Fluorine in PDB 6og9: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51)

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51), PDB code: 6og9 was solved by C.-Y.Lin, A.Deng, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.59 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.123, 70.131, 61.100, 90.00, 96.31, 90.00
R / Rfree (%)	16.8 / 20

The binding sites of Fluorine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51) (pdb code 6og9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51), PDB code: 6og9:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ B:F15 b:15.3 occ:1.00 F13 B:MHY15 0.0 15.3 1.0 CE1 B:MHY15 1.4 10.3 1.0 CZ B:MHY15 2.4 10.2 1.0 CD1 B:MHY15 2.4 9.8 1.0 OH B:MHY15 2.7 12.5 1.0 CG2 B:VAL100 3.1 14.4 1.0 CE2 B:PHE115 3.2 12.9 1.0 OD2 B:ASP98 3.2 15.2 1.0 CB B:ASP98 3.4 11.9 1.0 CG B:ASP98 3.5 12.8 1.0 CD2 B:PHE115 3.6 8.8 1.0 CE2 B:MHY15 3.6 12.5 1.0 CG2 B:MHY15 3.7 9.9 1.0 CZ B:PHE115 3.9 10.7 1.0 CD2 B:MHY15 4.1 12.4 1.0 CG2 B:VAL117 4.3 8.5 1.0 CG2 B:THR12 4.3 8.8 1.0 OD1 B:ASP98 4.4 13.9 1.0 CG B:PHE115 4.5 10.0 1.0 CB B:VAL100 4.6 9.7 1.0 F17 B:MHY15 4.7 14.9 1.0 CG2 B:THR153 4.8 11.6 1.0 CE1 B:PHE115 4.8 11.1 1.0 CA B:ASP98 4.9 13.1 1.0 CB2 B:MHY15 4.9 8.5 1.0 CZ B:PHE95 4.9 11.1 1.0 OG1 B:THR153 4.9 9.2 1.0

Fluorine binding site 2 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ B:F15 b:14.9 occ:1.00 F17 B:MHY15 0.0 14.9 1.0 CE2 B:MHY15 1.4 12.5 1.0 CZ B:MHY15 2.4 10.2 1.0 CD2 B:MHY15 2.4 12.4 1.0 OH B:MHY15 2.7 12.5 1.0 OG1 B:THR155 3.4 10.9 1.0 OE2 B:GLU172 3.5 17.4 1.0 CB B:THR153 3.5 8.1 1.0 CD B:GLU172 3.5 17.8 1.0 CE2 B:PHE95 3.5 11.2 1.0 O B:HOH389 3.6 12.5 1.0 OG1 B:THR153 3.6 9.2 1.0 CE1 B:MHY15 3.6 10.3 1.0 CG2 B:MHY15 3.7 9.9 1.0 OE1 B:GLU172 3.8 18.0 1.0 CG2 B:THR153 3.8 11.6 1.0 CG B:GLU172 4.1 10.9 1.0 CD1 B:MHY15 4.1 9.8 1.0 CD2 B:PHE95 4.2 10.1 1.0 CZ B:PHE95 4.4 11.1 1.0 O B:HOH480 4.5 31.8 1.0 CG1 B:VAL11 4.6 10.0 1.0 F13 B:MHY15 4.7 15.3 1.0 CB B:THR155 4.8 9.1 1.0 CA B:THR153 4.9 11.0 1.0 CB2 B:MHY15 5.0 8.5 1.0 CG2 B:VAL174 5.0 8.4 1.0 OG1 B:MHY15 5.0 15.3 1.0

Fluorine binding site 3 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:F15 b:17.2 occ:1.00 F13 A:MHY15 0.0 17.2 1.0 CE1 A:MHY15 1.4 12.3 1.0 CZ A:MHY15 2.4 10.3 1.0 CD1 A:MHY15 2.4 10.8 1.0 OH A:MHY15 2.7 10.8 1.0 CG2 A:VAL100 3.1 18.2 1.0 CE2 A:PHE115 3.2 10.5 1.0 OD1 A:ASP98 3.3 12.1 1.0 CB A:ASP98 3.3 10.9 1.0 CG A:ASP98 3.5 13.5 1.0 CD2 A:PHE115 3.6 10.2 1.0 CE2 A:MHY15 3.6 12.4 1.0 CG2 A:MHY15 3.7 12.5 1.0 CZ A:PHE115 4.0 10.5 1.0 CD2 A:MHY15 4.1 10.7 1.0 OD2 A:ASP98 4.4 12.7 1.0 CG2 A:VAL117 4.4 13.2 1.0 CG2 A:THR12 4.4 9.1 1.0 CG A:PHE115 4.6 14.2 1.0 CB A:VAL100 4.6 18.2 1.0 F17 A:MHY15 4.7 14.3 1.0 CG2 A:THR153 4.8 10.4 1.0 CA A:ASP98 4.8 10.4 1.0 OG1 A:THR153 4.9 10.9 1.0 CE1 A:PHE115 4.9 14.6 1.0 CB2 A:MHY15 4.9 12.0 1.0 CZ A:PHE95 5.0 9.4 1.0

Fluorine binding site 4 out of 4 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:F15 b:14.3 occ:1.00 F17 A:MHY15 0.0 14.3 1.0 CE2 A:MHY15 1.4 12.4 1.0 CZ A:MHY15 2.4 10.3 1.0 CD2 A:MHY15 2.4 10.7 1.0 OH A:MHY15 2.7 10.8 1.0 OG1 A:THR155 3.3 11.2 1.0 CE1 A:PHE95 3.4 11.0 1.0 OG1 A:THR153 3.4 10.9 1.0 OE2 A:GLU172 3.5 15.5 1.0 CB A:THR153 3.5 11.2 1.0 O A:HOH408 3.6 11.8 1.0 CD A:GLU172 3.6 17.5 1.0 CE1 A:MHY15 3.6 12.3 1.0 CG2 A:MHY15 3.7 12.5 1.0 CG2 A:THR153 3.8 10.4 1.0 OE1 A:GLU172 3.9 17.3 1.0 CD1 A:PHE95 4.1 10.2 1.0 CD1 A:MHY15 4.1 10.8 1.0 CZ A:PHE95 4.2 9.4 1.0 CG A:GLU172 4.2 16.5 1.0 CG1 A:VAL11 4.5 8.2 1.0 O A:HOH422 4.6 17.7 1.0 CB A:THR155 4.7 10.6 1.0 F13 A:MHY15 4.7 17.2 1.0 CA A:THR153 4.9 10.7 1.0 CB2 A:MHY15 5.0 12.0 1.0

C.-Y.Lin, A.Deng, S.G.Boxer. Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3,5-F2Y), H148D; Circular Permutant (50-51) To Be Published.