Fluorine in PDB 6ohh: Structure of EF1P2_MFAP2B Bound to Dfhbi

The structure of Structure of EF1P2_MFAP2B Bound to Dfhbi, PDB code: 6ohh was solved by L.A.Doyle, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.42 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	36.350, 35.564, 86.596, 90.00, 90.68, 90.00
R / Rfree (%)	16.9 / 20.1

The structure of Structure of EF1P2_MFAP2B Bound to Dfhbi also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Fluorine atom in the Structure of EF1P2_MFAP2B Bound to Dfhbi (pdb code 6ohh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of EF1P2_MFAP2B Bound to Dfhbi, PDB code: 6ohh:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Structure of EF1P2_MFAP2B Bound to Dfhbi


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of EF1P2_MFAP2B Bound to Dfhbi within 5.0Å range: probe atom residue distance (Å) B Occ A:F202 b:15.7 occ:1.00 F1 A:38E202 0.0 15.7 1.0 C2 A:38E202 1.3 12.0 1.0 C1 A:38E202 2.4 13.5 1.0 C3 A:38E202 2.4 11.7 1.0 O1 A:38E202 2.7 13.5 1.0 ND2 A:ASN21 3.6 14.7 1.0 C A:38E202 3.6 15.1 1.0 C4 A:38E202 3.6 12.7 1.0 CB A:SER27 3.7 12.9 1.0 OG A:SER27 3.8 14.8 1.0 CG2 A:ILE49 3.9 15.0 1.0 C5 A:38E202 4.1 10.6 1.0 CB A:ASN21 4.2 11.2 1.0 CD2 A:LEU121 4.2 13.9 1.0 CG1 A:ILE49 4.2 12.4 1.0 CD1 A:ILE49 4.3 13.4 1.0 CG A:ASN21 4.3 18.8 1.0 O A:THR26 4.4 15.6 1.0 C A:THR26 4.4 11.9 1.0 N A:SER27 4.6 13.6 1.0 N A:ASN21 4.6 11.1 1.0 CB A:ILE49 4.6 14.9 1.0 CB A:MET19 4.7 11.3 1.0 F A:38E202 4.7 16.7 1.0 CA A:SER27 4.7 12.4 1.0 O A:GLN25 4.9 16.0 1.0 C6 A:38E202 4.9 9.7 1.0 N A:38E202 4.9 12.0 1.0 CA A:THR26 5.0 15.2 1.0

Fluorine binding site 2 out of 4 in the Structure of EF1P2_MFAP2B Bound to Dfhbi


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of EF1P2_MFAP2B Bound to Dfhbi within 5.0Å range: probe atom residue distance (Å) B Occ A:F202 b:16.7 occ:1.00 F A:38E202 0.0 16.7 1.0 C A:38E202 1.4 15.1 1.0 C5 A:38E202 2.4 10.6 1.0 C1 A:38E202 2.4 13.5 1.0 O1 A:38E202 2.7 13.5 1.0 NZ A:LYS105 3.2 16.7 1.0 CD1 A:ILE81 3.3 16.2 1.0 CE A:LYS105 3.3 16.3 1.0 C2 A:38E202 3.6 12.0 1.0 C4 A:38E202 3.7 12.7 1.0 CD1 A:LEU78 3.8 15.9 1.0 CZ A:TYR101 3.9 15.5 1.0 CE1 A:TYR101 4.0 12.6 1.0 CE2 A:TYR101 4.0 15.1 1.0 C3 A:38E202 4.1 11.7 1.0 CD1 A:TYR101 4.2 13.8 1.0 CD2 A:TYR101 4.2 16.6 1.0 CG A:TYR101 4.3 16.2 1.0 OH A:TYR101 4.4 22.6 1.0 CD A:LYS105 4.5 19.9 1.0 CD1 A:LEU121 4.6 11.9 1.0 CD1 A:ILE49 4.7 13.4 1.0 F1 A:38E202 4.7 15.7 1.0 CG1 A:ILE81 4.8 13.8 1.0 C6 A:38E202 4.8 9.7 1.0 CD2 A:LEU121 4.9 13.9 1.0 CG A:LEU121 4.9 19.1 1.0

Fluorine binding site 3 out of 4 in the Structure of EF1P2_MFAP2B Bound to Dfhbi


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of EF1P2_MFAP2B Bound to Dfhbi within 5.0Å range: probe atom residue distance (Å) B Occ B:F202 b:18.4 occ:1.00 F1 B:38E202 0.0 18.4 1.0 C2 B:38E202 1.3 17.1 1.0 C3 B:38E202 2.4 13.9 1.0 C1 B:38E202 2.4 20.2 1.0 O1 B:38E202 2.7 19.7 1.0 ND2 B:ASN21 3.6 21.7 1.0 C B:38E202 3.6 15.8 1.0 C4 B:38E202 3.6 14.4 1.0 CB B:SER27 3.7 15.6 1.0 OG B:SER27 3.8 15.5 1.0 CG2 B:ILE49 3.9 14.8 1.0 CD1 B:ILE49 4.0 12.9 1.0 CG1 B:ILE49 4.0 16.8 1.0 C5 B:38E202 4.1 14.3 1.0 CB B:ASN21 4.2 17.4 1.0 CD1 B:LEU121 4.3 16.5 1.0 CG B:ASN21 4.3 22.5 1.0 O B:THR26 4.3 16.6 1.0 C B:THR26 4.4 17.1 1.0 CB B:ILE49 4.5 16.8 1.0 N B:SER27 4.5 16.0 1.0 CA B:SER27 4.7 18.3 1.0 F B:38E202 4.7 18.7 1.0 N B:ASN21 4.8 15.4 1.0 CB B:MET19 4.8 16.2 1.0 C6 B:38E202 4.9 13.4 1.0 N B:38E202 4.9 15.2 1.0 O B:GLN25 5.0 23.2 1.0 CA B:THR26 5.0 21.9 1.0

Fluorine binding site 4 out of 4 in the Structure of EF1P2_MFAP2B Bound to Dfhbi


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of EF1P2_MFAP2B Bound to Dfhbi within 5.0Å range: probe atom residue distance (Å) B Occ B:F202 b:18.7 occ:1.00 F B:38E202 0.0 18.7 1.0 C B:38E202 1.3 15.8 1.0 C5 B:38E202 2.4 14.3 1.0 C1 B:38E202 2.4 20.2 1.0 O1 B:38E202 2.7 19.7 1.0 CE B:LYS105 3.2 21.4 1.0 NZ B:LYS105 3.2 20.6 1.0 CD1 B:ILE81 3.3 13.6 1.0 C4 B:38E202 3.6 14.4 1.0 C2 B:38E202 3.6 17.1 1.0 CD1 B:LEU78 3.8 14.2 1.0 CE2 B:TYR101 3.8 20.1 1.0 CZ B:TYR101 3.9 21.0 1.0 CD2 B:TYR101 4.0 15.9 1.0 CE1 B:TYR101 4.1 21.6 1.0 C3 B:38E202 4.1 13.9 1.0 CG B:TYR101 4.3 15.0 1.0 CD1 B:TYR101 4.3 18.2 1.0 CD B:LYS105 4.4 23.8 1.0 OH B:TYR101 4.4 28.7 1.0 CD2 B:LEU121 4.6 13.7 1.0 CD1 B:LEU121 4.6 16.5 1.0 F1 B:38E202 4.7 18.4 1.0 CG1 B:ILE81 4.8 17.8 1.0 C6 B:38E202 4.8 13.4 1.0 CG B:LYS105 4.9 20.7 1.0 CD1 B:ILE49 5.0 12.9 1.0

L.A.Doyle, L.A.Doyle, B.L.Stoddard. N/A N/A.