Atomistry » Fluorine » PDB 6ngq-6no8 » 6njo
Atomistry »
  Fluorine »
    PDB 6ngq-6no8 »
      6njo »

Fluorine in PDB 6njo: Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System

Other elements in 6njo:

The structure of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Aluminium (Al) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System (pdb code 6njo). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System, PDB code: 6njo:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 1 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:39.2
occ:1.00
 F1 B:AF3602 0.0 39.2 1.0
AL B:AF3602 1.7 36.9 1.0
F2 B:AF3602 2.9 34.8 1.0
F3 B:AF3602 3.0 35.2 1.0
O1B B:ADP600 3.0 35.6 1.0
O B:HOH1003 3.1 27.8 1.0
NZ B:LYS183 3.2 25.1 1.0
CD2 B:LEU321 3.4 25.7 1.0
OG A:SER337 3.5 34.1 1.0
CG B:LEU321 3.6 25.2 1.0
CA B:SER179 3.8 29.0 1.0
CB B:SER179 3.9 29.3 1.0
CE B:LYS183 4.1 24.7 1.0
PB B:ADP600 4.1 32.6 1.0
N B:GLY180 4.2 28.7 1.0
CB A:SER337 4.2 34.1 1.0
CB B:LEU321 4.4 24.9 1.0
O B:GLY178 4.4 26.9 1.0
NH2 B:ARG270 4.4 23.9 1.0
CA A:SER337 4.5 34.7 1.0
C B:SER179 4.5 29.4 1.0
O3B B:ADP600 4.6 36.4 1.0
O A:SER337 4.6 35.1 1.0
O2B B:ADP600 4.6 33.5 1.0
CD1 B:LEU321 4.8 25.5 1.0
N B:SER179 4.8 28.5 1.0

Fluorine binding site 2 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 2 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:34.8
occ:1.00
 F2 B:AF3602 0.0 34.8 1.0
AL B:AF3602 1.7 36.9 1.0
MG B:MG601 2.5 28.3 1.0
O2B B:ADP600 2.6 33.5 1.0
O1B B:ADP600 2.8 35.6 1.0
F3 B:AF3602 2.9 35.2 1.0
O B:HOH1001 2.9 34.2 1.0
F1 B:AF3602 2.9 39.2 1.0
PB B:ADP600 3.1 32.6 1.0
O B:HOH1002 3.4 30.2 1.0
O B:HOH1003 3.5 27.8 1.0
NZ B:LYS183 3.7 25.1 1.0
OE1 B:GLU206 3.7 30.8 1.0
O3B B:ADP600 4.1 36.4 1.0
OG B:SER184 4.1 28.6 1.0
CD B:GLU206 4.3 30.4 1.0
OE2 B:GLU206 4.4 30.1 1.0
O3A B:ADP600 4.5 33.9 1.0
NH2 B:ARG207 4.5 37.1 1.0
NH1 B:ARG207 4.5 38.0 1.0
NH2 A:ARG366 4.7 37.3 1.0
O A:SER337 4.8 35.1 1.0
OE2 B:GLU210 4.9 38.5 1.0
CZ B:ARG207 4.9 37.5 1.0

Fluorine binding site 3 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 3 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:35.2
occ:1.00
 F3 B:AF3602 0.0 35.2 1.0
AL B:AF3602 1.7 36.9 1.0
O A:SER337 2.8 35.1 1.0
F2 B:AF3602 2.9 34.8 1.0
NH1 B:ARG207 2.9 38.0 1.0
O1B B:ADP600 3.0 35.6 1.0
F1 B:AF3602 3.0 39.2 1.0
NH2 A:ARG366 3.4 37.3 1.0
NH1 A:ARG366 3.4 37.3 1.0
C A:SER337 3.5 35.1 1.0
CA A:SER337 3.5 34.7 1.0
CZ A:ARG366 3.8 37.5 1.0
OG A:SER337 3.9 34.1 1.0
CZ B:ARG207 4.0 37.5 1.0
O A:ARG336 4.1 40.8 1.0
NH2 B:ARG207 4.2 37.1 1.0
PB B:ADP600 4.2 32.6 1.0
N B:GLY180 4.2 28.7 1.0
CB A:SER337 4.3 34.1 1.0
O2B B:ADP600 4.4 33.5 1.0
O B:HOH1003 4.5 27.8 1.0
O B:HOH1001 4.6 34.2 1.0
N A:SER337 4.6 35.0 1.0
CB B:SER179 4.7 29.3 1.0
N A:ILE338 4.7 33.1 1.0
CA B:GLY180 4.8 29.2 1.0
C A:ARG336 4.8 40.8 1.0
O A:LEU339 4.9 33.8 1.0
O3A B:ADP600 4.9 33.9 1.0
CA B:SER179 5.0 29.0 1.0
C B:SER179 5.0 29.4 1.0

Fluorine binding site 4 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 4 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:24.1
occ:1.00
 F1 C:AF3602 0.0 24.1 1.0
AL C:AF3602 1.7 21.8 1.0
O C:HOH1003 2.6 21.9 1.0
NZ C:LYS183 2.7 12.9 1.0
F2 C:AF3602 2.9 19.7 1.0
F3 C:AF3602 3.0 20.1 1.0
O3B C:ADP600 3.3 20.2 1.0
CD1 C:LEU321 3.4 12.2 1.0
CD2 C:LEU321 3.5 12.3 1.0
CE C:LYS183 3.8 12.9 1.0
CG C:LEU321 3.8 12.3 1.0
CB C:LEU321 4.0 12.0 1.0
PB C:ADP600 4.0 17.2 1.0
OG C:SER267 4.1 16.4 1.0
O1B C:ADP600 4.2 21.0 1.0
OE2 C:GLU206 4.2 21.0 1.0
O2B C:ADP600 4.3 18.1 1.0
O C:GLY178 4.3 14.3 1.0
CA C:SER179 4.4 16.7 1.0
CB B:SER337 4.5 16.1 1.0
MG C:MG601 4.7 15.7 1.0
N C:GLY180 4.7 16.6 1.0
O C:HOH1002 4.7 22.4 1.0
NH2 C:ARG270 4.9 14.2 1.0
CD C:GLU206 4.9 21.0 1.0
CB C:SER179 4.9 16.9 1.0
CD C:LYS183 4.9 12.7 1.0
OE1 C:GLU206 4.9 21.4 1.0

Fluorine binding site 5 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 5 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:19.7
occ:1.00
 F2 C:AF3602 0.0 19.7 1.0
AL C:AF3602 1.7 21.8 1.0
O2B C:ADP600 2.5 18.1 1.0
O C:HOH1003 2.6 21.9 1.0
O3B C:ADP600 2.7 20.2 1.0
MG C:MG601 2.8 15.7 1.0
F3 C:AF3602 2.9 20.1 1.0
F1 C:AF3602 2.9 24.1 1.0
O C:HOH1001 3.0 19.8 1.0
PB C:ADP600 3.1 17.2 1.0
NH1 C:ARG207 3.3 22.6 1.0
OE1 C:GLU206 3.7 21.4 1.0
NH2 B:ARG366 3.9 21.2 1.0
O C:HOH1002 4.1 22.4 1.0
CD C:GLU206 4.1 21.0 1.0
O1B C:ADP600 4.1 21.0 1.0
OE2 C:GLU206 4.3 21.0 1.0
NZ C:LYS183 4.3 12.9 1.0
O3A C:ADP600 4.3 18.4 1.0
CZ C:ARG207 4.4 22.6 1.0
NH2 C:ARG207 4.5 22.7 1.0
OG C:SER184 4.6 16.4 1.0
O B:SER337 4.7 15.9 1.0
CZ B:ARG366 4.8 21.2 1.0
OE2 C:GLU210 4.8 28.4 1.0
NH1 B:ARG366 4.8 21.7 1.0

Fluorine binding site 6 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 6 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:20.1
occ:1.00
 F3 C:AF3602 0.0 20.1 1.0
AL C:AF3602 1.7 21.8 1.0
F2 C:AF3602 2.9 19.7 1.0
CA B:SER337 2.9 16.2 1.0
O C:HOH1003 2.9 21.9 1.0
O3B C:ADP600 2.9 20.2 1.0
O B:SER337 3.0 15.9 1.0
F1 C:AF3602 3.0 24.1 1.0
CB B:SER337 3.1 16.1 1.0
C B:SER337 3.2 16.2 1.0
NH1 B:ARG366 3.6 21.7 1.0
NH2 C:ARG207 3.7 22.7 1.0
N C:GLY180 3.9 16.6 1.0
NH2 B:ARG366 3.9 21.2 1.0
NH1 C:ARG207 4.1 22.6 1.0
CB C:SER179 4.1 16.9 1.0
N B:SER337 4.1 16.5 1.0
O B:ARG336 4.2 17.5 1.0
CZ B:ARG366 4.2 21.2 1.0
CA C:SER179 4.3 16.7 1.0
OG B:SER337 4.3 16.2 1.0
PB C:ADP600 4.3 17.2 1.0
CZ C:ARG207 4.4 22.6 1.0
N B:ILE338 4.4 16.1 1.0
C C:SER179 4.5 16.8 1.0
C B:ARG336 4.6 17.9 1.0
O2B C:ADP600 4.6 18.1 1.0
CA C:GLY180 4.8 16.7 1.0
OE1 C:GLU206 5.0 21.4 1.0

Fluorine binding site 7 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 7 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F602

b:24.9
occ:1.00
 F1 D:AF3602 0.0 24.9 1.0
AL D:AF3602 1.7 22.6 1.0
O D:HOH1003 2.5 24.3 1.0
F2 D:AF3602 2.9 20.4 1.0
F3 D:AF3602 3.0 20.8 1.0
NZ D:LYS183 3.1 13.7 1.0
CD1 D:LEU321 3.1 12.6 1.0
CD2 D:LEU321 3.4 13.0 1.0
O3B D:ADP600 3.4 18.7 1.0
CG D:LEU321 3.7 13.0 1.0
CB C:SER337 3.8 15.1 1.0
CB D:LEU321 4.1 12.9 1.0
N D:GLY180 4.1 14.7 1.0
CA D:SER179 4.1 15.4 1.0
CE D:LYS183 4.2 13.9 1.0
O D:GLY178 4.2 14.1 1.0
OG D:SER179 4.4 15.1 1.0
NH2 D:ARG270 4.5 14.3 1.0
CA C:SER337 4.5 14.9 1.0
OE2 D:GLU206 4.6 21.9 1.0
PB D:ADP600 4.6 15.7 1.0
C D:SER179 4.7 15.2 1.0
O C:SER337 4.8 14.7 1.0
CB D:SER179 4.8 15.3 1.0
OG C:SER337 4.8 15.1 1.0
OG D:SER267 4.9 17.8 1.0
O1B D:ADP600 4.9 19.5 1.0

Fluorine binding site 8 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 8 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F602

b:20.4
occ:1.00
 F2 D:AF3602 0.0 20.4 1.0
AL D:AF3602 1.7 22.6 1.0
O D:HOH1003 2.4 24.3 1.0
MG D:MG601 2.5 15.4 1.0
F3 D:AF3602 2.9 20.8 1.0
F1 D:AF3602 2.9 24.9 1.0
O3B D:ADP600 2.9 18.7 1.0
OE1 D:GLU206 2.9 22.0 1.0
O2B D:ADP600 3.2 16.5 1.0
CD D:GLU206 3.4 21.7 1.0
OE2 D:GLU206 3.4 21.9 1.0
PB D:ADP600 3.5 15.7 1.0
O D:HOH1002 3.6 18.2 1.0
O D:HOH1001 3.9 17.8 1.0
NZ D:LYS183 4.0 13.7 1.0
NH2 D:ARG207 4.1 24.8 1.0
NH1 D:ARG207 4.3 24.0 1.0
O1B D:ADP600 4.4 19.5 1.0
NH2 C:ARG366 4.5 17.1 1.0
OG D:SER184 4.6 16.6 1.0
OG D:SER267 4.6 17.8 1.0
CZ D:ARG207 4.7 24.3 1.0
O C:SER337 4.7 14.7 1.0
CG D:GLU206 4.7 21.2 1.0
OE2 D:GLU210 5.0 26.6 1.0

Fluorine binding site 9 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 9 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F602

b:20.8
occ:1.00
 F3 D:AF3602 0.0 20.8 1.0
AL D:AF3602 1.7 22.6 1.0
F2 D:AF3602 2.9 20.4 1.0
F1 D:AF3602 3.0 24.9 1.0
NH1 D:ARG207 3.0 24.0 1.0
O D:HOH1003 3.0 24.3 1.0
O3B D:ADP600 3.1 18.7 1.0
CA C:SER337 3.1 14.9 1.0
O C:SER337 3.1 14.7 1.0
NH1 C:ARG366 3.2 17.0 1.0
NH2 C:ARG366 3.4 17.1 1.0
C C:SER337 3.4 14.8 1.0
CB C:SER337 3.5 15.1 1.0
CZ C:ARG366 3.7 17.0 1.0
N D:GLY180 3.9 14.7 1.0
CZ D:ARG207 4.1 24.3 1.0
O C:ARG336 4.1 12.9 1.0
NH2 D:ARG207 4.2 24.8 1.0
N C:SER337 4.3 14.9 1.0
OG D:SER179 4.3 15.1 1.0
CA D:GLY180 4.4 14.6 1.0
PB D:ADP600 4.4 15.7 1.0
N C:ILE338 4.5 13.6 1.0
C C:ARG336 4.6 13.3 1.0
O2B D:ADP600 4.7 16.5 1.0
OG C:SER337 4.7 15.1 1.0
OE1 D:GLU206 4.7 22.0 1.0
C D:SER179 4.8 15.2 1.0
MG D:MG601 5.0 15.4 1.0
CA D:SER179 5.0 15.4 1.0

Fluorine binding site 10 out of 12 in 6njo

Go back to Fluorine Binding Sites List in 6njo
Fluorine binding site 10 out of 12 in the Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of the Assembled Atpase Escn From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F602

b:29.2
occ:1.00
 F1 E:AF3602 0.0 29.2 1.0
AL E:AF3602 1.7 26.9 1.0
CD1 E:LEU321 2.0 22.6 1.0
O E:HOH1003 2.6 28.3 1.0
F2 E:AF3602 2.9 24.8 1.0
F3 E:AF3602 3.0 25.1 1.0
CG E:LEU321 3.1 22.8 1.0
NZ E:LYS183 3.4 20.2 1.0
CB D:SER337 3.8 16.6 1.0
O3B E:ADP600 3.9 27.0 1.0
CD2 E:LEU321 3.9 22.5 1.0
O2B E:ADP600 4.0 27.8 1.0
O E:GLY178 4.2 20.2 1.0
CB E:LEU321 4.2 23.4 1.0
CE E:LYS183 4.3 20.6 1.0
CA E:SER179 4.3 20.9 1.0
OG E:SER267 4.4 26.2 1.0
OG E:SER179 4.4 21.0 1.0
PB E:ADP600 4.5 23.9 1.0
CA D:SER337 4.5 16.3 1.0
N E:GLY180 4.6 20.1 1.0
OE2 E:GLU206 4.6 26.8 1.0
O D:SER337 4.7 16.7 1.0
OG D:SER337 4.8 16.6 1.0
CB E:SER179 4.8 20.6 1.0
O E:HOH1002 4.8 25.5 1.0
NH1 E:ARG270 4.8 22.4 1.0
OE1 E:GLU206 4.9 26.1 1.0

Reference:

D.D.Majewski, L.J.Worrall, C.Hong, C.E.Atkinson, M.Vuckovic, N.Watanabe, Z.Yu, N.C.J.Strynadka. Cryo-Em Structure of the Homohexameric T3SS Atpase-Central Stalk Complex Reveals Rotary Atpase-Like Asymmetry. Nat Commun V. 10 626 2019.
ISSN: ESSN 2041-1723
PubMed: 30733444
DOI: 10.1038/S41467-019-08477-7
Page generated: Thu Aug 1 23:04:22 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy