:K7S801
|
0.0
|
56.0
|
0.5
|
F29
|
A:K7S801
|
0.6
|
43.2
|
0.5
|
C28
|
A:K7S801
|
1.3
|
56.2
|
0.5
|
C28
|
A:K7S801
|
1.6
|
42.6
|
0.5
|
F30
|
A:K7S801
|
2.1
|
42.9
|
0.5
|
F31
|
A:K7S801
|
2.1
|
55.5
|
0.5
|
F30
|
A:K7S801
|
2.1
|
56.6
|
0.5
|
C25
|
A:K7S801
|
2.4
|
55.8
|
0.5
|
C25
|
A:K7S801
|
2.5
|
40.8
|
0.5
|
F31
|
A:K7S801
|
2.6
|
41.0
|
0.5
|
C24
|
A:K7S801
|
3.2
|
56.2
|
0.5
|
C24
|
A:K7S801
|
3.2
|
41.3
|
0.5
|
C26
|
A:K7S801
|
3.3
|
54.4
|
0.5
|
C26
|
A:K7S801
|
3.4
|
37.6
|
0.5
|
CD2
|
A:LEU567
|
3.6
|
27.2
|
1.0
|
CG1
|
A:VAL504
|
3.9
|
35.0
|
1.0
|
CG2
|
A:ILE572
|
4.3
|
28.9
|
1.0
|
CD2
|
A:LEU505
|
4.3
|
37.5
|
1.0
|
CD1
|
A:LEU567
|
4.4
|
27.4
|
1.0
|
CG2
|
A:THR508
|
4.4
|
24.4
|
1.0
|
C23
|
A:K7S801
|
4.5
|
56.1
|
0.5
|
C23
|
A:K7S801
|
4.5
|
41.1
|
0.5
|
C21
|
A:K7S801
|
4.5
|
53.9
|
0.5
|
CG2
|
A:ILE513
|
4.6
|
23.3
|
1.0
|
C21
|
A:K7S801
|
4.6
|
36.4
|
0.5
|
CG
|
A:LEU567
|
4.7
|
26.9
|
1.0
|
CD1
|
A:ILE572
|
4.8
|
28.2
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 6n0q
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Fluorine Binding Sites List in 6n0q
Fluorine binding site 3 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:42.9
occ:0.54
|
F30
|
A:K7S801
|
0.0
|
42.9
|
0.5
|
F30
|
A:K7S801
|
0.3
|
56.6
|
0.5
|
C28
|
A:K7S801
|
1.3
|
42.6
|
0.5
|
C28
|
A:K7S801
|
1.4
|
56.2
|
0.5
|
F29
|
A:K7S801
|
2.1
|
56.0
|
0.5
|
F31
|
A:K7S801
|
2.1
|
41.0
|
0.5
|
F29
|
A:K7S801
|
2.1
|
43.2
|
0.5
|
F31
|
A:K7S801
|
2.3
|
55.5
|
0.5
|
C25
|
A:K7S801
|
2.3
|
55.8
|
0.5
|
C25
|
A:K7S801
|
2.4
|
40.8
|
0.5
|
C24
|
A:K7S801
|
2.8
|
56.2
|
0.5
|
C24
|
A:K7S801
|
2.9
|
41.3
|
0.5
|
C26
|
A:K7S801
|
3.6
|
54.4
|
0.5
|
C26
|
A:K7S801
|
3.6
|
37.6
|
0.5
|
CD2
|
A:HIS574
|
3.8
|
29.9
|
1.0
|
CG2
|
A:ILE572
|
3.8
|
28.9
|
1.0
|
CD1
|
A:LEU567
|
3.9
|
27.4
|
1.0
|
C23
|
A:K7S801
|
4.1
|
56.1
|
0.5
|
CG
|
A:HIS574
|
4.2
|
28.9
|
1.0
|
C23
|
A:K7S801
|
4.3
|
41.1
|
0.5
|
CD2
|
A:LEU567
|
4.3
|
27.2
|
1.0
|
NE2
|
A:HIS574
|
4.4
|
29.7
|
1.0
|
CA
|
A:HIS574
|
4.4
|
25.9
|
1.0
|
CG1
|
A:VAL504
|
4.5
|
35.0
|
1.0
|
CB
|
A:HIS574
|
4.5
|
26.2
|
1.0
|
C21
|
A:K7S801
|
4.7
|
53.9
|
0.5
|
CG
|
A:LEU567
|
4.8
|
26.9
|
1.0
|
C21
|
A:K7S801
|
4.8
|
36.4
|
0.5
|
C22
|
A:K7S801
|
4.9
|
55.5
|
0.5
|
ND1
|
A:HIS574
|
5.0
|
30.2
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 6n0q
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Fluorine Binding Sites List in 6n0q
Fluorine binding site 4 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:56.6
occ:0.46
|
F30
|
A:K7S801
|
0.0
|
56.6
|
0.5
|
F30
|
A:K7S801
|
0.3
|
42.9
|
0.5
|
C28
|
A:K7S801
|
1.3
|
42.6
|
0.5
|
C28
|
A:K7S801
|
1.3
|
56.2
|
0.5
|
F31
|
A:K7S801
|
1.9
|
41.0
|
0.5
|
F29
|
A:K7S801
|
2.1
|
43.2
|
0.5
|
F31
|
A:K7S801
|
2.1
|
55.5
|
0.5
|
F29
|
A:K7S801
|
2.1
|
56.0
|
0.5
|
C25
|
A:K7S801
|
2.4
|
55.8
|
0.5
|
C25
|
A:K7S801
|
2.5
|
40.8
|
0.5
|
C24
|
A:K7S801
|
2.9
|
56.2
|
0.5
|
C24
|
A:K7S801
|
3.0
|
41.3
|
0.5
|
C26
|
A:K7S801
|
3.6
|
54.4
|
0.5
|
CD2
|
A:HIS574
|
3.6
|
29.9
|
1.0
|
C26
|
A:K7S801
|
3.6
|
37.6
|
0.5
|
CD1
|
A:LEU567
|
3.8
|
27.4
|
1.0
|
CG2
|
A:ILE572
|
4.0
|
28.9
|
1.0
|
CG
|
A:HIS574
|
4.1
|
28.9
|
1.0
|
NE2
|
A:HIS574
|
4.2
|
29.7
|
1.0
|
CD2
|
A:LEU567
|
4.3
|
27.2
|
1.0
|
C23
|
A:K7S801
|
4.3
|
56.1
|
0.5
|
CA
|
A:HIS574
|
4.4
|
25.9
|
1.0
|
C23
|
A:K7S801
|
4.4
|
41.1
|
0.5
|
CB
|
A:HIS574
|
4.4
|
26.2
|
1.0
|
CG
|
A:LEU567
|
4.7
|
26.9
|
1.0
|
CG1
|
A:VAL504
|
4.7
|
35.0
|
1.0
|
C21
|
A:K7S801
|
4.7
|
53.9
|
0.5
|
C21
|
A:K7S801
|
4.8
|
36.4
|
0.5
|
ND1
|
A:HIS574
|
4.9
|
30.2
|
1.0
|
CE1
|
A:HIS574
|
4.9
|
29.8
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 6n0q
Go back to
Fluorine Binding Sites List in 6n0q
Fluorine binding site 5 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:41.0
occ:0.54
|
F31
|
A:K7S801
|
0.0
|
41.0
|
0.5
|
F31
|
A:K7S801
|
0.7
|
55.5
|
0.5
|
C28
|
A:K7S801
|
1.4
|
42.6
|
0.5
|
C28
|
A:K7S801
|
1.5
|
56.2
|
0.5
|
F30
|
A:K7S801
|
1.9
|
56.6
|
0.5
|
F30
|
A:K7S801
|
2.1
|
42.9
|
0.5
|
F29
|
A:K7S801
|
2.1
|
43.2
|
0.5
|
C25
|
A:K7S801
|
2.4
|
55.8
|
0.5
|
C25
|
A:K7S801
|
2.4
|
40.8
|
0.5
|
F29
|
A:K7S801
|
2.6
|
56.0
|
0.5
|
C26
|
A:K7S801
|
2.8
|
54.4
|
0.5
|
C26
|
A:K7S801
|
2.8
|
37.6
|
0.5
|
CD2
|
A:HIS574
|
3.4
|
29.9
|
1.0
|
C24
|
A:K7S801
|
3.6
|
56.2
|
0.5
|
NE2
|
A:HIS574
|
3.6
|
29.7
|
1.0
|
C24
|
A:K7S801
|
3.7
|
41.3
|
0.5
|
C
|
A:GLY593
|
3.8
|
34.0
|
1.0
|
CA
|
A:GLY593
|
3.8
|
28.0
|
1.0
|
O
|
A:GLY593
|
4.0
|
32.6
|
1.0
|
CG2
|
A:ILE592
|
4.0
|
26.8
|
1.0
|
C21
|
A:K7S801
|
4.1
|
53.9
|
0.5
|
CD1
|
A:LEU567
|
4.1
|
27.4
|
1.0
|
C21
|
A:K7S801
|
4.2
|
36.4
|
0.5
|
N
|
A:ASP594
|
4.2
|
35.3
|
1.0
|
N
|
A:GLY593
|
4.3
|
28.4
|
1.0
|
O
|
A:ILE592
|
4.3
|
29.0
|
1.0
|
C
|
A:ILE592
|
4.4
|
30.8
|
1.0
|
CG
|
A:HIS574
|
4.4
|
28.9
|
1.0
|
CE1
|
A:HIS574
|
4.7
|
29.8
|
1.0
|
C23
|
A:K7S801
|
4.7
|
56.1
|
0.5
|
CB
|
A:ASP594
|
4.8
|
39.5
|
1.0
|
C23
|
A:K7S801
|
4.8
|
41.1
|
0.5
|
CD2
|
A:LEU567
|
4.8
|
27.2
|
1.0
|
O27
|
A:K7S801
|
4.9
|
49.9
|
0.5
|
C22
|
A:K7S801
|
4.9
|
55.5
|
0.5
|
O27
|
A:K7S801
|
4.9
|
27.6
|
0.5
|
|
Fluorine binding site 6 out
of 12 in 6n0q
Go back to
Fluorine Binding Sites List in 6n0q
Fluorine binding site 6 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:55.5
occ:0.46
|
F31
|
A:K7S801
|
0.0
|
55.5
|
0.5
|
F31
|
A:K7S801
|
0.7
|
41.0
|
0.5
|
C28
|
A:K7S801
|
1.3
|
42.6
|
0.5
|
C28
|
A:K7S801
|
1.4
|
56.2
|
0.5
|
F29
|
A:K7S801
|
1.6
|
43.2
|
0.5
|
F29
|
A:K7S801
|
2.1
|
56.0
|
0.5
|
F30
|
A:K7S801
|
2.1
|
56.6
|
0.5
|
F30
|
A:K7S801
|
2.3
|
42.9
|
0.5
|
C25
|
A:K7S801
|
2.4
|
55.8
|
0.5
|
C25
|
A:K7S801
|
2.5
|
40.8
|
0.5
|
C26
|
A:K7S801
|
2.8
|
54.4
|
0.5
|
C26
|
A:K7S801
|
2.8
|
37.6
|
0.5
|
C24
|
A:K7S801
|
3.7
|
56.2
|
0.5
|
C24
|
A:K7S801
|
3.8
|
41.3
|
0.5
|
CA
|
A:GLY593
|
3.9
|
28.0
|
1.0
|
O
|
A:ILE592
|
4.0
|
29.0
|
1.0
|
CD2
|
A:HIS574
|
4.1
|
29.9
|
1.0
|
CD1
|
A:LEU567
|
4.1
|
27.4
|
1.0
|
C21
|
A:K7S801
|
4.2
|
53.9
|
0.5
|
C
|
A:GLY593
|
4.2
|
34.0
|
1.0
|
C21
|
A:K7S801
|
4.2
|
36.4
|
0.5
|
CG2
|
A:ILE592
|
4.2
|
26.8
|
1.0
|
NE2
|
A:HIS574
|
4.4
|
29.7
|
1.0
|
C
|
A:ILE592
|
4.4
|
30.8
|
1.0
|
CD2
|
A:LEU567
|
4.4
|
27.2
|
1.0
|
CG2
|
A:ILE513
|
4.4
|
23.3
|
1.0
|
N
|
A:GLY593
|
4.4
|
28.4
|
1.0
|
O
|
A:GLY593
|
4.5
|
32.6
|
1.0
|
N
|
A:ASP594
|
4.6
|
35.3
|
1.0
|
C23
|
A:K7S801
|
4.8
|
56.1
|
0.5
|
O27
|
A:K7S801
|
4.9
|
49.9
|
0.5
|
C23
|
A:K7S801
|
4.9
|
41.1
|
0.5
|
CG
|
A:LEU567
|
4.9
|
26.9
|
1.0
|
O27
|
A:K7S801
|
4.9
|
27.6
|
0.5
|
CD2
|
A:LEU505
|
5.0
|
37.5
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 6n0q
Go back to
Fluorine Binding Sites List in 6n0q
Fluorine binding site 7 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F801
b:51.0
occ:0.41
|
F29
|
B:K7S801
|
0.0
|
51.0
|
0.4
|
F29
|
B:K7S801
|
0.6
|
41.7
|
0.6
|
C28
|
B:K7S801
|
1.3
|
49.9
|
0.4
|
C28
|
B:K7S801
|
1.4
|
40.0
|
0.6
|
F30
|
B:K7S801
|
1.9
|
41.5
|
0.6
|
F31
|
B:K7S801
|
2.1
|
47.7
|
0.4
|
F30
|
B:K7S801
|
2.1
|
50.7
|
0.4
|
C25
|
B:K7S801
|
2.4
|
38.3
|
0.6
|
F31
|
B:K7S801
|
2.4
|
36.5
|
0.6
|
C25
|
B:K7S801
|
2.4
|
49.2
|
0.4
|
C24
|
B:K7S801
|
3.1
|
37.8
|
0.6
|
C26
|
B:K7S801
|
3.2
|
47.5
|
0.4
|
C24
|
B:K7S801
|
3.3
|
49.0
|
0.4
|
C26
|
B:K7S801
|
3.3
|
34.7
|
0.6
|
CD2
|
B:LEU567
|
3.6
|
26.8
|
1.0
|
CD1
|
B:LEU567
|
4.1
|
28.2
|
1.0
|
CG1
|
B:VAL504
|
4.1
|
32.8
|
1.0
|
CG2
|
B:ILE572
|
4.3
|
29.0
|
1.0
|
CD2
|
B:LEU505
|
4.4
|
33.6
|
1.0
|
C23
|
B:K7S801
|
4.4
|
35.7
|
0.6
|
C21
|
B:K7S801
|
4.5
|
46.1
|
0.4
|
CG
|
B:LEU567
|
4.5
|
27.0
|
1.0
|
CG2
|
B:THR508
|
4.5
|
21.9
|
1.0
|
C21
|
B:K7S801
|
4.5
|
32.5
|
0.6
|
CG2
|
B:ILE513
|
4.5
|
23.3
|
1.0
|
C23
|
B:K7S801
|
4.5
|
48.1
|
0.4
|
C22
|
B:K7S801
|
5.0
|
33.7
|
0.6
|
|
Fluorine binding site 8 out
of 12 in 6n0q
Go back to
Fluorine Binding Sites List in 6n0q
Fluorine binding site 8 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F801
b:41.7
occ:0.58
|
F29
|
B:K7S801
|
0.0
|
41.7
|
0.6
|
F29
|
B:K7S801
|
0.6
|
51.0
|
0.4
|
C28
|
B:K7S801
|
1.3
|
40.0
|
0.6
|
C28
|
B:K7S801
|
1.4
|
49.9
|
0.4
|
F31
|
B:K7S801
|
1.8
|
47.7
|
0.4
|
F31
|
B:K7S801
|
2.1
|
36.5
|
0.6
|
F30
|
B:K7S801
|
2.2
|
41.5
|
0.6
|
F30
|
B:K7S801
|
2.4
|
50.7
|
0.4
|
C25
|
B:K7S801
|
2.4
|
38.3
|
0.6
|
C25
|
B:K7S801
|
2.5
|
49.2
|
0.4
|
C26
|
B:K7S801
|
3.1
|
47.5
|
0.4
|
C26
|
B:K7S801
|
3.1
|
34.7
|
0.6
|
C24
|
B:K7S801
|
3.4
|
37.8
|
0.6
|
C24
|
B:K7S801
|
3.5
|
49.0
|
0.4
|
CD2
|
B:LEU567
|
3.6
|
26.8
|
1.0
|
CD1
|
B:LEU567
|
4.1
|
28.2
|
1.0
|
CG2
|
B:ILE513
|
4.1
|
23.3
|
1.0
|
CD2
|
B:LEU505
|
4.3
|
33.6
|
1.0
|
C21
|
B:K7S801
|
4.4
|
46.1
|
0.4
|
C21
|
B:K7S801
|
4.4
|
32.5
|
0.6
|
CG
|
B:LEU567
|
4.5
|
27.0
|
1.0
|
C23
|
B:K7S801
|
4.6
|
35.7
|
0.6
|
CG2
|
B:THR508
|
4.6
|
21.9
|
1.0
|
CG1
|
B:VAL504
|
4.6
|
32.8
|
1.0
|
C23
|
B:K7S801
|
4.7
|
48.1
|
0.4
|
CG2
|
B:ILE572
|
4.8
|
29.0
|
1.0
|
C22
|
B:K7S801
|
5.0
|
33.7
|
0.6
|
|
Fluorine binding site 9 out
of 12 in 6n0q
Go back to
Fluorine Binding Sites List in 6n0q
Fluorine binding site 9 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F801
b:50.7
occ:0.41
|
F30
|
B:K7S801
|
0.0
|
50.7
|
0.4
|
F30
|
B:K7S801
|
0.2
|
41.5
|
0.6
|
C28
|
B:K7S801
|
1.3
|
49.9
|
0.4
|
C28
|
B:K7S801
|
1.5
|
40.0
|
0.6
|
F31
|
B:K7S801
|
2.1
|
47.7
|
0.4
|
F29
|
B:K7S801
|
2.1
|
51.0
|
0.4
|
F31
|
B:K7S801
|
2.1
|
36.5
|
0.6
|
F29
|
B:K7S801
|
2.4
|
41.7
|
0.6
|
C25
|
B:K7S801
|
2.4
|
49.2
|
0.4
|
C25
|
B:K7S801
|
2.4
|
38.3
|
0.6
|
C24
|
B:K7S801
|
2.9
|
49.0
|
0.4
|
C24
|
B:K7S801
|
2.9
|
37.8
|
0.6
|
C26
|
B:K7S801
|
3.6
|
47.5
|
0.4
|
C26
|
B:K7S801
|
3.7
|
34.7
|
0.6
|
CD2
|
B:HIS574
|
3.7
|
31.7
|
1.0
|
CD1
|
B:LEU567
|
3.7
|
28.2
|
1.0
|
CG2
|
B:ILE572
|
3.9
|
29.0
|
1.0
|
O
|
B:HOH946
|
4.0
|
61.6
|
1.0
|
CG
|
B:HIS574
|
4.0
|
30.2
|
1.0
|
CA
|
B:HIS574
|
4.2
|
26.1
|
1.0
|
C23
|
B:K7S801
|
4.2
|
35.7
|
0.6
|
C23
|
B:K7S801
|
4.2
|
48.1
|
0.4
|
NE2
|
B:HIS574
|
4.3
|
32.0
|
1.0
|
CB
|
B:HIS574
|
4.3
|
26.8
|
1.0
|
CD2
|
B:LEU567
|
4.4
|
26.8
|
1.0
|
O
|
B:HOH1026
|
4.4
|
76.1
|
1.0
|
CG
|
B:LEU567
|
4.7
|
27.0
|
1.0
|
ND1
|
B:HIS574
|
4.7
|
32.9
|
1.0
|
C21
|
B:K7S801
|
4.8
|
46.1
|
0.4
|
CG1
|
B:VAL504
|
4.8
|
32.8
|
1.0
|
C21
|
B:K7S801
|
4.8
|
32.5
|
0.6
|
CE1
|
B:HIS574
|
4.8
|
32.4
|
1.0
|
O
|
B:HIS574
|
4.9
|
28.8
|
1.0
|
O
|
B:ILE573
|
5.0
|
27.0
|
1.0
|
N
|
B:HIS574
|
5.0
|
25.9
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 6n0q
Go back to
Fluorine Binding Sites List in 6n0q
Fluorine binding site 10 out
of 12 in the Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Braf in Complex with N-(4-Methyl-3-(1-Methyl-2-Oxo-2,3-Dihydro-1H- Benzo[D]Imidazol-5-Yl)Phenyl)-3-(Trifluoromethyl)Benzamide. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F801
b:41.5
occ:0.58
|
F30
|
B:K7S801
|
0.0
|
41.5
|
0.6
|
F30
|
B:K7S801
|
0.2
|
50.7
|
0.4
|
C28
|
B:K7S801
|
1.2
|
49.9
|
0.4
|
C28
|
B:K7S801
|
1.3
|
40.0
|
0.6
|
F29
|
B:K7S801
|
1.9
|
51.0
|
0.4
|
F31
|
B:K7S801
|
2.0
|
47.7
|
0.4
|
F31
|
B:K7S801
|
2.1
|
36.5
|
0.6
|
F29
|
B:K7S801
|
2.2
|
41.7
|
0.6
|
C25
|
B:K7S801
|
2.3
|
49.2
|
0.4
|
C25
|
B:K7S801
|
2.4
|
38.3
|
0.6
|
C24
|
B:K7S801
|
2.9
|
37.8
|
0.6
|
C24
|
B:K7S801
|
2.9
|
49.0
|
0.4
|
C26
|
B:K7S801
|
3.5
|
47.5
|
0.4
|
C26
|
B:K7S801
|
3.6
|
34.7
|
0.6
|
CD1
|
B:LEU567
|
3.7
|
28.2
|
1.0
|
CD2
|
B:HIS574
|
3.8
|
31.7
|
1.0
|
CG2
|
B:ILE572
|
3.8
|
29.0
|
1.0
|
O
|
B:HOH946
|
4.2
|
61.6
|
1.0
|
CG
|
B:HIS574
|
4.2
|
30.2
|
1.0
|
CD2
|
B:LEU567
|
4.2
|
26.8
|
1.0
|
C23
|
B:K7S801
|
4.2
|
35.7
|
0.6
|
C23
|
B:K7S801
|
4.3
|
48.1
|
0.4
|
CA
|
B:HIS574
|
4.4
|
26.1
|
1.0
|
NE2
|
B:HIS574
|
4.4
|
32.0
|
1.0
|
O
|
B:HOH1026
|
4.5
|
76.1
|
1.0
|
CB
|
B:HIS574
|
4.5
|
26.8
|
1.0
|
CG
|
B:LEU567
|
4.6
|
27.0
|
1.0
|
CG1
|
B:VAL504
|
4.7
|
32.8
|
1.0
|
C21
|
B:K7S801
|
4.7
|
46.1
|
0.4
|
C21
|
B:K7S801
|
4.8
|
32.5
|
0.6
|
ND1
|
B:HIS574
|
4.9
|
32.9
|
1.0
|
|
Reference:
S.Ramurthy,
B.R.Taft,
R.J.Aversa,
P.A.Barsanti,
M.T.Burger,
Y.Lou,
G.A.Nishiguchi,
A.Rico,
L.Setti,
A.Smith,
S.Subramanian,
V.Tamez,
H.Tanner,
L.Wan,
C.Hu,
B.A.Appleton,
M.Mamo,
L.Tandeske,
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ISSN: ISSN 0022-2623
PubMed: 31059256
DOI: 10.1021/ACS.JMEDCHEM.9B00161
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