Fluorine in PDB 6owc: Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Protein crystallography data
The structure of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545., PDB code: 6owc
was solved by
N.A.Larsen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
73.16 /
1.85
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.460,
83.460,
151.980,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.8 /
22.6
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
(pdb code 6owc). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the
Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545., PDB code: 6owc:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Fluorine binding site 1 out
of 8 in 6owc
Go back to
Fluorine Binding Sites List in 6owc
Fluorine binding site 1 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F601
b:28.9
occ:1.00
|
F2
|
A:ND1601
|
0.0
|
28.9
|
1.0
|
C17
|
A:ND1601
|
1.3
|
25.6
|
1.0
|
F1
|
A:ND1601
|
2.1
|
31.4
|
1.0
|
F3
|
A:ND1601
|
2.2
|
29.2
|
1.0
|
C16
|
A:ND1601
|
2.3
|
23.3
|
1.0
|
C15
|
A:ND1601
|
2.9
|
23.8
|
1.0
|
C30
|
A:ND1601
|
3.4
|
21.9
|
1.0
|
C18
|
A:ND1601
|
3.5
|
26.5
|
1.0
|
C14
|
A:ND1601
|
3.6
|
22.1
|
1.0
|
CE
|
A:MET388
|
3.6
|
20.7
|
1.0
|
C19
|
A:ND1601
|
3.7
|
26.6
|
1.0
|
C24
|
A:ND1601
|
3.9
|
22.4
|
1.0
|
CD1
|
A:LEU428
|
4.0
|
21.7
|
1.0
|
CG2
|
A:ILE424
|
4.1
|
43.0
|
1.0
|
C23
|
A:ND1601
|
4.5
|
29.4
|
1.0
|
C29
|
A:ND1601
|
4.5
|
21.8
|
1.0
|
CD1
|
A:LEU384
|
4.6
|
23.7
|
1.0
|
CG
|
A:MET388
|
4.6
|
18.6
|
1.0
|
F4
|
A:ND1601
|
4.7
|
24.2
|
1.0
|
C20
|
A:ND1601
|
4.8
|
31.6
|
1.0
|
C12
|
A:ND1601
|
4.8
|
22.7
|
1.0
|
CE1
|
A:PHE404
|
4.9
|
22.3
|
1.0
|
SD
|
A:MET388
|
5.0
|
21.5
|
1.0
|
|
Fluorine binding site 2 out
of 8 in 6owc
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Fluorine Binding Sites List in 6owc
Fluorine binding site 2 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F601
b:29.2
occ:1.00
|
F3
|
A:ND1601
|
0.0
|
29.2
|
1.0
|
C17
|
A:ND1601
|
1.4
|
25.6
|
1.0
|
F2
|
A:ND1601
|
2.2
|
28.9
|
1.0
|
F1
|
A:ND1601
|
2.2
|
31.4
|
1.0
|
C16
|
A:ND1601
|
2.3
|
23.3
|
1.0
|
CD1
|
A:LEU428
|
3.4
|
21.7
|
1.0
|
CZ
|
A:PHE404
|
3.5
|
24.7
|
1.0
|
C15
|
A:ND1601
|
3.6
|
23.8
|
1.0
|
CE1
|
A:PHE404
|
3.8
|
22.3
|
1.0
|
CG
|
A:MET421
|
4.2
|
51.1
|
1.0
|
CG2
|
A:ILE424
|
4.3
|
43.0
|
1.0
|
C18
|
A:ND1601
|
4.3
|
26.5
|
1.0
|
C30
|
A:ND1601
|
4.4
|
21.9
|
1.0
|
CD2
|
A:LEU391
|
4.5
|
22.4
|
1.0
|
C14
|
A:ND1601
|
4.6
|
22.1
|
1.0
|
C24
|
A:ND1601
|
4.8
|
22.4
|
1.0
|
CE2
|
A:PHE404
|
4.8
|
24.1
|
1.0
|
C23
|
A:ND1601
|
4.8
|
29.4
|
1.0
|
SD
|
A:MET421
|
4.8
|
50.8
|
1.0
|
CG
|
A:LEU428
|
4.9
|
20.1
|
1.0
|
CD1
|
A:LEU402
|
4.9
|
24.8
|
1.0
|
|
Fluorine binding site 3 out
of 8 in 6owc
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Fluorine Binding Sites List in 6owc
Fluorine binding site 3 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F601
b:31.4
occ:1.00
|
F1
|
A:ND1601
|
0.0
|
31.4
|
1.0
|
C17
|
A:ND1601
|
1.3
|
25.6
|
1.0
|
F2
|
A:ND1601
|
2.1
|
28.9
|
1.0
|
F3
|
A:ND1601
|
2.2
|
29.2
|
1.0
|
C16
|
A:ND1601
|
2.3
|
23.3
|
1.0
|
C18
|
A:ND1601
|
2.9
|
26.5
|
1.0
|
C15
|
A:ND1601
|
3.0
|
23.8
|
1.0
|
C23
|
A:ND1601
|
3.2
|
29.4
|
1.0
|
C19
|
A:ND1601
|
3.4
|
26.6
|
1.0
|
CG2
|
A:ILE424
|
3.5
|
43.0
|
1.0
|
CG
|
A:MET421
|
3.7
|
51.1
|
1.0
|
C22
|
A:ND1601
|
4.0
|
33.3
|
1.0
|
C20
|
A:ND1601
|
4.1
|
31.6
|
1.0
|
CB
|
A:ILE424
|
4.1
|
38.0
|
1.0
|
CD1
|
A:ILE424
|
4.3
|
51.2
|
1.0
|
C21
|
A:ND1601
|
4.3
|
31.4
|
1.0
|
C14
|
A:ND1601
|
4.3
|
22.1
|
1.0
|
CA
|
A:MET421
|
4.5
|
52.7
|
1.0
|
CB
|
A:MET421
|
4.5
|
52.2
|
1.0
|
SD
|
A:MET421
|
4.5
|
50.8
|
1.0
|
CD1
|
A:LEU428
|
4.6
|
21.7
|
1.0
|
CG1
|
A:ILE424
|
4.8
|
48.0
|
1.0
|
O
|
A:MET421
|
4.9
|
38.8
|
1.0
|
CE
|
A:MET388
|
4.9
|
20.7
|
1.0
|
|
Fluorine binding site 4 out
of 8 in 6owc
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Fluorine Binding Sites List in 6owc
Fluorine binding site 4 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F601
b:24.2
occ:1.00
|
F4
|
A:ND1601
|
0.0
|
24.2
|
1.0
|
C28
|
A:ND1601
|
1.4
|
24.1
|
1.0
|
N5
|
A:ND1601
|
2.4
|
22.8
|
1.0
|
C29
|
A:ND1601
|
2.4
|
21.8
|
1.0
|
C30
|
A:ND1601
|
3.1
|
21.9
|
1.0
|
O
|
A:LEU387
|
3.1
|
16.5
|
1.0
|
C
|
A:LEU387
|
3.2
|
19.1
|
1.0
|
CD2
|
A:LEU391
|
3.3
|
22.4
|
1.0
|
CB
|
A:LEU391
|
3.4
|
19.8
|
1.0
|
N
|
A:MET388
|
3.4
|
17.5
|
1.0
|
CA
|
A:MET388
|
3.4
|
17.4
|
1.0
|
N4
|
A:ND1601
|
3.4
|
23.9
|
1.0
|
C27
|
A:ND1601
|
3.5
|
22.7
|
1.0
|
CB
|
A:LEU387
|
3.7
|
20.1
|
1.0
|
CG
|
A:MET388
|
3.9
|
18.6
|
1.0
|
CG
|
A:LEU391
|
3.9
|
20.6
|
1.0
|
CA
|
A:LEU387
|
4.1
|
18.5
|
1.0
|
CB
|
A:MET388
|
4.3
|
17.5
|
1.0
|
C
|
A:MET388
|
4.4
|
17.6
|
1.0
|
C24
|
A:ND1601
|
4.5
|
22.4
|
1.0
|
CD1
|
A:LEU391
|
4.6
|
21.4
|
1.0
|
CE1
|
A:PHE404
|
4.6
|
22.3
|
1.0
|
CA
|
A:LEU391
|
4.6
|
20.2
|
1.0
|
O
|
A:HOH760
|
4.7
|
28.9
|
1.0
|
O
|
A:MET388
|
4.7
|
16.9
|
1.0
|
F2
|
A:ND1601
|
4.7
|
28.9
|
1.0
|
C26
|
A:ND1601
|
4.7
|
21.5
|
1.0
|
N
|
A:LEU391
|
4.7
|
18.2
|
1.0
|
CG
|
A:LEU387
|
4.9
|
21.6
|
1.0
|
|
Fluorine binding site 5 out
of 8 in 6owc
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Fluorine Binding Sites List in 6owc
Fluorine binding site 5 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:27.8
occ:1.00
|
F2
|
B:ND1601
|
0.0
|
27.8
|
1.0
|
C17
|
B:ND1601
|
1.3
|
30.9
|
1.0
|
F1
|
B:ND1601
|
2.0
|
33.0
|
1.0
|
F3
|
B:ND1601
|
2.1
|
32.3
|
1.0
|
C16
|
B:ND1601
|
2.3
|
26.4
|
1.0
|
C15
|
B:ND1601
|
2.9
|
29.6
|
1.0
|
C30
|
B:ND1601
|
3.4
|
25.9
|
1.0
|
C18
|
B:ND1601
|
3.5
|
30.2
|
1.0
|
CE
|
B:MET388
|
3.5
|
23.6
|
1.0
|
C14
|
B:ND1601
|
3.6
|
27.4
|
1.0
|
C19
|
B:ND1601
|
3.6
|
31.9
|
1.0
|
C24
|
B:ND1601
|
3.9
|
29.7
|
1.0
|
CD1
|
B:LEU428
|
3.9
|
28.2
|
1.0
|
CG2
|
B:ILE424
|
4.0
|
37.7
|
1.0
|
C29
|
B:ND1601
|
4.5
|
25.5
|
1.0
|
C23
|
B:ND1601
|
4.5
|
39.7
|
1.0
|
C20
|
B:ND1601
|
4.7
|
32.4
|
1.0
|
F4
|
B:ND1601
|
4.8
|
27.9
|
1.0
|
CG
|
B:MET388
|
4.8
|
21.8
|
1.0
|
C12
|
B:ND1601
|
4.8
|
27.8
|
1.0
|
CD1
|
B:LEU384
|
4.8
|
26.3
|
1.0
|
SD
|
B:MET388
|
4.9
|
23.8
|
1.0
|
CE2
|
B:PHE404
|
5.0
|
36.4
|
1.0
|
C28
|
B:ND1601
|
5.0
|
27.0
|
1.0
|
|
Fluorine binding site 6 out
of 8 in 6owc
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Fluorine Binding Sites List in 6owc
Fluorine binding site 6 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:32.3
occ:1.00
|
F3
|
B:ND1601
|
0.0
|
32.3
|
1.0
|
C17
|
B:ND1601
|
1.2
|
30.9
|
1.0
|
F1
|
B:ND1601
|
2.0
|
33.0
|
1.0
|
F2
|
B:ND1601
|
2.1
|
27.8
|
1.0
|
C16
|
B:ND1601
|
2.2
|
26.4
|
1.0
|
CD1
|
B:LEU428
|
3.3
|
28.2
|
1.0
|
C15
|
B:ND1601
|
3.6
|
29.6
|
1.0
|
CE1
|
B:PHE425
|
3.6
|
50.8
|
1.0
|
CZ
|
B:PHE404
|
3.7
|
33.1
|
1.0
|
CD1
|
B:PHE425
|
3.8
|
42.6
|
1.0
|
CE2
|
B:PHE404
|
4.0
|
36.4
|
1.0
|
CG2
|
B:ILE424
|
4.1
|
37.7
|
1.0
|
C18
|
B:ND1601
|
4.3
|
30.2
|
1.0
|
C30
|
B:ND1601
|
4.4
|
25.9
|
1.0
|
C14
|
B:ND1601
|
4.6
|
27.4
|
1.0
|
CG
|
B:MET421
|
4.6
|
44.2
|
1.0
|
CZ
|
B:PHE425
|
4.7
|
51.7
|
1.0
|
CD2
|
B:LEU391
|
4.7
|
26.6
|
1.0
|
C24
|
B:ND1601
|
4.7
|
29.7
|
1.0
|
CG
|
B:LEU428
|
4.8
|
29.9
|
1.0
|
C23
|
B:ND1601
|
4.8
|
39.7
|
1.0
|
CB
|
B:ILE424
|
4.8
|
40.3
|
1.0
|
CE1
|
B:PHE404
|
4.9
|
34.0
|
1.0
|
C19
|
B:ND1601
|
4.9
|
31.9
|
1.0
|
|
Fluorine binding site 7 out
of 8 in 6owc
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Fluorine Binding Sites List in 6owc
Fluorine binding site 7 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:33.0
occ:1.00
|
F1
|
B:ND1601
|
0.0
|
33.0
|
1.0
|
C17
|
B:ND1601
|
1.2
|
30.9
|
1.0
|
F2
|
B:ND1601
|
2.0
|
27.8
|
1.0
|
F3
|
B:ND1601
|
2.0
|
32.3
|
1.0
|
C16
|
B:ND1601
|
2.3
|
26.4
|
1.0
|
C18
|
B:ND1601
|
2.9
|
30.2
|
1.0
|
C15
|
B:ND1601
|
2.9
|
29.6
|
1.0
|
C23
|
B:ND1601
|
3.3
|
39.7
|
1.0
|
C19
|
B:ND1601
|
3.3
|
31.9
|
1.0
|
CG2
|
B:ILE424
|
3.5
|
37.7
|
1.0
|
CG
|
B:MET421
|
3.9
|
44.2
|
1.0
|
CB
|
B:ILE424
|
4.0
|
40.3
|
1.0
|
C22
|
B:ND1601
|
4.0
|
40.2
|
1.0
|
CD1
|
B:ILE424
|
4.1
|
46.9
|
1.0
|
C20
|
B:ND1601
|
4.1
|
32.4
|
1.0
|
C14
|
B:ND1601
|
4.2
|
27.4
|
1.0
|
C21
|
B:ND1601
|
4.4
|
39.3
|
1.0
|
SD
|
B:MET421
|
4.5
|
45.4
|
1.0
|
CD1
|
B:LEU428
|
4.6
|
28.2
|
1.0
|
CE1
|
B:PHE425
|
4.6
|
50.8
|
1.0
|
CG1
|
B:ILE424
|
4.6
|
43.1
|
1.0
|
CD1
|
B:PHE425
|
4.7
|
42.6
|
1.0
|
CE
|
B:MET388
|
4.8
|
23.6
|
1.0
|
C30
|
B:ND1601
|
4.9
|
25.9
|
1.0
|
O
|
B:MET421
|
4.9
|
46.5
|
1.0
|
C24
|
B:ND1601
|
5.0
|
29.7
|
1.0
|
|
Fluorine binding site 8 out
of 8 in 6owc
Go back to
Fluorine Binding Sites List in 6owc
Fluorine binding site 8 out
of 8 in the Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545.
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Mutant Estrogen Receptor Alpha (Era) Y537S Covalently Bound to H3B- 6545. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F601
b:27.9
occ:1.00
|
F4
|
B:ND1601
|
0.0
|
27.9
|
1.0
|
C28
|
B:ND1601
|
1.4
|
27.0
|
1.0
|
N5
|
B:ND1601
|
2.3
|
27.2
|
1.0
|
C29
|
B:ND1601
|
2.5
|
25.5
|
1.0
|
O
|
B:LEU387
|
3.1
|
23.9
|
1.0
|
C
|
B:LEU387
|
3.2
|
22.4
|
1.0
|
C30
|
B:ND1601
|
3.3
|
25.9
|
1.0
|
CB
|
B:LEU391
|
3.3
|
25.3
|
1.0
|
CA
|
B:MET388
|
3.3
|
20.8
|
1.0
|
CD2
|
B:LEU391
|
3.3
|
26.6
|
1.0
|
N
|
B:MET388
|
3.3
|
23.0
|
1.0
|
N4
|
B:ND1601
|
3.4
|
26.1
|
1.0
|
C27
|
B:ND1601
|
3.5
|
28.1
|
1.0
|
CB
|
B:LEU387
|
3.8
|
22.9
|
1.0
|
CG
|
B:MET388
|
3.9
|
21.8
|
1.0
|
CG
|
B:LEU391
|
3.9
|
28.5
|
1.0
|
CA
|
B:LEU387
|
4.1
|
22.8
|
1.0
|
CB
|
B:MET388
|
4.2
|
22.1
|
1.0
|
C
|
B:MET388
|
4.3
|
20.8
|
1.0
|
CA
|
B:LEU391
|
4.5
|
27.3
|
1.0
|
O
|
B:MET388
|
4.5
|
20.6
|
1.0
|
N
|
B:LEU391
|
4.6
|
24.0
|
1.0
|
CE2
|
B:PHE404
|
4.6
|
36.4
|
1.0
|
C24
|
B:ND1601
|
4.6
|
29.7
|
1.0
|
O
|
B:HOH744
|
4.7
|
27.4
|
1.0
|
CD1
|
B:LEU391
|
4.7
|
27.2
|
1.0
|
C26
|
B:ND1601
|
4.7
|
26.2
|
1.0
|
F2
|
B:ND1601
|
4.8
|
27.8
|
1.0
|
CD2
|
B:PHE404
|
5.0
|
36.2
|
1.0
|
|
Reference:
C.Furman,
N.A.Larsen.
N/A N/A.
Page generated: Thu Aug 1 23:56:30 2024
|