Fluorine in PDB 6ogc: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)

Protein crystallography data

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51), PDB code: 6ogc was solved by C.-Y.Lin, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.50 / 1.18
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.275, 68.866, 60.968, 90.00, 100.34, 90.00
R / Rfree (%) 14.3 / 16.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) (pdb code 6ogc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51), PDB code: 6ogc:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 6ogc

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Fluorine binding site 1 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F15

b:10.9
occ:1.00
 F1 B:MJ115 0.0 10.9 1.0
CE2 B:MJ115 1.3 9.0 1.0
CD2 B:MJ115 2.3 8.7 1.0
CZ B:MJ115 2.3 8.1 1.0
F2 B:MJ115 2.7 9.6 1.0
OH B:MJ115 2.7 9.3 1.0
CG2 B:VAL100 3.1 8.8 1.0
CE2 B:PHE115 3.1 11.3 1.0
OD1 B:ASP98 3.1 10.0 1.0
CB B:ASP98 3.2 9.9 1.0
CG B:ASP98 3.4 10.6 1.0
CD2 B:PHE115 3.5 10.3 1.0
CE1 B:MJ115 3.6 9.6 1.0
CG2 B:MJ115 3.7 9.4 1.0
CZ B:PHE115 3.7 11.0 1.0
CD1 B:MJ115 4.1 9.6 1.0
CG B:PHE115 4.2 9.0 1.0
CG2 B:THR153 4.3 9.3 1.0
OD2 B:ASP98 4.4 11.7 1.0
CG2 B:THR12 4.4 7.8 1.0
CE1 B:PHE115 4.4 10.4 1.0
OG1 B:THR153 4.5 8.8 1.0
CB B:VAL100 4.6 7.7 1.0
CD1 B:PHE115 4.6 9.6 1.0
CA B:ASP98 4.6 8.7 1.0
CB2 B:MJ115 4.8 9.3 1.0
O B:HOH492 4.8 12.5 1.0
CG2 B:VAL117 4.8 9.1 1.0
CB B:THR153 5.0 8.3 1.0

Fluorine binding site 2 out of 6 in 6ogc

Go back to Fluorine Binding Sites List in 6ogc
Fluorine binding site 2 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F15

b:9.6
occ:1.00
 F2 B:MJ115 0.0 9.6 1.0
CD2 B:MJ115 1.3 8.7 1.0
CE2 B:MJ115 2.3 9.0 1.0
CG2 B:MJ115 2.4 9.4 1.0
F1 B:MJ115 2.7 10.9 1.0
CB2 B:MJ115 2.7 9.3 1.0
CZ B:PHE115 3.0 11.0 1.0
CG2 B:VAL100 3.4 8.8 1.0
CE2 B:PHE115 3.5 11.3 1.0
NE2 B:GLN19 3.5 9.9 1.0
O B:HOH492 3.6 12.5 1.0
CE1 B:PHE115 3.6 10.4 1.0
CD1 B:MJ115 3.6 9.6 1.0
CZ B:MJ115 3.6 8.1 1.0
NH2 B:ARG46 3.7 7.4 1.0
CA2 B:MJ115 4.1 7.7 1.0
CE1 B:MJ115 4.1 9.6 1.0
CG2 B:THR12 4.2 7.8 1.0
CD2 B:PHE115 4.4 10.3 1.0
CG1 B:VAL100 4.4 8.2 1.0
CB B:THR12 4.5 7.3 1.0
CD1 B:PHE115 4.5 9.6 1.0
CB B:VAL100 4.5 7.7 1.0
CZ B:ARG46 4.6 7.2 1.0
CD B:GLN19 4.6 9.1 1.0
OH B:MJ115 4.7 9.3 1.0
OE1 B:GLN133 4.8 7.7 1.0
C2 B:MJ115 4.8 7.6 1.0
O2 B:MJ115 4.9 7.8 1.0
CG B:PHE115 4.9 9.0 1.0

Fluorine binding site 3 out of 6 in 6ogc

Go back to Fluorine Binding Sites List in 6ogc
Fluorine binding site 3 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F15

b:10.9
occ:0.87
 F1 A:MJ115 0.0 10.9 0.9
CE1 A:MJ115 1.2 9.6 0.1
CE2 A:MJ115 1.4 9.4 0.9
CZ A:MJ115 2.2 9.6 0.1
CD1 A:MJ115 2.3 9.6 0.1
CD2 A:MJ115 2.3 8.8 0.9
CZ A:MJ115 2.4 9.6 0.9
OH A:MJ115 2.6 9.4 0.1
F2 A:MJ115 2.7 9.4 0.9
OH A:MJ115 2.8 11.5 0.9
OD2 A:ASP98 3.1 11.8 1.0
CG2 A:VAL100 3.2 15.3 1.0
CB A:ASP98 3.3 11.5 1.0
CG A:ASP98 3.4 11.7 1.0
CE2 A:PHE115 3.4 10.4 1.0
CE2 A:MJ115 3.5 9.9 0.1
CG2 A:MJ115 3.6 9.4 0.1
CG2 A:MJ115 3.7 9.1 0.9
CE1 A:MJ115 3.7 9.8 0.9
CD2 A:PHE115 3.8 11.1 1.0
CD2 A:MJ115 4.0 9.9 0.1
CD1 A:MJ115 4.1 9.6 0.9
CZ A:PHE115 4.2 10.5 1.0
CG2 A:THR12 4.3 8.4 1.0
OD1 A:ASP98 4.3 13.2 1.0
CG2 A:VAL117 4.3 11.2 1.0
CG2 A:THR153 4.5 11.6 1.0
F1 A:MJ115 4.6 10.6 0.1
OG1 A:THR153 4.6 11.2 1.0
CB A:VAL100 4.7 14.0 1.0
CA A:ASP98 4.8 10.5 1.0
CB2 A:MJ115 4.8 9.6 0.9
CB2 A:MJ115 4.8 9.0 0.1
CG A:PHE115 4.8 11.3 1.0
O A:HOH493 4.9 15.1 1.0

Fluorine binding site 4 out of 6 in 6ogc

Go back to Fluorine Binding Sites List in 6ogc
Fluorine binding site 4 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F15

b:10.6
occ:0.13
 F1 A:MJ115 0.0 10.6 0.1
CE1 A:MJ115 1.2 9.8 0.9
CE2 A:MJ115 1.4 9.9 0.1
CZ A:MJ115 2.2 9.6 0.9
CD1 A:MJ115 2.3 9.6 0.9
CD2 A:MJ115 2.3 9.9 0.1
CZ A:MJ115 2.5 9.6 0.1
F2 A:MJ115 2.5 10.5 0.1
OH A:MJ115 2.6 11.5 0.9
OH A:MJ115 2.8 9.4 0.1
OG1 A:THR155 3.0 11.1 1.0
CE2 A:PHE95 3.3 13.9 1.0
CE2 A:MJ115 3.5 9.4 0.9
O A:HOH382 3.6 13.9 1.0
OE2 A:GLU172 3.6 13.5 1.0
CG2 A:MJ115 3.6 9.1 0.9
CD A:GLU172 3.6 12.4 1.0
CG2 A:MJ115 3.7 9.4 0.1
CE1 A:MJ115 3.8 9.6 0.1
OE1 A:GLU172 3.9 12.5 1.0
CD2 A:PHE95 4.0 12.0 1.0
OG1 A:THR153 4.0 11.2 1.0
CB A:THR153 4.0 10.3 1.0
CD2 A:MJ115 4.0 8.8 0.9
CZ A:PHE95 4.1 14.2 1.0
CG1 A:VAL11 4.1 8.7 1.0
CD1 A:MJ115 4.2 9.6 0.1
CG A:GLU172 4.2 11.8 1.0
CB A:THR155 4.3 10.8 1.0
CG2 A:THR153 4.4 11.6 1.0
F1 A:MJ115 4.6 10.9 0.9
CG2 A:THR155 4.7 12.4 1.0
OG1 A:MJ115 4.9 9.6 0.9
CB2 A:MJ115 4.9 9.6 0.9
CB2 A:MJ115 4.9 9.0 0.1
OD2 A:ASP98 4.9 11.8 1.0
O A:HOH394 5.0 17.9 1.0

Fluorine binding site 5 out of 6 in 6ogc

Go back to Fluorine Binding Sites List in 6ogc
Fluorine binding site 5 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F15

b:9.4
occ:0.87
 F2 A:MJ115 0.0 9.4 0.9
CD1 A:MJ115 1.2 9.6 0.1
CD2 A:MJ115 1.3 8.8 0.9
CE1 A:MJ115 2.2 9.6 0.1
CG2 A:MJ115 2.3 9.4 0.1
CE2 A:MJ115 2.3 9.4 0.9
CG2 A:MJ115 2.4 9.1 0.9
F1 A:MJ115 2.7 10.9 0.9
CB2 A:MJ115 2.7 9.0 0.1
CB2 A:MJ115 2.7 9.6 0.9
CZ A:PHE115 3.2 10.5 1.0
CE2 A:PHE115 3.3 10.4 1.0
CG2 A:VAL100 3.5 15.3 1.0
CD2 A:MJ115 3.5 9.9 0.1
CZ A:MJ115 3.6 9.6 0.1
CD1 A:MJ115 3.7 9.6 0.9
CZ A:MJ115 3.7 9.6 0.9
O A:HOH493 3.7 15.1 1.0
NE2 A:GLN19 3.7 11.0 1.0
NH2 A:ARG46 3.8 8.9 1.0
CE2 A:MJ115 4.0 9.9 0.1
CG2 A:THR12 4.0 8.4 1.0
CE1 A:PHE115 4.1 11.2 1.0
CA2 A:MJ115 4.1 7.5 0.9
CA2 A:MJ115 4.1 8.8 0.1
CE1 A:MJ115 4.2 9.8 0.9
CB A:THR12 4.4 7.3 1.0
CD2 A:PHE115 4.4 11.1 1.0
CG1 A:VAL100 4.6 16.1 1.0
CB A:VAL100 4.6 14.0 1.0
OH A:MJ115 4.6 9.4 0.1
OH A:MJ115 4.7 11.5 0.9
CZ A:ARG46 4.7 8.4 1.0
F2 A:MJ115 4.7 10.5 0.1
C2 A:MJ115 4.9 8.0 0.9
CD A:GLN19 4.9 9.3 1.0
O2 A:MJ115 4.9 8.3 0.9
OE1 A:GLN133 4.9 9.1 1.0
O2 A:MJ115 4.9 8.9 0.1
CD1 A:PHE115 4.9 11.9 1.0
C2 A:MJ115 4.9 8.9 0.1

Fluorine binding site 6 out of 6 in 6ogc

Go back to Fluorine Binding Sites List in 6ogc
Fluorine binding site 6 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F15

b:10.5
occ:0.13
 F2 A:MJ115 0.0 10.5 0.1
CD1 A:MJ115 1.2 9.6 0.9
CD2 A:MJ115 1.4 9.9 0.1
CE1 A:MJ115 2.2 9.8 0.9
CE2 A:MJ115 2.3 9.9 0.1
CG2 A:MJ115 2.4 9.1 0.9
CG2 A:MJ115 2.5 9.4 0.1
N2 A:MJ115 2.5 7.2 0.9
F1 A:MJ115 2.5 10.6 0.1
N2 A:MJ115 2.6 8.7 0.1
OE2 A:GLU172 2.7 13.5 1.0
OG1 A:MJ115 2.9 9.6 0.9
CB2 A:MJ115 3.0 9.6 0.9
CB2 A:MJ115 3.0 9.0 0.1
CA2 A:MJ115 3.0 7.5 0.9
CA2 A:MJ115 3.1 8.8 0.1
CD A:GLU172 3.2 12.4 1.0
OG1 A:MJ115 3.2 9.1 0.1
OE1 A:GLU172 3.3 12.5 1.0
O A:HOH394 3.4 17.9 1.0
CZ A:MJ115 3.5 9.6 0.9
CD2 A:MJ115 3.6 8.8 0.9
CZ A:MJ115 3.7 9.6 0.1
C1 A:MJ115 3.7 6.8 0.9
CD1 A:MJ115 3.8 9.6 0.1
C1 A:MJ115 3.8 8.6 0.1
CB1 A:MJ115 4.0 9.2 0.9
CE2 A:MJ115 4.0 9.4 0.9
CG1 A:VAL11 4.0 8.7 1.0
CB1 A:MJ115 4.0 9.1 0.1
O A:VAL11 4.2 7.4 1.0
CE1 A:MJ115 4.2 9.6 0.1
CA A:THR12 4.4 6.8 1.0
C2 A:MJ115 4.4 8.0 0.9
CA1 A:MJ115 4.4 7.5 0.9
CA1 A:MJ115 4.5 8.7 0.1
CG A:GLU172 4.5 11.8 1.0
OH A:MJ115 4.5 11.5 0.9
O A:HOH405 4.6 9.5 1.0
C2 A:MJ115 4.6 8.9 0.1
C A:VAL11 4.7 6.7 1.0
O A:HOH493 4.7 15.1 1.0
N3 A:MJ115 4.7 7.5 0.9
OH A:MJ115 4.7 9.4 0.1
F2 A:MJ115 4.7 9.4 0.9
CG2 A:THR12 4.8 8.4 1.0
N A:THR12 4.8 7.0 1.0
O A:HOH501 4.9 39.6 1.0
N3 A:MJ115 4.9 8.9 0.1
OG1 A:THR155 4.9 11.1 1.0

Reference:

C.-Y.Lin, A.Deng, S.G.Boxer. Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3-F2Y), H148D; Circular Permutant (50-51) To Be Published.
Page generated: Sun Dec 13 13:02:04 2020

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