Fluorine in PDB 6o72: Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State

Other elements in 6o72:

The structure of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State also contains other interesting chemical elements:

Sodium (Na) 8 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Fluorine atom in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State (pdb code 6o72). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State, PDB code: 6o72:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 24 in 6o72

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Fluorine binding site 1 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1305

b:66.4
occ:1.00
F01 A:T141305 0.0 66.4 1.0
C02 A:T141305 1.4 66.4 1.0
F33 A:T141305 2.2 66.4 1.0
F32 A:T141305 2.2 66.4 1.0
C03 A:T141305 2.3 66.4 1.0
C04 A:T141305 2.6 66.4 1.0
N A:SER840 2.9 44.8 1.0
CB A:SER840 3.2 44.8 1.0
CA A:SER840 3.2 44.8 1.0
O A:ILE836 3.3 43.9 1.0
CG1 A:VAL839 3.3 43.1 1.0
C A:VAL839 3.4 43.1 1.0
CB A:VAL839 3.4 43.1 1.0
C08 A:T141305 3.6 66.4 1.0
CA A:VAL839 3.9 43.1 1.0
C05 A:T141305 4.0 66.4 1.0
O A:VAL839 4.1 43.1 1.0
OG A:SER840 4.2 44.8 1.0
C A:ILE836 4.3 43.9 1.0
C09 A:T141305 4.3 66.4 1.0
CZ A:PHE729 4.4 51.4 1.0
N A:VAL839 4.4 43.1 1.0
CA A:ILE836 4.5 43.9 1.0
CG2 A:VAL839 4.7 43.1 1.0
C07 A:T141305 4.7 66.4 1.0
C A:SER840 4.7 44.8 1.0
CG2 A:ILE836 4.9 43.9 1.0
C06 A:T141305 4.9 66.4 1.0
C31 A:T141305 4.9 66.4 1.0
C10 A:T141305 4.9 66.4 1.0
CD1 A:LEU843 4.9 45.4 1.0
CE1 A:PHE729 5.0 51.4 1.0

Fluorine binding site 2 out of 24 in 6o72

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Fluorine binding site 2 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


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Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1305

b:66.4
occ:1.00
F13 A:T141305 0.0 66.4 1.0
C12 A:T141305 1.4 66.4 1.0
F15 A:T141305 2.2 66.4 1.0
F14 A:T141305 2.2 66.4 1.0
C11 A:T141305 2.4 66.4 1.0
C16 A:T141305 3.0 66.4 1.0
ND2 A:ASN790 3.1 78.1 1.0
N17 A:T141305 3.1 66.4 1.0
NH2 A:ARG832 3.5 54.1 1.0
C10 A:T141305 3.5 66.4 1.0
OD1 A:ASN790 3.7 78.1 1.0
CG A:ASN790 3.8 78.1 1.0
C30 A:T141305 4.2 66.4 1.0
C18 A:T141305 4.4 66.4 1.0
NE2 A:GLN776 4.5 92.5 1.0
C09 A:T141305 4.6 66.4 1.0
CZ A:ARG832 4.8 54.1 1.0
C31 A:T141305 5.0 66.4 1.0
N29 A:T141305 5.0 66.4 1.0

Fluorine binding site 3 out of 24 in 6o72

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Fluorine binding site 3 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1305

b:66.4
occ:1.00
F14 A:T141305 0.0 66.4 1.0
C12 A:T141305 1.4 66.4 1.0
F15 A:T141305 2.2 66.4 1.0
F13 A:T141305 2.2 66.4 1.0
NH2 A:ARG832 2.3 54.1 1.0
C11 A:T141305 2.4 66.4 1.0
C16 A:T141305 3.1 66.4 1.0
N17 A:T141305 3.3 66.4 1.0
CZ A:ARG832 3.3 54.1 1.0
C10 A:T141305 3.4 66.4 1.0
OD1 A:ASN790 3.6 78.1 1.0
ND2 A:ASN790 3.7 78.1 1.0
NH1 A:ARG832 3.8 54.1 1.0
CG A:ASN790 4.0 78.1 1.0
C30 A:T141305 4.3 66.4 1.0
NE A:ARG832 4.3 54.1 1.0
NE2 A:HIS835 4.4 45.5 1.0
CD2 A:HIS835 4.5 45.5 1.0
C09 A:T141305 4.6 66.4 1.0
C18 A:T141305 4.6 66.4 1.0
F33 A:T141305 4.8 66.4 1.0
C31 A:T141305 4.9 66.4 1.0

Fluorine binding site 4 out of 24 in 6o72

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Fluorine binding site 4 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1305

b:66.4
occ:1.00
F15 A:T141305 0.0 66.4 1.0
C12 A:T141305 1.4 66.4 1.0
F14 A:T141305 2.2 66.4 1.0
F13 A:T141305 2.2 66.4 1.0
C11 A:T141305 2.4 66.4 1.0
C10 A:T141305 2.7 66.4 1.0
C16 A:T141305 3.7 66.4 1.0
C09 A:T141305 4.0 66.4 1.0
OD1 A:ASN790 4.2 78.1 1.0
N17 A:T141305 4.5 66.4 1.0
NH2 A:ARG832 4.5 54.1 1.0
F33 A:T141305 4.7 66.4 1.0
ND2 A:ASN790 4.7 78.1 1.0
C30 A:T141305 4.8 66.4 1.0
C31 A:T141305 4.9 66.4 1.0
CG A:ASN790 4.9 78.1 1.0
C08 A:T141305 5.0 66.4 1.0

Fluorine binding site 5 out of 24 in 6o72

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Fluorine binding site 5 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1305

b:66.4
occ:1.00
F32 A:T141305 0.0 66.4 1.0
C02 A:T141305 1.4 66.4 1.0
F01 A:T141305 2.2 66.4 1.0
F33 A:T141305 2.2 66.4 1.0
C03 A:T141305 2.4 66.4 1.0
C08 A:T141305 3.1 66.4 1.0
C09 A:T141305 3.1 66.4 1.0
C31 A:T141305 3.1 66.4 1.0
CZ A:PHE729 3.2 51.4 1.0
CG2 A:ILE836 3.4 43.9 1.0
C04 A:T141305 3.4 66.4 1.0
CE1 A:PHE729 3.4 51.4 1.0
O A:ILE836 3.5 43.9 1.0
CA A:ILE836 3.8 43.9 1.0
CG1 A:ILE836 3.8 43.9 1.0
CB A:ILE836 3.8 43.9 1.0
C10 A:T141305 4.0 66.4 1.0
C30 A:T141305 4.0 66.4 1.0
C A:ILE836 4.1 43.9 1.0
C07 A:T141305 4.3 66.4 1.0
CB A:SER840 4.4 44.8 1.0
CE2 A:PHE729 4.5 51.4 1.0
C05 A:T141305 4.6 66.4 1.0
CD1 A:PHE729 4.7 51.4 1.0
C11 A:T141305 4.7 66.4 1.0
C16 A:T141305 4.7 66.4 1.0
N A:SER840 4.7 44.8 1.0
N29 A:T141305 4.8 66.4 1.0
CB A:VAL839 4.9 43.1 1.0
CD1 A:ILE836 4.9 43.9 1.0
C06 A:T141305 5.0 66.4 1.0

Fluorine binding site 6 out of 24 in 6o72

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Fluorine binding site 6 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1305

b:66.4
occ:1.00
F33 A:T141305 0.0 66.4 1.0
C02 A:T141305 1.4 66.4 1.0
F01 A:T141305 2.2 66.4 1.0
F32 A:T141305 2.2 66.4 1.0
C03 A:T141305 2.4 66.4 1.0
C09 A:T141305 3.0 66.4 1.0
C08 A:T141305 3.0 66.4 1.0
C10 A:T141305 3.1 66.4 1.0
CG1 A:VAL839 3.3 43.1 1.0
CB A:VAL839 3.4 43.1 1.0
C04 A:T141305 3.5 66.4 1.0
C31 A:T141305 3.8 66.4 1.0
C11 A:T141305 3.9 66.4 1.0
CG2 A:VAL839 4.3 43.1 1.0
C07 A:T141305 4.3 66.4 1.0
O A:ILE836 4.4 43.9 1.0
CA A:ILE836 4.5 43.9 1.0
C30 A:T141305 4.5 66.4 1.0
C16 A:T141305 4.5 66.4 1.0
CA A:VAL839 4.6 43.1 1.0
F15 A:T141305 4.7 66.4 1.0
N A:SER840 4.7 44.8 1.0
C05 A:T141305 4.7 66.4 1.0
C12 A:T141305 4.7 66.4 1.0
O A:HIS835 4.7 45.5 1.0
C A:VAL839 4.8 43.1 1.0
F14 A:T141305 4.8 66.4 1.0
CG1 A:ILE836 4.8 43.9 1.0
C A:ILE836 4.9 43.9 1.0

Fluorine binding site 7 out of 24 in 6o72

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Fluorine binding site 7 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1304

b:66.4
occ:1.00
F01 B:T141304 0.0 66.4 1.0
C02 B:T141304 1.4 66.4 1.0
F33 B:T141304 2.2 66.4 1.0
F32 B:T141304 2.2 66.4 1.0
C03 B:T141304 2.3 66.4 1.0
C04 B:T141304 2.6 66.4 1.0
N B:SER840 2.9 44.8 1.0
CB B:SER840 3.2 44.8 1.0
CA B:SER840 3.2 44.8 1.0
O B:ILE836 3.3 43.9 1.0
CG1 B:VAL839 3.3 43.1 1.0
C B:VAL839 3.4 43.1 1.0
CB B:VAL839 3.4 43.1 1.0
C08 B:T141304 3.6 66.4 1.0
CA B:VAL839 3.9 43.1 1.0
C05 B:T141304 4.0 66.4 1.0
O B:VAL839 4.1 43.1 1.0
OG B:SER840 4.2 44.8 1.0
C B:ILE836 4.3 43.9 1.0
C09 B:T141304 4.3 66.4 1.0
CZ B:PHE729 4.4 51.4 1.0
N B:VAL839 4.4 43.1 1.0
CA B:ILE836 4.5 43.9 1.0
CG2 B:VAL839 4.7 43.1 1.0
C07 B:T141304 4.7 66.4 1.0
C B:SER840 4.7 44.8 1.0
CG2 B:ILE836 4.9 43.9 1.0
C06 B:T141304 4.9 66.4 1.0
C31 B:T141304 4.9 66.4 1.0
C10 B:T141304 4.9 66.4 1.0
CD1 B:LEU843 4.9 45.4 1.0
CE1 B:PHE729 5.0 51.4 1.0

Fluorine binding site 8 out of 24 in 6o72

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Fluorine binding site 8 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1304

b:66.4
occ:1.00
F13 B:T141304 0.0 66.4 1.0
C12 B:T141304 1.4 66.4 1.0
F15 B:T141304 2.2 66.4 1.0
F14 B:T141304 2.2 66.4 1.0
C11 B:T141304 2.4 66.4 1.0
C16 B:T141304 3.0 66.4 1.0
ND2 B:ASN790 3.1 78.1 1.0
N17 B:T141304 3.1 66.4 1.0
NH2 B:ARG832 3.5 54.1 1.0
C10 B:T141304 3.5 66.4 1.0
OD1 B:ASN790 3.7 78.1 1.0
CG B:ASN790 3.8 78.1 1.0
C30 B:T141304 4.2 66.4 1.0
C18 B:T141304 4.4 66.4 1.0
NE2 B:GLN776 4.5 92.5 1.0
C09 B:T141304 4.6 66.4 1.0
CZ B:ARG832 4.8 54.1 1.0
C31 B:T141304 5.0 66.4 1.0
N29 B:T141304 5.0 66.4 1.0

Fluorine binding site 9 out of 24 in 6o72

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Fluorine binding site 9 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1304

b:66.4
occ:1.00
F14 B:T141304 0.0 66.4 1.0
C12 B:T141304 1.4 66.4 1.0
F15 B:T141304 2.2 66.4 1.0
F13 B:T141304 2.2 66.4 1.0
NH2 B:ARG832 2.3 54.1 1.0
C11 B:T141304 2.4 66.4 1.0
C16 B:T141304 3.1 66.4 1.0
N17 B:T141304 3.3 66.4 1.0
CZ B:ARG832 3.3 54.1 1.0
C10 B:T141304 3.4 66.4 1.0
OD1 B:ASN790 3.6 78.1 1.0
ND2 B:ASN790 3.7 78.1 1.0
NH1 B:ARG832 3.8 54.1 1.0
CG B:ASN790 4.0 78.1 1.0
C30 B:T141304 4.3 66.4 1.0
NE B:ARG832 4.3 54.1 1.0
NE2 B:HIS835 4.4 45.5 1.0
CD2 B:HIS835 4.5 45.5 1.0
C09 B:T141304 4.6 66.4 1.0
C18 B:T141304 4.6 66.4 1.0
F33 B:T141304 4.8 66.4 1.0
C31 B:T141304 4.9 66.4 1.0

Fluorine binding site 10 out of 24 in 6o72

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Fluorine binding site 10 out of 24 in the Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of the TRPM8 Cold Receptor By Single Particle Electron Cryo- Microscopy, Tc-I 2014-Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1304

b:66.4
occ:1.00
F15 B:T141304 0.0 66.4 1.0
C12 B:T141304 1.4 66.4 1.0
F14 B:T141304 2.2 66.4 1.0
F13 B:T141304 2.2 66.4 1.0
C11 B:T141304 2.4 66.4 1.0
C10 B:T141304 2.7 66.4 1.0
C16 B:T141304 3.7 66.4 1.0
C09 B:T141304 4.0 66.4 1.0
OD1 B:ASN790 4.2 78.1 1.0
N17 B:T141304 4.5 66.4 1.0
NH2 B:ARG832 4.5 54.1 1.0
F33 B:T141304 4.7 66.4 1.0
ND2 B:ASN790 4.7 78.1 1.0
C30 B:T141304 4.8 66.4 1.0
C31 B:T141304 4.9 66.4 1.0
CG B:ASN790 4.9 78.1 1.0
C08 B:T141304 5.0 66.4 1.0

Reference:

M.M.Diver, Y.Cheng, D.Julius. Structural Insights Into TRPM8 Inhibition and Desensitization. Science V. 365 1434 2019.
ISSN: ESSN 1095-9203
PubMed: 31488702
DOI: 10.1126/SCIENCE.AAX6672
Page generated: Sun Dec 13 13:01:32 2020

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