Fluorine in PDB 6njp: Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System

Other elements in 6njp:

The structure of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Aluminium (Al) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System (pdb code 6njp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System, PDB code: 6njp:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 6njp

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Fluorine binding site 1 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:41.8
occ:1.00
 F1 B:AF3602 0.0 41.8 1.0
AL B:AF3602 1.7 43.5 1.0
F3 B:AF3602 2.9 41.4 1.0
F2 B:AF3602 3.0 45.8 1.0
O1B B:ADP600 3.0 35.6 1.0
O A:SER337 3.1 35.1 1.0
CA A:SER337 3.2 34.7 1.0
NH1 A:ARG366 3.4 37.3 1.0
NH1 B:ARG207 3.4 38.0 1.0
C A:SER337 3.5 35.1 1.0
O A:ARG336 3.6 40.8 1.0
NH2 A:ARG366 3.6 37.3 1.0
N B:GLY180 3.7 28.7 1.0
O B:HOH1003 3.9 35.5 1.0
CZ A:ARG366 3.9 37.5 1.0
OG A:SER337 3.9 34.1 1.0
CB A:SER337 4.0 34.1 1.0
N A:SER337 4.2 35.0 1.0
PB B:ADP600 4.3 32.6 1.0
CA B:GLY180 4.3 29.2 1.0
C A:ARG336 4.3 40.8 1.0
C B:SER179 4.3 29.4 1.0
CB B:SER179 4.4 29.3 1.0
CA B:SER179 4.4 29.0 1.0
O2B B:ADP600 4.4 33.5 1.0
CZ B:ARG207 4.5 37.5 1.0
N A:ILE338 4.7 33.1 1.0
NH2 B:ARG207 4.7 37.1 1.0
O3A B:ADP600 5.0 33.9 1.0
O A:LEU339 5.0 33.8 1.0

Fluorine binding site 2 out of 12 in 6njp

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Fluorine binding site 2 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:45.8
occ:1.00
 F2 B:AF3602 0.0 45.8 1.0
AL B:AF3602 1.7 43.5 1.0
O B:HOH1003 2.6 35.5 1.0
NZ B:LYS183 2.9 25.1 1.0
F3 B:AF3602 2.9 41.4 1.0
O1B B:ADP600 2.9 35.6 1.0
F1 B:AF3602 3.0 41.8 1.0
CD2 B:LEU321 3.5 25.7 1.0
CG B:LEU321 3.8 25.2 1.0
CE B:LYS183 3.9 24.7 1.0
PB B:ADP600 3.9 32.6 1.0
OG A:SER337 4.1 34.1 1.0
CA B:SER179 4.2 29.0 1.0
N B:GLY180 4.2 28.7 1.0
O B:GLY178 4.3 26.9 1.0
O2B B:ADP600 4.3 33.5 1.0
O3B B:ADP600 4.4 36.4 1.0
CB B:LEU321 4.4 24.9 1.0
O B:HOH1002 4.5 50.0 1.0
CB B:SER179 4.7 29.3 1.0
MG B:MG601 4.7 33.0 1.0
CB A:SER337 4.8 34.1 1.0
C B:SER179 4.8 29.4 1.0
O A:SER337 4.8 35.1 1.0
OG B:SER267 4.9 23.4 1.0
CA A:SER337 4.9 34.7 1.0

Fluorine binding site 3 out of 12 in 6njp

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Fluorine binding site 3 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:41.4
occ:1.00
 F3 B:AF3602 0.0 41.4 1.0
AL B:AF3602 1.7 43.5 1.0
O2B B:ADP600 2.4 33.5 1.0
MG B:MG601 2.7 33.0 1.0
O1B B:ADP600 2.8 35.6 1.0
F1 B:AF3602 2.9 41.8 1.0
F2 B:AF3602 2.9 45.8 1.0
O B:HOH1003 3.0 35.5 1.0
O B:HOH1001 3.0 50.0 1.0
PB B:ADP600 3.0 32.6 1.0
NH2 B:ARG207 3.7 37.1 1.0
OE1 B:GLU206 3.9 30.8 1.0
O B:HOH1002 3.9 50.0 1.0
NH1 B:ARG207 4.0 38.0 1.0
NH2 A:ARG366 4.0 37.3 1.0
O3B B:ADP600 4.1 36.4 1.0
O3A B:ADP600 4.2 33.9 1.0
CZ B:ARG207 4.3 37.5 1.0
OG B:SER184 4.3 28.6 1.0
NZ B:LYS183 4.4 25.1 1.0
O B:HOH1004 4.6 50.0 1.0
O A:SER337 4.6 35.1 1.0
O2A B:ADP600 4.7 30.5 1.0
CD B:GLU206 4.8 30.4 1.0
CZ A:ARG366 4.9 37.5 1.0

Fluorine binding site 4 out of 12 in 6njp

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Fluorine binding site 4 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:41.8
occ:1.00
 F1 C:AF3602 0.0 41.8 1.0
AL C:AF3602 1.7 43.5 1.0
F3 C:AF3602 2.9 41.4 1.0
CA B:SER337 2.9 16.2 1.0
O C:HOH1003 3.0 35.5 1.0
F2 C:AF3602 3.0 45.8 1.0
NH1 B:ARG366 3.2 21.7 1.0
O B:SER337 3.2 15.9 1.0
NH2 B:ARG366 3.3 21.2 1.0
O3B C:ADP600 3.3 20.2 1.0
C B:SER337 3.4 16.2 1.0
CB B:SER337 3.4 16.1 1.0
NH2 C:ARG207 3.6 22.7 1.0
CZ B:ARG366 3.7 21.2 1.0
CB C:SER179 3.7 16.9 1.0
N C:GLY180 3.8 16.6 1.0
O B:ARG336 3.8 17.5 1.0
N B:SER337 4.0 16.5 1.0
CA C:SER179 4.1 16.7 1.0
C C:SER179 4.3 16.8 1.0
NH1 C:ARG207 4.3 22.6 1.0
C B:ARG336 4.3 17.9 1.0
CZ C:ARG207 4.4 22.6 1.0
N B:ILE338 4.5 16.1 1.0
CA C:GLY180 4.5 16.7 1.0
PB C:ADP600 4.6 17.2 1.0
OG C:SER179 4.6 16.9 1.0
OG B:SER337 4.7 16.2 1.0
O2B C:ADP600 4.7 18.1 1.0

Fluorine binding site 5 out of 12 in 6njp

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Fluorine binding site 5 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:45.8
occ:1.00
 F2 C:AF3602 0.0 45.8 1.0
AL C:AF3602 1.7 43.5 1.0
O C:HOH1003 2.6 35.5 1.0
NZ C:LYS183 2.8 12.9 1.0
F3 C:AF3602 2.9 41.4 1.0
F1 C:AF3602 3.0 41.8 1.0
O3B C:ADP600 3.2 20.2 1.0
CD2 C:LEU321 3.8 12.3 1.0
CD1 C:LEU321 3.9 12.2 1.0
CE C:LYS183 4.0 12.9 1.0
CA C:SER179 4.1 16.7 1.0
PB C:ADP600 4.2 17.2 1.0
CB C:SER179 4.2 16.9 1.0
CG C:LEU321 4.3 12.3 1.0
OG C:SER267 4.4 16.4 1.0
O2B C:ADP600 4.4 18.1 1.0
CB C:LEU321 4.4 12.0 1.0
O C:HOH1002 4.4 50.0 1.0
CB B:SER337 4.5 16.1 1.0
MG C:MG601 4.5 33.0 1.0
N C:GLY180 4.5 16.6 1.0
O1B C:ADP600 4.7 21.0 1.0
OE2 C:GLU206 4.8 21.0 1.0
O C:GLY178 4.8 14.3 1.0
C C:SER179 4.9 16.8 1.0
O B:SER337 4.9 15.9 1.0
CA B:SER337 5.0 16.2 1.0
CD C:LYS183 5.0 12.7 1.0

Fluorine binding site 6 out of 12 in 6njp

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Fluorine binding site 6 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:41.4
occ:1.00
 F3 C:AF3602 0.0 41.4 1.0
AL C:AF3602 1.7 43.5 1.0
MG C:MG601 2.6 33.0 1.0
O2B C:ADP600 2.6 18.1 1.0
O C:HOH1003 2.8 35.5 1.0
F1 C:AF3602 2.9 41.8 1.0
F2 C:AF3602 2.9 45.8 1.0
O3B C:ADP600 3.0 20.2 1.0
O C:HOH1001 3.1 50.0 1.0
NH1 C:ARG207 3.2 22.6 1.0
NH2 B:ARG366 3.2 21.2 1.0
PB C:ADP600 3.3 17.2 1.0
OE1 C:GLU206 3.8 21.4 1.0
O C:HOH1002 4.1 50.0 1.0
CZ C:ARG207 4.1 22.6 1.0
NH2 C:ARG207 4.2 22.7 1.0
OE2 C:GLU210 4.4 28.4 1.0
CZ B:ARG366 4.4 21.2 1.0
OG C:SER184 4.4 16.4 1.0
O3A C:ADP600 4.4 18.4 1.0
O1B C:ADP600 4.5 21.0 1.0
CD C:GLU206 4.5 21.0 1.0
O B:SER337 4.6 15.9 1.0
NZ C:LYS183 4.6 12.9 1.0
NH1 B:ARG366 4.6 21.7 1.0
OE2 C:GLU206 4.8 21.0 1.0
O2A C:ADP600 4.9 15.1 1.0

Fluorine binding site 7 out of 12 in 6njp

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Fluorine binding site 7 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F602

b:41.8
occ:1.00
 F1 D:AF3602 0.0 41.8 1.0
AL D:AF3602 1.7 43.5 1.0
F3 D:AF3602 2.9 41.4 1.0
NH1 C:ARG366 3.0 17.0 1.0
CA C:SER337 3.0 14.9 1.0
F2 D:AF3602 3.0 45.8 1.0
O D:HOH1003 3.2 35.5 1.0
O3B D:ADP600 3.3 18.7 1.0
O C:SER337 3.4 14.7 1.0
NH2 C:ARG366 3.5 17.1 1.0
C C:SER337 3.5 14.8 1.0
N D:GLY180 3.5 14.7 1.0
CB C:SER337 3.5 15.1 1.0
OG D:SER179 3.6 15.1 1.0
O C:ARG336 3.6 12.9 1.0
CZ C:ARG366 3.7 17.0 1.0
NH1 D:ARG207 4.0 24.0 1.0
CA D:GLY180 4.0 14.6 1.0
N C:SER337 4.0 14.9 1.0
C C:ARG336 4.2 13.3 1.0
C D:SER179 4.2 15.2 1.0
CA D:SER179 4.5 15.4 1.0
NH2 D:ARG207 4.5 24.8 1.0
PB D:ADP600 4.6 15.7 1.0
CB D:SER179 4.6 15.3 1.0
N C:ILE338 4.7 13.6 1.0
CZ D:ARG207 4.7 24.3 1.0
O2B D:ADP600 4.8 16.5 1.0
OG C:SER337 4.9 15.1 1.0
NE C:ARG366 5.0 16.9 1.0

Fluorine binding site 8 out of 12 in 6njp

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Fluorine binding site 8 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F602

b:45.8
occ:1.00
 F2 D:AF3602 0.0 45.8 1.0
AL D:AF3602 1.7 43.5 1.0
O D:HOH1003 2.3 35.5 1.0
F3 D:AF3602 2.9 41.4 1.0
F1 D:AF3602 3.0 41.8 1.0
O3B D:ADP600 3.0 18.7 1.0
NZ D:LYS183 3.2 13.7 1.0
CD1 D:LEU321 3.6 12.6 1.0
N D:GLY180 4.0 14.7 1.0
PB D:ADP600 4.0 15.7 1.0
CD2 D:LEU321 4.1 13.0 1.0
CA D:SER179 4.3 15.4 1.0
O2B D:ADP600 4.3 16.5 1.0
CE D:LYS183 4.3 13.9 1.0
CG D:LEU321 4.4 13.0 1.0
O D:GLY178 4.4 14.1 1.0
O D:HOH1002 4.5 50.0 1.0
OG D:SER179 4.5 15.1 1.0
CB C:SER337 4.5 15.1 1.0
MG D:MG601 4.6 33.0 1.0
O1B D:ADP600 4.6 19.5 1.0
C D:SER179 4.7 15.2 1.0
CB D:LEU321 4.7 12.9 1.0
OE1 D:GLU206 4.9 22.0 1.0
OE2 D:GLU206 4.9 21.9 1.0
CB D:SER179 4.9 15.3 1.0
CA D:GLY180 4.9 14.6 1.0
CA C:SER337 5.0 14.9 1.0
NH2 D:ARG270 5.0 14.3 1.0
OG D:SER267 5.0 17.8 1.0

Fluorine binding site 9 out of 12 in 6njp

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Fluorine binding site 9 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F602

b:41.4
occ:1.00
 F3 D:AF3602 0.0 41.4 1.0
AL D:AF3602 1.7 43.5 1.0
MG D:MG601 2.5 33.0 1.0
O2B D:ADP600 2.7 16.5 1.0
F1 D:AF3602 2.9 41.8 1.0
F2 D:AF3602 2.9 45.8 1.0
O3B D:ADP600 2.9 18.7 1.0
O D:HOH1003 3.1 35.5 1.0
O D:HOH1001 3.2 50.0 1.0
NH2 D:ARG207 3.3 24.8 1.0
PB D:ADP600 3.3 15.7 1.0
NH2 C:ARG366 3.5 17.1 1.0
OE1 D:GLU206 3.8 22.0 1.0
O D:HOH1002 4.0 50.0 1.0
NH1 C:ARG366 4.2 17.0 1.0
CZ C:ARG366 4.2 17.0 1.0
CZ D:ARG207 4.3 24.3 1.0
O3A D:ADP600 4.3 16.9 1.0
OE2 D:GLU210 4.3 26.6 1.0
NH1 D:ARG207 4.4 24.0 1.0
OG D:SER184 4.5 16.6 1.0
O1B D:ADP600 4.6 19.5 1.0
CD D:GLU206 4.6 21.7 1.0
O C:SER337 4.7 14.7 1.0
O2A D:ADP600 4.7 13.6 1.0
N D:GLY180 4.9 14.7 1.0
NZ D:LYS183 5.0 13.7 1.0

Fluorine binding site 10 out of 12 in 6njp

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Fluorine binding site 10 out of 12 in the Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of the Assembled Atpase Escn in Complex with Its Central Stalk Esco From the Enteropathogenic E. Coli (Epec) Type III Secretion System within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F602

b:41.8
occ:1.00
 F1 E:AF3602 0.0 41.8 1.0
AL E:AF3602 1.7 43.5 1.0
F3 E:AF3602 2.9 41.4 1.0
F2 E:AF3602 3.0 45.8 1.0
CA D:SER337 3.0 16.3 1.0
O3B E:ADP600 3.2 27.0 1.0
O E:HOH1003 3.2 35.5 1.0
NH2 D:ARG366 3.3 19.9 1.0
CB D:SER337 3.3 16.6 1.0
NH1 D:ARG366 3.4 19.3 1.0
N E:GLY180 3.5 20.1 1.0
O D:SER337 3.5 16.7 1.0
C D:SER337 3.7 16.3 1.0
CZ D:ARG366 3.8 19.7 1.0
O D:ARG336 3.9 16.6 1.0
N D:SER337 4.1 15.9 1.0
CB E:SER179 4.1 20.6 1.0
CA E:SER179 4.1 20.9 1.0
NH1 E:ARG207 4.2 24.1 1.0
C E:SER179 4.2 20.4 1.0
CA E:GLY180 4.2 20.0 1.0
OG E:SER179 4.3 21.0 1.0
C D:ARG336 4.4 16.8 1.0
PB E:ADP600 4.6 23.9 1.0
OG D:SER337 4.7 16.6 1.0
NH2 E:ARG207 4.8 23.9 1.0
CD1 E:LEU321 4.9 22.6 1.0
N D:ILE338 5.0 15.5 1.0

Reference:

D.D.Majewski, L.J.Worrall, C.Hong, C.E.Atkinson, M.Vuckovic, N.Watanabe, Z.Yu, N.C.J.Strynadka. Cryo-Em Structure of the Homohexameric T3SS Atpase-Central Stalk Complex Reveals Rotary Atpase-Like Asymmetry. Nat Commun V. 10 626 2019.
ISSN: ESSN 2041-1723
PubMed: 30733444
DOI: 10.1038/S41467-019-08477-7
Page generated: Sun Dec 13 13:00:51 2020

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