Fluorine in PDB 6nqk: Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Protein crystallography data
The structure of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy), PDB code: 6nqk
was solved by
C.-Y.Lin,
M.G.Romei,
I.I.Mathews,
S.G.Boxer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.76 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.750,
86.480,
143.810,
90.00,
94.89,
90.00
|
R / Rfree (%)
|
19.5 /
22.2
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Fluorine atom in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
(pdb code 6nqk). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the
Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy), PDB code: 6nqk:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 1 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F63
b:44.1
occ:0.57
|
F
|
A:KZV63
|
0.0
|
44.1
|
0.6
|
CE1
|
A:KZV63
|
1.2
|
36.7
|
0.4
|
CE2
|
A:KZV63
|
1.4
|
36.5
|
0.6
|
CZ
|
A:KZV63
|
2.1
|
36.2
|
0.4
|
CD1
|
A:KZV63
|
2.3
|
35.9
|
0.4
|
CZ
|
A:KZV63
|
2.4
|
35.3
|
0.6
|
CD2
|
A:KZV63
|
2.4
|
35.8
|
0.6
|
OH
|
A:KZV63
|
2.5
|
34.4
|
0.4
|
OH
|
A:KZV63
|
2.8
|
30.1
|
0.6
|
CB
|
A:ILE195
|
2.8
|
38.9
|
1.0
|
CG2
|
A:ILE195
|
2.8
|
41.7
|
1.0
|
O
|
A:HOH315
|
2.9
|
35.0
|
1.0
|
CE2
|
A:KZV63
|
3.3
|
35.0
|
0.4
|
N
|
A:ILE195
|
3.3
|
37.7
|
1.0
|
CG2
|
A:KZV63
|
3.5
|
35.6
|
0.4
|
CE1
|
A:KZV63
|
3.6
|
35.2
|
0.6
|
CG2
|
A:KZV63
|
3.6
|
35.1
|
0.6
|
CA
|
A:ILE195
|
3.6
|
37.6
|
1.0
|
CB
|
A:HIS193
|
3.7
|
42.5
|
1.0
|
CD2
|
A:KZV63
|
3.9
|
35.1
|
0.4
|
CG1
|
A:ILE195
|
4.0
|
43.4
|
1.0
|
C
|
A:HIS194
|
4.0
|
35.6
|
1.0
|
CG
|
A:GLU211
|
4.1
|
47.0
|
1.0
|
CD1
|
A:KZV63
|
4.1
|
35.2
|
0.6
|
CD1
|
A:ILE195
|
4.1
|
38.1
|
1.0
|
N
|
A:HIS194
|
4.2
|
32.6
|
1.0
|
CG
|
A:HIS193
|
4.4
|
36.1
|
1.0
|
OE1
|
A:GLU211
|
4.4
|
49.5
|
1.0
|
CA
|
A:HIS194
|
4.4
|
33.2
|
1.0
|
ND1
|
A:HIS193
|
4.4
|
33.6
|
1.0
|
F
|
A:KZV63
|
4.4
|
32.3
|
0.4
|
CG2
|
A:THR59
|
4.5
|
34.3
|
1.0
|
CD
|
A:GLU211
|
4.5
|
48.7
|
1.0
|
C
|
A:HIS193
|
4.6
|
41.4
|
1.0
|
CA
|
A:HIS193
|
4.7
|
40.2
|
1.0
|
O
|
A:HOH323
|
4.8
|
33.1
|
1.0
|
O
|
A:HIS194
|
4.8
|
33.5
|
1.0
|
CB2
|
A:KZV63
|
4.8
|
38.4
|
0.4
|
C
|
A:ILE195
|
4.9
|
41.7
|
1.0
|
CB2
|
A:KZV63
|
4.9
|
38.3
|
0.6
|
N2
|
A:KZV63
|
5.0
|
36.4
|
0.4
|
N2
|
A:KZV63
|
5.0
|
36.2
|
0.6
|
OG
|
A:SER142
|
5.0
|
38.0
|
1.0
|
|
Fluorine binding site 2 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 2 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F63
b:32.3
occ:0.43
|
F
|
A:KZV63
|
0.0
|
32.3
|
0.4
|
CE1
|
A:KZV63
|
1.2
|
35.2
|
0.6
|
CE2
|
A:KZV63
|
1.4
|
35.0
|
0.4
|
CZ
|
A:KZV63
|
2.1
|
35.3
|
0.6
|
CD2
|
A:KZV63
|
2.4
|
35.1
|
0.4
|
CZ
|
A:KZV63
|
2.4
|
36.2
|
0.4
|
OH
|
A:KZV63
|
2.4
|
30.1
|
0.6
|
CD1
|
A:KZV63
|
2.4
|
35.2
|
0.6
|
OH
|
A:KZV63
|
2.8
|
34.4
|
0.4
|
OG
|
A:SER142
|
2.8
|
38.0
|
1.0
|
CE2
|
A:KZV63
|
3.4
|
36.5
|
0.6
|
CG2
|
A:KZV63
|
3.6
|
35.1
|
0.6
|
CE1
|
A:KZV63
|
3.6
|
36.7
|
0.4
|
CG2
|
A:KZV63
|
3.6
|
35.6
|
0.4
|
CG1
|
A:VAL157
|
3.7
|
41.5
|
1.0
|
CB
|
A:SER142
|
3.8
|
37.6
|
1.0
|
CD2
|
A:HIS193
|
3.9
|
31.6
|
1.0
|
CG2
|
A:VAL157
|
3.9
|
48.6
|
1.0
|
CE2
|
A:PHE173
|
3.9
|
41.0
|
1.0
|
CD2
|
A:KZV63
|
4.0
|
35.8
|
0.6
|
CG
|
A:HIS193
|
4.0
|
36.1
|
1.0
|
O
|
A:HOH323
|
4.0
|
33.1
|
1.0
|
CD2
|
A:PHE173
|
4.1
|
39.9
|
1.0
|
CD1
|
A:KZV63
|
4.1
|
35.9
|
0.4
|
CB
|
A:HIS193
|
4.2
|
42.5
|
1.0
|
CB
|
A:VAL157
|
4.3
|
51.2
|
1.0
|
F
|
A:KZV63
|
4.4
|
44.1
|
0.6
|
NE2
|
A:HIS193
|
4.5
|
38.6
|
1.0
|
ND1
|
A:HIS193
|
4.6
|
33.6
|
1.0
|
CB2
|
A:KZV63
|
4.9
|
38.4
|
0.4
|
CE1
|
A:HIS193
|
4.9
|
37.9
|
1.0
|
CB2
|
A:KZV63
|
4.9
|
38.3
|
0.6
|
CG2
|
A:THR159
|
4.9
|
30.9
|
1.0
|
CZ
|
A:PHE173
|
4.9
|
36.1
|
1.0
|
|
Fluorine binding site 3 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 3 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F63
b:40.9
occ:0.38
|
F
|
B:KZV63
|
0.0
|
40.9
|
0.4
|
CE1
|
B:KZV63
|
1.2
|
34.0
|
0.6
|
CE2
|
B:KZV63
|
1.4
|
34.4
|
0.4
|
CZ
|
B:KZV63
|
2.2
|
35.9
|
0.6
|
CD1
|
B:KZV63
|
2.3
|
34.9
|
0.6
|
CZ
|
B:KZV63
|
2.4
|
35.4
|
0.4
|
CD2
|
B:KZV63
|
2.4
|
35.0
|
0.4
|
OH
|
B:KZV63
|
2.6
|
36.8
|
0.6
|
OH
|
B:KZV63
|
2.8
|
34.4
|
0.4
|
CB
|
B:ILE195
|
2.8
|
35.7
|
1.0
|
CG2
|
B:ILE195
|
2.9
|
35.6
|
1.0
|
O
|
B:HOH326
|
3.0
|
29.4
|
1.0
|
N
|
B:ILE195
|
3.3
|
37.9
|
1.0
|
CE2
|
B:KZV63
|
3.4
|
36.4
|
0.6
|
CG2
|
B:KZV63
|
3.5
|
38.2
|
0.6
|
CA
|
B:ILE195
|
3.6
|
36.2
|
1.0
|
CB
|
B:HIS193
|
3.6
|
43.1
|
1.0
|
CE1
|
B:KZV63
|
3.6
|
36.1
|
0.4
|
CG2
|
B:KZV63
|
3.6
|
37.8
|
0.4
|
CD2
|
B:KZV63
|
3.9
|
37.8
|
0.6
|
CG
|
B:GLU211
|
3.9
|
46.6
|
1.0
|
C
|
B:HIS194
|
3.9
|
41.7
|
1.0
|
CG1
|
B:ILE195
|
4.0
|
36.5
|
1.0
|
N
|
B:HIS194
|
4.1
|
38.7
|
1.0
|
CD1
|
B:KZV63
|
4.1
|
37.6
|
0.4
|
CD1
|
B:ILE195
|
4.1
|
39.1
|
1.0
|
CG
|
B:HIS193
|
4.3
|
39.3
|
1.0
|
CA
|
B:HIS194
|
4.3
|
38.8
|
1.0
|
CD
|
B:GLU211
|
4.4
|
46.8
|
1.0
|
ND1
|
B:HIS193
|
4.4
|
39.2
|
1.0
|
OE1
|
B:GLU211
|
4.5
|
46.0
|
1.0
|
CG2
|
B:THR59
|
4.5
|
38.6
|
1.0
|
F
|
B:KZV63
|
4.5
|
37.9
|
0.6
|
C
|
B:HIS193
|
4.5
|
42.2
|
1.0
|
CA
|
B:HIS193
|
4.6
|
36.6
|
1.0
|
O
|
B:HIS194
|
4.7
|
45.1
|
1.0
|
CB2
|
B:KZV63
|
4.8
|
39.6
|
0.6
|
C
|
B:ILE195
|
4.9
|
38.1
|
1.0
|
O
|
B:HOH322
|
4.9
|
39.5
|
1.0
|
CB2
|
B:KZV63
|
4.9
|
38.8
|
0.4
|
N2
|
B:KZV63
|
4.9
|
34.0
|
0.6
|
N2
|
B:KZV63
|
5.0
|
34.8
|
0.4
|
|
Fluorine binding site 4 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 4 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F63
b:37.9
occ:0.62
|
F
|
B:KZV63
|
0.0
|
37.9
|
0.6
|
CE1
|
B:KZV63
|
1.3
|
36.1
|
0.4
|
CE2
|
B:KZV63
|
1.4
|
36.4
|
0.6
|
CZ
|
B:KZV63
|
2.2
|
35.4
|
0.4
|
CZ
|
B:KZV63
|
2.4
|
35.9
|
0.6
|
CD2
|
B:KZV63
|
2.4
|
37.8
|
0.6
|
CD1
|
B:KZV63
|
2.4
|
37.6
|
0.4
|
OH
|
B:KZV63
|
2.5
|
34.4
|
0.4
|
OH
|
B:KZV63
|
2.8
|
36.8
|
0.6
|
OG
|
B:SER142
|
2.9
|
37.7
|
1.0
|
CE2
|
B:KZV63
|
3.4
|
34.4
|
0.4
|
CG2
|
B:KZV63
|
3.6
|
37.8
|
0.4
|
CE1
|
B:KZV63
|
3.6
|
34.0
|
0.6
|
CG2
|
B:KZV63
|
3.6
|
38.2
|
0.6
|
CG1
|
B:VAL157
|
3.7
|
42.7
|
1.0
|
CG2
|
B:VAL157
|
3.7
|
44.7
|
1.0
|
CB
|
B:SER142
|
3.8
|
32.3
|
1.0
|
CE2
|
B:PHE173
|
3.9
|
38.6
|
1.0
|
CD2
|
B:HIS193
|
3.9
|
33.8
|
1.0
|
CD2
|
B:KZV63
|
4.0
|
35.0
|
0.4
|
O
|
B:HOH322
|
4.1
|
39.5
|
1.0
|
CG
|
B:HIS193
|
4.1
|
39.3
|
1.0
|
CD2
|
B:PHE173
|
4.1
|
36.2
|
1.0
|
CD1
|
B:KZV63
|
4.1
|
34.9
|
0.6
|
CB
|
B:VAL157
|
4.2
|
46.6
|
1.0
|
CB
|
B:HIS193
|
4.2
|
43.1
|
1.0
|
F
|
B:KZV63
|
4.5
|
40.9
|
0.4
|
NE2
|
B:HIS193
|
4.6
|
35.1
|
1.0
|
ND1
|
B:HIS193
|
4.8
|
39.2
|
1.0
|
CG2
|
B:THR159
|
4.8
|
30.7
|
1.0
|
CZ
|
B:PHE173
|
4.9
|
33.3
|
1.0
|
CB2
|
B:KZV63
|
4.9
|
39.6
|
0.6
|
CB2
|
B:KZV63
|
4.9
|
38.8
|
0.4
|
|
Fluorine binding site 5 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 5 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F63
b:24.5
occ:0.28
|
F
|
C:KZV63
|
0.0
|
24.5
|
0.3
|
CE1
|
C:KZV63
|
1.2
|
24.0
|
0.7
|
CE2
|
C:KZV63
|
1.4
|
28.6
|
0.3
|
CZ
|
C:KZV63
|
2.2
|
30.0
|
0.7
|
CD1
|
C:KZV63
|
2.3
|
32.0
|
0.7
|
CZ
|
C:KZV63
|
2.4
|
30.2
|
0.3
|
CD2
|
C:KZV63
|
2.4
|
31.0
|
0.3
|
OH
|
C:KZV63
|
2.6
|
31.2
|
0.7
|
OH
|
C:KZV63
|
2.8
|
31.3
|
0.3
|
CB
|
C:ILE195
|
2.8
|
30.0
|
1.0
|
CG2
|
C:ILE195
|
2.9
|
27.7
|
1.0
|
O
|
C:HOH352
|
3.1
|
33.1
|
1.0
|
N
|
C:ILE195
|
3.3
|
31.8
|
1.0
|
CE2
|
C:KZV63
|
3.5
|
32.2
|
0.7
|
CG2
|
C:KZV63
|
3.5
|
30.0
|
0.7
|
CA
|
C:ILE195
|
3.6
|
29.4
|
1.0
|
CE1
|
C:KZV63
|
3.6
|
31.1
|
0.3
|
CG2
|
C:KZV63
|
3.6
|
30.4
|
0.3
|
CB
|
C:HIS193
|
3.7
|
26.1
|
1.0
|
CG1
|
C:ILE195
|
3.9
|
32.6
|
1.0
|
CD2
|
C:KZV63
|
4.0
|
27.4
|
0.7
|
C
|
C:HIS194
|
4.0
|
38.0
|
1.0
|
CD1
|
C:ILE195
|
4.0
|
30.2
|
1.0
|
CG
|
C:GLU211
|
4.1
|
35.1
|
1.0
|
CD1
|
C:KZV63
|
4.1
|
29.3
|
0.3
|
N
|
C:HIS194
|
4.2
|
35.2
|
1.0
|
CG2
|
C:THR59
|
4.4
|
28.1
|
1.0
|
CG
|
C:HIS193
|
4.4
|
24.2
|
1.0
|
CA
|
C:HIS194
|
4.4
|
35.4
|
1.0
|
OE1
|
C:GLU211
|
4.5
|
35.9
|
1.0
|
ND1
|
C:HIS193
|
4.5
|
30.1
|
1.0
|
CD
|
C:GLU211
|
4.6
|
41.0
|
1.0
|
C
|
C:HIS193
|
4.6
|
29.5
|
1.0
|
F
|
C:KZV63
|
4.6
|
36.3
|
0.7
|
O
|
C:HOH319
|
4.7
|
32.5
|
1.0
|
CA
|
C:HIS193
|
4.7
|
32.5
|
1.0
|
O
|
C:HIS194
|
4.7
|
38.8
|
1.0
|
CB2
|
C:KZV63
|
4.8
|
33.5
|
0.7
|
C
|
C:ILE195
|
4.9
|
28.6
|
1.0
|
OG
|
C:SER142
|
4.9
|
29.4
|
1.0
|
CB2
|
C:KZV63
|
4.9
|
32.8
|
0.3
|
N2
|
C:KZV63
|
4.9
|
33.3
|
0.7
|
N2
|
C:KZV63
|
5.0
|
33.1
|
0.3
|
|
Fluorine binding site 6 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 6 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F63
b:36.3
occ:0.72
|
F
|
C:KZV63
|
0.0
|
36.3
|
0.7
|
CE1
|
C:KZV63
|
1.3
|
31.1
|
0.3
|
CE2
|
C:KZV63
|
1.4
|
32.2
|
0.7
|
CZ
|
C:KZV63
|
2.2
|
30.2
|
0.3
|
CD1
|
C:KZV63
|
2.3
|
29.3
|
0.3
|
CD2
|
C:KZV63
|
2.4
|
27.4
|
0.7
|
CZ
|
C:KZV63
|
2.4
|
30.0
|
0.7
|
OH
|
C:KZV63
|
2.6
|
31.3
|
0.3
|
OH
|
C:KZV63
|
2.8
|
31.2
|
0.7
|
OG
|
C:SER142
|
3.0
|
29.4
|
1.0
|
CG1
|
C:VAL157
|
3.4
|
34.1
|
1.0
|
CE2
|
C:KZV63
|
3.5
|
28.6
|
0.3
|
CG2
|
C:KZV63
|
3.6
|
30.4
|
0.3
|
CG2
|
C:KZV63
|
3.6
|
30.0
|
0.7
|
CE1
|
C:KZV63
|
3.6
|
24.0
|
0.7
|
CG2
|
C:VAL157
|
3.7
|
29.1
|
1.0
|
CE2
|
C:PHE173
|
3.8
|
34.8
|
1.0
|
CD2
|
C:PHE173
|
4.0
|
31.7
|
1.0
|
CB
|
C:SER142
|
4.0
|
29.5
|
1.0
|
CD2
|
C:HIS193
|
4.0
|
28.3
|
1.0
|
CD2
|
C:KZV63
|
4.0
|
31.0
|
0.3
|
CB
|
C:VAL157
|
4.1
|
35.0
|
1.0
|
CD1
|
C:KZV63
|
4.1
|
32.0
|
0.7
|
O
|
C:HOH319
|
4.2
|
32.5
|
1.0
|
CG
|
C:HIS193
|
4.2
|
24.2
|
1.0
|
CB
|
C:HIS193
|
4.4
|
26.1
|
1.0
|
F
|
C:KZV63
|
4.6
|
24.5
|
0.3
|
NE2
|
C:HIS193
|
4.6
|
33.5
|
1.0
|
CG2
|
C:THR159
|
4.6
|
30.7
|
1.0
|
CZ
|
C:PHE173
|
4.7
|
28.8
|
1.0
|
CB2
|
C:KZV63
|
4.8
|
32.8
|
0.3
|
CB2
|
C:KZV63
|
4.9
|
33.5
|
0.7
|
ND1
|
C:HIS193
|
4.9
|
30.1
|
1.0
|
CG
|
C:PHE173
|
4.9
|
28.5
|
1.0
|
|
Fluorine binding site 7 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 7 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F63
b:28.9
occ:0.32
|
F
|
D:KZV63
|
0.0
|
28.9
|
0.3
|
CE1
|
D:KZV63
|
1.2
|
24.9
|
0.7
|
CE2
|
D:KZV63
|
1.4
|
28.4
|
0.3
|
CZ
|
D:KZV63
|
2.1
|
31.2
|
0.7
|
CD1
|
D:KZV63
|
2.3
|
25.1
|
0.7
|
CZ
|
D:KZV63
|
2.4
|
31.5
|
0.3
|
CD2
|
D:KZV63
|
2.4
|
27.4
|
0.3
|
OH
|
D:KZV63
|
2.6
|
28.2
|
0.7
|
OH
|
D:KZV63
|
2.8
|
28.6
|
0.3
|
CB
|
D:ILE195
|
2.8
|
38.2
|
1.0
|
CG2
|
D:ILE195
|
2.8
|
29.7
|
1.0
|
O
|
D:HOH354
|
3.1
|
30.2
|
1.0
|
N
|
D:ILE195
|
3.3
|
31.1
|
1.0
|
CE2
|
D:KZV63
|
3.4
|
30.4
|
0.7
|
CG2
|
D:KZV63
|
3.5
|
30.1
|
0.7
|
CA
|
D:ILE195
|
3.6
|
34.5
|
1.0
|
CE1
|
D:KZV63
|
3.6
|
31.2
|
0.3
|
CG2
|
D:KZV63
|
3.6
|
29.4
|
0.3
|
CB
|
D:HIS193
|
3.7
|
27.4
|
1.0
|
CD2
|
D:KZV63
|
3.9
|
30.6
|
0.7
|
CG1
|
D:ILE195
|
4.0
|
34.9
|
1.0
|
C
|
D:HIS194
|
4.0
|
38.2
|
1.0
|
CD1
|
D:ILE195
|
4.1
|
29.2
|
1.0
|
CD1
|
D:KZV63
|
4.1
|
30.0
|
0.3
|
CG
|
D:GLU211
|
4.2
|
31.9
|
1.0
|
N
|
D:HIS194
|
4.2
|
31.0
|
1.0
|
CG
|
D:HIS193
|
4.4
|
34.0
|
1.0
|
CG2
|
D:THR59
|
4.4
|
32.4
|
1.0
|
CA
|
D:HIS194
|
4.4
|
41.7
|
1.0
|
ND1
|
D:HIS193
|
4.4
|
35.5
|
1.0
|
O
|
D:HOH304
|
4.5
|
29.7
|
1.0
|
F
|
D:KZV63
|
4.5
|
38.9
|
0.7
|
C
|
D:HIS193
|
4.6
|
31.4
|
1.0
|
OE1
|
D:GLU211
|
4.6
|
38.9
|
1.0
|
CD
|
D:GLU211
|
4.6
|
43.2
|
1.0
|
CA
|
D:HIS193
|
4.7
|
29.4
|
1.0
|
O
|
D:HIS194
|
4.8
|
32.9
|
1.0
|
CB2
|
D:KZV63
|
4.8
|
28.7
|
0.7
|
C
|
D:ILE195
|
4.9
|
36.5
|
1.0
|
CB2
|
D:KZV63
|
4.9
|
29.8
|
0.3
|
N2
|
D:KZV63
|
5.0
|
30.7
|
0.7
|
N2
|
D:KZV63
|
5.0
|
31.9
|
0.3
|
OG
|
D:SER142
|
5.0
|
29.9
|
1.0
|
|
Fluorine binding site 8 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 8 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F63
b:38.9
occ:0.68
|
F
|
D:KZV63
|
0.0
|
38.9
|
0.7
|
CE1
|
D:KZV63
|
1.3
|
31.2
|
0.3
|
CE2
|
D:KZV63
|
1.4
|
30.4
|
0.7
|
CZ
|
D:KZV63
|
2.2
|
31.5
|
0.3
|
CD2
|
D:KZV63
|
2.4
|
30.6
|
0.7
|
CZ
|
D:KZV63
|
2.4
|
31.2
|
0.7
|
CD1
|
D:KZV63
|
2.4
|
30.0
|
0.3
|
OH
|
D:KZV63
|
2.5
|
28.6
|
0.3
|
OH
|
D:KZV63
|
2.8
|
28.2
|
0.7
|
OG
|
D:SER142
|
2.9
|
29.9
|
1.0
|
CE2
|
D:KZV63
|
3.4
|
28.4
|
0.3
|
CG1
|
D:VAL157
|
3.6
|
36.5
|
1.0
|
CG2
|
D:KZV63
|
3.6
|
29.4
|
0.3
|
CG2
|
D:VAL157
|
3.6
|
35.3
|
1.0
|
CE1
|
D:KZV63
|
3.6
|
24.9
|
0.7
|
CG2
|
D:KZV63
|
3.6
|
30.1
|
0.7
|
CB
|
D:SER142
|
3.9
|
27.6
|
1.0
|
O
|
D:HOH304
|
3.9
|
29.7
|
1.0
|
CE2
|
D:PHE173
|
3.9
|
35.3
|
1.0
|
CD2
|
D:KZV63
|
4.0
|
27.4
|
0.3
|
CD2
|
D:PHE173
|
4.1
|
39.7
|
1.0
|
CD2
|
D:HIS193
|
4.1
|
36.8
|
1.0
|
CD1
|
D:KZV63
|
4.1
|
25.1
|
0.7
|
CB
|
D:VAL157
|
4.1
|
37.4
|
1.0
|
CG
|
D:HIS193
|
4.2
|
34.0
|
1.0
|
CB
|
D:HIS193
|
4.4
|
27.4
|
1.0
|
F
|
D:KZV63
|
4.5
|
28.9
|
0.3
|
CG2
|
D:THR159
|
4.6
|
27.5
|
1.0
|
NE2
|
D:HIS193
|
4.7
|
38.5
|
1.0
|
CZ
|
D:PHE173
|
4.8
|
34.5
|
1.0
|
CB2
|
D:KZV63
|
4.9
|
28.7
|
0.7
|
ND1
|
D:HIS193
|
4.9
|
35.5
|
1.0
|
CB2
|
D:KZV63
|
4.9
|
29.8
|
0.3
|
|
Fluorine binding site 9 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 9 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F63
b:35.5
occ:0.41
|
F
|
E:KZV63
|
0.0
|
35.5
|
0.4
|
CE1
|
E:KZV63
|
1.2
|
33.4
|
0.6
|
CE2
|
E:KZV63
|
1.4
|
34.5
|
0.4
|
CZ
|
E:KZV63
|
2.2
|
37.7
|
0.6
|
CD1
|
E:KZV63
|
2.3
|
33.4
|
0.6
|
CZ
|
E:KZV63
|
2.4
|
37.5
|
0.4
|
CD2
|
E:KZV63
|
2.4
|
33.4
|
0.4
|
OH
|
E:KZV63
|
2.6
|
38.6
|
0.6
|
OH
|
E:KZV63
|
2.8
|
38.2
|
0.4
|
CB
|
E:ILE195
|
2.8
|
39.0
|
1.0
|
CG2
|
E:ILE195
|
2.9
|
31.1
|
1.0
|
O
|
E:HOH365
|
3.1
|
34.7
|
1.0
|
N
|
E:ILE195
|
3.3
|
39.9
|
1.0
|
CE2
|
E:KZV63
|
3.5
|
35.9
|
0.6
|
CG2
|
E:KZV63
|
3.5
|
34.6
|
0.6
|
CA
|
E:ILE195
|
3.6
|
37.7
|
1.0
|
CB
|
E:HIS193
|
3.6
|
33.1
|
1.0
|
CE1
|
E:KZV63
|
3.6
|
35.6
|
0.4
|
CG2
|
E:KZV63
|
3.6
|
34.8
|
0.4
|
C
|
E:HIS194
|
3.9
|
36.8
|
1.0
|
CD2
|
E:KZV63
|
4.0
|
35.5
|
0.6
|
CG
|
E:GLU211
|
4.0
|
39.2
|
1.0
|
CG1
|
E:ILE195
|
4.0
|
38.7
|
1.0
|
N
|
E:HIS194
|
4.1
|
30.2
|
1.0
|
CD1
|
E:KZV63
|
4.1
|
35.5
|
0.4
|
CD1
|
E:ILE195
|
4.1
|
27.9
|
1.0
|
CG
|
E:HIS193
|
4.3
|
35.5
|
1.0
|
CA
|
E:HIS194
|
4.4
|
31.0
|
1.0
|
ND1
|
E:HIS193
|
4.4
|
37.0
|
1.0
|
OE1
|
E:GLU211
|
4.4
|
41.5
|
1.0
|
CD
|
E:GLU211
|
4.5
|
48.9
|
1.0
|
CG2
|
E:THR59
|
4.5
|
31.8
|
1.0
|
C
|
E:HIS193
|
4.5
|
30.1
|
1.0
|
F
|
E:KZV63
|
4.6
|
34.7
|
0.6
|
CA
|
E:HIS193
|
4.6
|
28.1
|
1.0
|
O
|
E:HIS194
|
4.7
|
33.5
|
1.0
|
O
|
E:HOH314
|
4.7
|
32.5
|
1.0
|
CB2
|
E:KZV63
|
4.8
|
34.9
|
0.6
|
C
|
E:ILE195
|
4.9
|
39.3
|
1.0
|
CB2
|
E:KZV63
|
4.9
|
35.4
|
0.4
|
N2
|
E:KZV63
|
5.0
|
38.0
|
0.6
|
N2
|
E:KZV63
|
5.0
|
37.7
|
0.4
|
|
Fluorine binding site 10 out
of 16 in 6nqk
Go back to
Fluorine Binding Sites List in 6nqk
Fluorine binding site 10 out
of 16 in the Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Crystal Structure of Fast Switching M159T Mutant of Fluorescent Protein Dronpa (DRONPA2), Y63(3-Fy) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F63
b:34.7
occ:0.59
|
F
|
E:KZV63
|
0.0
|
34.7
|
0.6
|
CE1
|
E:KZV63
|
1.3
|
35.6
|
0.4
|
CE2
|
E:KZV63
|
1.4
|
35.9
|
0.6
|
CZ
|
E:KZV63
|
2.2
|
37.5
|
0.4
|
CD2
|
E:KZV63
|
2.4
|
35.5
|
0.6
|
CD1
|
E:KZV63
|
2.4
|
35.5
|
0.4
|
CZ
|
E:KZV63
|
2.4
|
37.7
|
0.6
|
OH
|
E:KZV63
|
2.6
|
38.2
|
0.4
|
OH
|
E:KZV63
|
2.8
|
38.6
|
0.6
|
OG
|
E:SER142
|
2.9
|
37.7
|
1.0
|
CE2
|
E:KZV63
|
3.5
|
34.5
|
0.4
|
CG1
|
E:VAL157
|
3.6
|
36.7
|
1.0
|
CG2
|
E:KZV63
|
3.6
|
34.8
|
0.4
|
CG2
|
E:KZV63
|
3.6
|
34.6
|
0.6
|
CE1
|
E:KZV63
|
3.6
|
33.4
|
0.6
|
CG2
|
E:VAL157
|
3.7
|
34.9
|
1.0
|
CE2
|
E:PHE173
|
3.9
|
35.2
|
1.0
|
CB
|
E:SER142
|
3.9
|
27.2
|
1.0
|
CD2
|
E:HIS193
|
4.0
|
34.8
|
1.0
|
O
|
E:HOH314
|
4.0
|
32.5
|
1.0
|
CD2
|
E:KZV63
|
4.0
|
33.4
|
0.4
|
CD2
|
E:PHE173
|
4.1
|
34.1
|
1.0
|
CD1
|
E:KZV63
|
4.1
|
33.4
|
0.6
|
CG
|
E:HIS193
|
4.2
|
35.5
|
1.0
|
CB
|
E:VAL157
|
4.2
|
35.7
|
1.0
|
CB
|
E:HIS193
|
4.4
|
33.1
|
1.0
|
NE2
|
E:HIS193
|
4.6
|
38.8
|
1.0
|
CG2
|
E:THR159
|
4.6
|
29.9
|
1.0
|
F
|
E:KZV63
|
4.6
|
35.5
|
0.4
|
ND1
|
E:HIS193
|
4.8
|
37.0
|
1.0
|
CZ
|
E:PHE173
|
4.8
|
32.5
|
1.0
|
CB2
|
E:KZV63
|
4.9
|
34.9
|
0.6
|
CB2
|
E:KZV63
|
4.9
|
35.4
|
0.4
|
|
Reference:
M.G.Romei,
C.-Y.Lin,
I.I.Mathews,
S.G.Boxer.
Electrostatic Control of Isomerization Pathways in Proteins To Be Published.
Page generated: Thu Aug 1 23:12:20 2024
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