Atomistry » Fluorine » PDB 6no9-6oab » 6nwu
Atomistry »
  Fluorine »
    PDB 6no9-6oab »
      6nwu »

Fluorine in PDB 6nwu: Rorgamma Ligand Binding Domain

Protein crystallography data

The structure of Rorgamma Ligand Binding Domain, PDB code: 6nwu was solved by T.S.Strutzenberg, H.Park, P.R.Griffin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.19 / 3.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 59.880, 59.880, 162.550, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 27.6

Other elements in 6nwu:

The structure of Rorgamma Ligand Binding Domain also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Rorgamma Ligand Binding Domain (pdb code 6nwu). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Rorgamma Ligand Binding Domain, PDB code: 6nwu:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6nwu

Go back to Fluorine Binding Sites List in 6nwu
Fluorine binding site 1 out of 3 in the Rorgamma Ligand Binding Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Rorgamma Ligand Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:58.4
occ:1.00
FAJ A:L7J601 0.0 58.4 1.0
CAI A:L7J601 1.4 55.3 1.0
FAL A:L7J601 2.2 56.0 1.0
FAK A:L7J601 2.2 57.6 1.0
CAH A:L7J601 2.4 50.8 1.0
CAG A:L7J601 3.1 50.0 1.0
CAM A:L7J601 3.3 51.5 1.0
CG2 A:ILE400 3.8 33.2 1.0
CLB A:L7J601 3.8 69.8 1.0
CD1 A:ILE397 3.8 34.0 1.0
CD1 A:ILE400 3.9 29.7 1.0
CAF A:L7J601 4.3 51.8 1.0
CB A:ILE400 4.3 32.5 1.0
SD A:MET365 4.5 46.4 1.0
CE A:MET365 4.5 45.7 1.0
CAD A:L7J601 4.5 54.6 1.0
CAS A:L7J601 4.6 61.5 1.0
CG1 A:ILE400 4.7 28.4 1.0
CAT A:L7J601 4.7 61.2 1.0
CAR A:L7J601 4.8 61.4 1.0
CE1 A:PHE401 4.9 34.8 1.0
CBC A:L7J601 4.9 65.8 1.0
CAE A:L7J601 4.9 52.1 1.0

Fluorine binding site 2 out of 3 in 6nwu

Go back to Fluorine Binding Sites List in 6nwu
Fluorine binding site 2 out of 3 in the Rorgamma Ligand Binding Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Rorgamma Ligand Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:57.6
occ:1.00
FAK A:L7J601 0.0 57.6 1.0
CAI A:L7J601 1.4 55.3 1.0
FAL A:L7J601 2.2 56.0 1.0
FAJ A:L7J601 2.2 58.4 1.0
CAH A:L7J601 2.4 50.8 1.0
CAG A:L7J601 2.8 50.0 1.0
CD2 A:PHE388 3.4 34.6 1.0
CE2 A:PHE388 3.4 35.2 1.0
CD1 A:ILE397 3.5 34.0 1.0
CG A:PHE388 3.5 34.2 1.0
CAM A:L7J601 3.5 51.5 1.0
CZ A:PHE388 3.5 34.5 1.0
CD1 A:PHE388 3.7 33.6 1.0
CE1 A:PHE388 3.7 34.0 1.0
CE1 A:PHE401 3.7 34.8 1.0
CG2 A:ILE397 4.0 38.8 1.0
CAF A:L7J601 4.2 51.8 1.0
CZ A:PHE401 4.2 34.6 1.0
CB A:PHE388 4.4 35.8 1.0
CG1 A:ILE397 4.5 34.6 1.0
CAD A:L7J601 4.7 54.6 1.0
CB A:ILE397 4.7 36.9 1.0
CD1 A:PHE401 4.7 35.1 1.0
CAE A:L7J601 4.9 52.1 1.0

Fluorine binding site 3 out of 3 in 6nwu

Go back to Fluorine Binding Sites List in 6nwu
Fluorine binding site 3 out of 3 in the Rorgamma Ligand Binding Domain


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Rorgamma Ligand Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:56.0
occ:1.00
FAL A:L7J601 0.0 56.0 1.0
CAI A:L7J601 1.4 55.3 1.0
FAK A:L7J601 2.2 57.6 1.0
FAJ A:L7J601 2.2 58.4 1.0
CAH A:L7J601 2.4 50.8 1.0
CAM A:L7J601 2.7 51.5 1.0
CD1 A:ILE397 3.5 34.0 1.0
CAG A:L7J601 3.6 50.0 1.0
CD1 A:PHE388 3.8 33.6 1.0
CE1 A:PHE388 3.9 34.0 1.0
CLB A:L7J601 4.0 69.8 1.0
CAD A:L7J601 4.1 54.6 1.0
CBC A:L7J601 4.2 65.8 1.0
CAT A:L7J601 4.3 61.2 1.0
OAU A:L7J601 4.3 62.2 1.0
CG A:PHE388 4.3 34.2 1.0
CD1 A:LEU391 4.3 28.6 1.0
CBE A:L7J601 4.4 61.1 1.0
CZ A:PHE388 4.4 34.5 1.0
SG A:CYS320 4.4 37.9 1.0
CAW A:L7J601 4.6 63.7 1.0
CBB A:L7J601 4.7 65.3 1.0
CAF A:L7J601 4.8 51.8 1.0
CAS A:L7J601 4.8 61.5 1.0
CD2 A:PHE388 4.8 34.6 1.0
CAV A:L7J601 4.8 62.9 1.0
CE2 A:PHE388 4.8 35.2 1.0
CG1 A:ILE397 4.9 34.6 1.0
CB A:PHE388 4.9 35.8 1.0
CAE A:L7J601 5.0 52.1 1.0

Reference:

T.S.Strutzenberg, R.D.Garcia-Ordonez, S.J.Novick, H.Park, M.R.Chang, C.Doebellin, Y.He, R.Patouret, T.M.Kamenecka, P.R.Griffin. Hdx-Ms Reveals Structural Determinants For Ror Gamma Hyperactivation By Synthetic Agonists. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 31172947
DOI: 10.7554/ELIFE.47172
Page generated: Thu Aug 1 23:13:20 2024

Last articles

Cl in 2XYJ
Cl in 2XYQ
Cl in 2XYN
Cl in 2XX2
Cl in 2XYD
Cl in 2XY9
Cl in 2XXV
Cl in 2XXW
Cl in 2XXU
Cl in 2XXT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy