Fluorine in PDB 6or7: Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp

Enzymatic activity of Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp

All present enzymatic activity of Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp:
2.7.7.49; 2.7.7.7; 3.1.26.13;

Protein crystallography data

The structure of Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp, PDB code: 6or7 was solved by N.Bertoletti, A.H.Chan, K.S.Anderson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.57 / 2.53
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 166.499, 169.825, 103.283, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.9

Other elements in 6or7:

The structure of Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp (pdb code 6or7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp, PDB code: 6or7:

Fluorine binding site 1 out of 1 in 6or7

Go back to Fluorine Binding Sites List in 6or7
Fluorine binding site 1 out of 1 in the Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Dna and (-)Ftc-Tp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:56.4
occ:1.00
 FAJ A:1RY601 0.0 56.4 1.0
CAU A:1RY601 1.3 55.7 1.0
CAK A:1RY601 2.3 56.1 1.0
CAT A:1RY601 2.4 54.6 1.0
NAA A:1RY601 2.7 53.3 1.0
NH2 A:ARG72 3.2 65.5 1.0
CZ A:ARG72 3.4 65.2 1.0
NAY A:1RY601 3.6 57.7 1.0
NAN A:1RY601 3.6 53.8 1.0
N7 P:DDG822 3.6 45.1 1.0
C5 P:DDG822 3.7 44.7 1.0
NH1 A:ARG72 3.7 69.9 1.0
C8 P:DDG822 4.0 45.5 1.0
NE A:ARG72 4.0 57.6 1.0
C4 P:DDG822 4.1 44.4 1.0
CAV A:1RY601 4.1 55.3 1.0
C6 P:DDG822 4.1 46.1 1.0
N9 P:DDG822 4.3 44.2 1.0
O6 P:DDG822 4.4 48.2 1.0
C2' P:DDG822 4.7 46.5 1.0
N1 P:DDG822 4.7 46.1 1.0
N3 P:DDG822 4.8 45.1 1.0
CAX A:1RY601 4.8 62.8 1.0
CD A:ARG72 4.9 57.7 1.0
OAP A:1RY601 5.0 65.3 1.0

Reference:

N.Bertoletti, A.H.Chan, R.F.Schinazi, Y.W.Yin, K.S.Anderson. Structural Insights Into the Recognition of Nucleoside Reverse Transcriptase Inhibitors By Hiv-1 Reverse Transcriptase: First Crystal Structures with Reverse Transcriptase and the Active Triphosphate Forms of Lamivudine and Emtricitabine. Protein Sci. V. 28 1664 2019.
ISSN: ESSN 1469-896X
PubMed: 31301259
DOI: 10.1002/PRO.3681
Page generated: Sun Dec 13 13:04:34 2020

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